TCONS_00019990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019990
Unique NameTCONS_00019990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019990 ID=TCONS_00019990|Name=TCONS_00019990|organism=Clytia hemisphaerica|type=transcript|length=2330bp
tgttggtaAAAACAGGGTCATTTAGTTTGATACCGTAAGAGGAAATAAAG
ACCCTGgttttttgtgttgttgttttttctggcAAGTCTGATTGAAAATC
TGTTAACCTTGATAAAGTAAAGAAGcaagtttttttattcaatgagCTGA
AGTAAAGTTTCCGGGTTTGTTTCTCGAGTAAAACAAATTTATCCACGAGA
AAGCTTCTGATGAGGAAGTGATTGGTTTCAGGAAATTTGATTGTGCGGTA
TATTATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
CAATTCAACAAAAAGGTAATTTACTCAAATCACCATTAGAAGGGTCAGTA
GTCAACGAACATTTGGTAGGTTTCCATAACAACAACGGTAACCAACAACA
ACAGAGCTATGAAGTGAATGAACAACAACAACTCAATCACTATCTGATTT
ACCATTCAAATCTCTTACAAAGATTCCAAAACTCTTCAAGaattatCCAA
CAAAGACAACTTTTAGAACAGCAACAATGTCAAAATTCACCGATCCAATA
CATCAACCGGCAGAGTCCTTCAATTTCCATTGATTTACCAATCCAAATAC
TAACCAGTTGTATTGAATGGGCCAAAAGTGTGCCATTACTTAATGCTCTA
CCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGTGAACTTTT
CATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAATGCTAAGA
CATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCACