TCONS_00020001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020001
Unique NameTCONS_00020001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020001 ID=TCONS_00020001|Name=TCONS_00020001|organism=Clytia hemisphaerica|type=transcript|length=2397bp
GCTAAGCGaaatgaaaagataaaaatatatactttgtTTGCTTGGATAAC
TAAATGATTGCATAGCAATGAATTAAAcatgaaaagtaaaaataaagttt
CAGGCTAAAACATCGAAAACGATTAACGTGATAATTTAAGAAATGTAGAC
TAgttctttcttttgaaattttctccaGCTTCCCCacaacacaaaaataa
aaaattatacaatatcatattatattatattatctaGAAATAAATACCCA
AGTAACTCGACATATAATTTACAAATTAGAGTTAATACTTTTCTTTAGTT
AGTTAGTTTTCATGcattaaataaatttaaaatgaatgaaagatGGTCCG
AGATGGTCCGAGCTGGTCCGAGAAATATTTATTTAATCTTTGAATGTTTA
GAAAAATGTATAGCGGATTCTGACCAATATAATCTTTATTTCCGAAGCTT
TGAACTTATTTCAGTCTGGTGTTGTCCCTGATACAGAAATTTAcgattca
ccaaaatttcagtaatgaaaaataaaaaagtacgaaaagaaaatatagaa
aaatattcaaaaattaccAGAAAAGttatgttaaaaaaataattataccC
ATACgaaaataaatacaaataaGCTTACTCGAAATGAAAGCATTCTTTGA
CATCACTTGAAAATTACAGGTGAATGAGTTGGCTGAAGAGATATTCACAT
ATTTTTGGGACATAATTGTGGAAAACTGCTTCCCAAATAATATTCGATTT
CTAAGTTTTACTAATTCATTGTCAAATTGGAATAACCttcaacaaatatt
ttcttcattgAAGGAGGGAAAATTAAACTGACTTAAATTAGAAATACTCT
GAAGATTGTATTGAATTGCTGAAATTTACAAAACAGTGGCATTGATTGGA
CAAAGCATAATATATATTGAAATGCTGATATTTTTCACAAGTGAGGCCAT
GAGAACAAGTGaagttttagtgaaattttcTCGAGTGTTTGAGACTATGT
GCATTTAAgaataacaaaaataataatcaaTTTTCTTTGGAGCTAGAAAA
GTCTCTTtagattgaaaaaaactttcagtaAGCTAACCCCACGTTTACAT
AATCTTAAATGATTTCTANCAGCAGCCATCAAGACTAAGGCCAACATTTT
CTGATGTTTGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTT
TGTCCTCAAACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCT
TCGAATTGGTCTGATTGGTGGTAGGCAGGTTTCTNTCTCTGTCGTCAGTC
ATTGCTTCTTCATCATTGTTATAACAGTTTTTATCCCAATTAAAAATACG
ATTTATTGCAATGATTGATGTACATGAAAGCACAATTATTGTTCCAATTA
AAGCTGATAAACCAGGCGGATGATGAACAAAAATGTATTGGAAAAGAAAT
GCATAAATTACATCCATATTGCGAACCAAAACAGCAGGCCCAGGATTTTC
TAGTTGTAAGGCCTCAGCCATAAACATCAGACCTATGAAGGCAACAAAAC
CAACAACAAATAGTAATCCCCAAGATAAGCTATTCAGTTCTGTTGTCACA
ACATGTTCCCCTTTAATTCCCATTGCAATGGGTGCAATTATCATGCCAAA
AATACTTGGATAAAAGATTGTTAACGTAACATCAGTCTTCTTTCCATTCA
TCTTGTTTAAAATGTAAAACCACGACAAACAAATTGCAGCTAGTAAAGCA
AAGCTGGCACCAACAATATAATCAGTAGAGAGAGTGTTGATCATACTTTG
AGAGTGTGGGACTTTGTGCTGATGATGAAAGTAGATTGATGTTTTATTTC
CTTCAATAATCGACGGTTTGGCAATGAGAATAACTCCAACAAAACTAACG
GTGCCAAATATACCGTCCACCCAACCACAGCATTTTTTAGTGATACAGAA
ACTAAAAATCATGGTAAAGACTGGAGCAGTGAATTGAATAACTGTTGCAT
CACCAACAGGAATCTTTTCCAGGGCaagataaaccaaaacaatTGCAGCA
GCCTCAATGATACCCATTATACACAAAGaccaaatgtttttcttttcaga
tcCGTATGGATGAACTTTGCCGTGTACCATGAATATCACTGTGAAGACAA
ATTGTATTAACGAGCGTACAAACAAGACTTCAAAGGACGATATGTGCAGG
CCCGGATTTTTCATGTAAACAAACTGAACCAAACTGTTTCCTAGTGTTAA
AAATAAACCAGCAGCAGCCATCAAGACTAAGGCCAACATTTTCTGATGTT
TGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTTTGTCCTCA
AACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCTTCGAA
Run BLAST on NCBI

protein sequence of TCONS_00020001-protein

>TCONS_00020001-protein ID=TCONS_00020001-protein|Name=TCONS_00020001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
FEEDDSHLFDLPAVGFEDKMVGIIGNMIGTDNKHQKMLALVLMAAAGLFL
TLGNSLVQFVYMKNPGLHISSFEVLFVRSLIQFVFTVIFMVHGKVHPYGS
EKKNIWSLCIMGIIEAAAIVLVYLALEKIPVGDATVIQFTAPVFTMIFSF
CITKKCCGWVDGIFGTVSFVGVILIAKPSIIEGNKTSIYFHHQHKVPHSQ
SMINTLSTDYIVGASFALLAAICLSWFYILNKMNGKKTDVTLTIFYPSIF
GMIIAPIAMGIKGEHVVTTELNSLSWGLLFVVGFVAFIGLMFMAEALQLE
NPGPAVLVRNMDVIYAFLFQYIFVHHPPGLSALIGTIIVLSCTSIIAINR
IFNWDKNCYNNDEEAMTDDRXRNLPTTNQTNSKKTILIFLIFLLLGLRTK
WLEL
Run BLAST on NCBI

transcript from alignment at sc0000345:193983..196379-

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020001 ID=TCONS_00020001|Name=TCONS_00020001|organism=Clytia hemisphaerica|type=transcript|length=2397bp|location=Sequence derived from alignment at sc0000345:193983..196379- (Clytia hemisphaerica)
GCTAAGCGAAATGAAAAGATAAAAATATATACTTTGTTTGCTTGGATAAC
TAAATGATTGCATAGCAATGAATTAAACATGAAAAGTAAAAATAAAGTTT
CAGGCTAAAACATCGAAAACGATTAACGTGATAATTTAAGAAATGTAGAC
TAGTTCTTTCTTTTGAAATTTTCTCCAGCTTCCCCACAACACAAAAATAA
AAAATTATACAATATCATATTATATTATATTATCTAGAAATAAATACCCA
AGTAACTCGACATATAATTTACAAATTAGAGTTAATACTTTTCTTTAGTT
AGTTAGTTTTCATGCATTAAATAAATTTAAAATGAATGAAAGATGGTCCG
AGATGGTCCGAGCTGGTCCGAGAAATATTTATTTAATCTTTGAATGTTTA
GAAAAATGTATAGCGGATTCTGACCAATATAATCTTTATTTCCGAAGCTT
TGAACTTATTTCAGTCTGGTGTTGTCCCTGATACAGAAATTTACGATTCA
CCAAAATTTCAGTAATGAAAAATAAAAAAGTACGAAAAGAAAATATAGAA
AAATATTCAAAAATTACCAGAAAAGTTATGTTAAAAAAATAATTATACCC
ATACGAAAATAAATACAAATAAGCTTACTCGAAATGAAAGCATTCTTTGA
CATCACTTGAAAATTACAGGTGAATGAGTTGGCTGAAGAGATATTCACAT
ATTTTTGGGACATAATTGTGGAAAACTGCTTCCCAAATAATATTCGATTT
CTAAGTTTTACTAATTCATTGTCAAATTGGAATAACCTTCAACAAATATT
TTCTTCATTGAAGGAGGGAAAATTAAACTGACTTAAATTAGAAATACTCT
GAAGATTGTATTGAATTGCTGAAATTTACAAAACAGTGGCATTGATTGGA
CAAAGCATAATATATATTGAAATGCTGATATTTTTCACAAGTGAGGCCAT
GAGAACAAGTGAAGTTTTAGTGAAATTTTCTCGAGTGTTTGAGACTATGT
GCATTTAAGAATAACAAAAATAATAATCAATTTTCTTTGGAGCTAGAAAA
GTCTCTTTAGATTGAAAAAAACTTTCAGTAAGCTAACCCCACGTTTACAT
AATCTTAAATGATTTCTANCAGCAGCCATCAAGACTAAGGCCAACATTTT
CTGATGTTTGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTT
TGTCCTCAAACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCT
TCGAATTGGTCTGATTGGTGGTAGGCAGGTTTCTNTCTCTGTCGTCAGTC
ATTGCTTCTTCATCATTGTTATAACAGTTTTTATCCCAATTAAAAATACG
ATTTATTGCAATGATTGATGTACATGAAAGCACAATTATTGTTCCAATTA
AAGCTGATAAACCAGGCGGATGATGAACAAAAATGTATTGGAAAAGAAAT
GCATAAATTACATCCATATTGCGAACCAAAACAGCAGGCCCAGGATTTTC
TAGTTGTAAGGCCTCAGCCATAAACATCAGACCTATGAAGGCAACAAAAC
CAACAACAAATAGTAATCCCCAAGATAAGCTATTCAGTTCTGTTGTCACA
ACATGTTCCCCTTTAATTCCCATTGCAATGGGTGCAATTATCATGCCAAA
AATACTTGGATAAAAGATTGTTAACGTAACATCAGTCTTCTTTCCATTCA
TCTTGTTTAAAATGTAAAACCACGACAAACAAATTGCAGCTAGTAAAGCA
AAGCTGGCACCAACAATATAATCAGTAGAGAGAGTGTTGATCATACTTTG
AGAGTGTGGGACTTTGTGCTGATGATGAAAGTAGATTGATGTTTTATTTC
CTTCAATAATCGACGGTTTGGCAATGAGAATAACTCCAACAAAACTAACG
GTGCCAAATATACCGTCCACCCAACCACAGCATTTTTTAGTGATACAGAA
ACTAAAAATCATGGTAAAGACTGGAGCAGTGAATTGAATAACTGTTGCAT
CACCAACAGGAATCTTTTCCAGGGCAAGATAAACCAAAACAATTGCAGCA
GCCTCAATGATACCCATTATACACAAAGACCAAATGTTTTTCTTTTCAGA
TCCGTATGGATGAACTTTGCCGTGTACCATGAATATCACTGTGAAGACAA
ATTGTATTAACGAGCGTACAAACAAGACTTCAAAGGACGATATGTGCAGG
CCCGGATTTTTCATGTAAACAAACTGAACCAAACTGTTTCCTAGTGTTAA
AAATAAACCAGCAGCAGCCATCAAGACTAAGGCCAACATTTTCTGATGTT
TGTTATCAGTCCCAATCATATTTCCTATAATTCCAACCATTTTGTCCTCA
AACCCAACAGCAGGAAGATCAAAAAGATGAGAATCGTCTTCTTCGAA

Coding sequence (CDS) from alignment at sc0000345:193983..196379-

>TCONS_00020001 ID=TCONS_00020001|Name=TCONS_00020001|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at sc0000345:193983..196379- (Clytia hemisphaerica)
CTATAATTCCAACCATTTTGTCCTCAAACCCAACAGCAGGAAGATCAAAA
AGATGAGAATCGTCTTCTTCGAATTGGTCTGATTGGTGGTAGGCAGGTTT
CTNTCTCTGTCGTCAGTCATTGCTTCTTCATCATTGTTATAACAGTTTTT
ATCCCAATTAAAAATACGATTTATTGCAATGATTGATGTACATGAAAGCA
CAATTATTGTTCCAATTAAAGCTGATAAACCAGGCGGATGATGAACAAAA
ATGTATTGGAAAAGAAATGCATAAATTACATCCATATTGCGAACCAAAAC
AGCAGGCCCAGGATTTTCTAGTTGTAAGGCCTCAGCCATAAACATCAGAC
CTATGAAGGCAACAAAACCAACAACAAATAGTAATCCCCAAGATAAGCTA
TTCAGTTCTGTTGTCACAACATGTTCCCCTTTAATTCCCATTGCAATGGG
TGCAATTATCATGCCAAAAATACTTGGATAAAAGATTGTTAACGTAACAT
CAGTCTTCTTTCCATTCATCTTGTTTAAAATGTAAAACCACGACAAACAA
ATTGCAGCTAGTAAAGCAAAGCTGGCACCAACAATATAATCAGTAGAGAG
AGTGTTGATCATACTTTGAGAGTGTGGGACTTTGTGCTGATGATGAAAGT
AGATTGATGTTTTATTTCCTTCAATAATCGACGGTTTGGCAATGAGAATA
ACTCCAACAAAACTAACGGTGCCAAATATACCGTCCACCCAACCACAGCA
TTTTTTAGTGATACAGAAACTAAAAATCATGGTAAAGACTGGAGCAGTGA
ATTGAATAACTGTTGCATCACCAACAGGAATCTTTTCCAGGGCAAGATAA
ACCAAAACAATTGCAGCAGCCTCAATGATACCCATTATACACAAAGACCA
AATGTTTTTCTTTTCAGATCCGTATGGATGAACTTTGCCGTGTACCATGA
ATATCACTGTGAAGACAAATTGTATTAACGAGCGTACAAACAAGACTTCA
AAGGACGATATGTGCAGGCCCGGATTTTTCATGTAAACAAACTGAACCAA
ACTGTTTCCTAGTGTTAAAAATAAACCAGCAGCAGCCATCAAGACTAAGG
CCAACATTTTCTGATGTTTGTTATCAGTCCCAATCATATTTCCTATAATT
CCAACCATTTTGTCCTCAAACCCAACAGCAGGAAGATCAAAAAGATGAGA
ATCGTCTTCTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011233XLOC_011233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020001-exon-sc0000345-1575043694:193983..196379TCONS_00020001-exon-sc0000345-1575043694:193983..196379Clytia hemisphaericaexon
TCONS_00020001-exon-sc0000345-1510915933:193983..196379TCONS_00020001-exon-sc0000345-1510915933:193983..196379Clytia hemisphaericaexon
TCONS_00020001-exon-sc0000345-1491911889:193983..196379TCONS_00020001-exon-sc0000345-1491911889:193983..196379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020001-proteinTCONS_00020001-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:193983..196379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.64822	8.42624	4.27237	4.42014	54.44	38.9655	33.0475	34.669	25.1677	24.7466	14.5012	14.8937	7.57518	6.54644	5.34674	5.11131	4.47171	5.41916	6.8897	10.7953	10.225	10.3192	8.25127	10.6275	7.29512	8.23162	10.7821	8.78993	7.39375	6.10401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000620EamA_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00020001 vs. Swiss-Prot (Human)
Match: S35G1 (Solute carrier family 35 member G1 OS=Homo sapiens GN=SLC35G1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.595e-21
Identity = 86/291 (29.55%), Postives = 155/291 (53.26%), Query Frame = -1 
Query: 1330 HISSFEVLFVRSLIQFVFTVIFMVHGKVHPYGSEKKNIWSLCIMGIIEAAAIVLVYLALEKIPVGDATVIQFTAPVFTMIFSF-CITKKCCGWVDGIFGTVSFVGVILIAKPSIIEGNKTSIYFHHQHKVPHSQSMINTLSTDYIVGASFALLAAICLSWFYILNKMNGKKTDVTLTIFYPSIFGMIIAPIAMGIKGEHVVT-TELNSLSWGLLFVVGFVAFIGLMFMAEALQLENPGPAVLVRNMDVIYAFLFQYIFVHHPPGLSALIGTIIVLSCTSIIAINRIFNWDK 2196
             + + E+   R + Q +  +  +++ K    G + + I+ L + G++ + A++L+Y A + + + DATVI F++PVFT IF++ C+ +K   W D +F   +  GVILI +P  + G+ TS       +  +S  +  T +    +G+  A+ AA   S   IL KM GK  D  L+I+Y  + G++ + I + + GE  +    L+ L    L  +G     G +F+ +ALQ+E  GP  +++ MDV++AF+FQ IF ++ P    + G + V++     AI + +   K
Sbjct:   94 DVHAVEISAFRCVFQMLVVIPCLIYRKTGFIGPKGQRIF-LILRGVLGSTAMMLIYYAYQTMSLADATVITFSSPVFTSIFAWICLKEKYSPW-DALFTVFTITGVILIVRPPFLFGSDTS-----GMEESYSGHLKGTFAA---IGS--AVFAA---STLVILRKM-GKSVDYFLSIWYYVVLGLVESVIILSVLGEWSLPYCGLDRL---FLIFIGLFGLGGQIFITKALQIEKAGPVAIMKTMDVVFAFIFQIIFFNNVPTWWTVGGALCVVASNVGAAIRKWYQSSK 365
The following BLAST results are available for this feature:
BLAST of TCONS_00020001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35G13.595e-2129.55Solute carrier family 35 member G1 OS=Homo sapiens... [more]
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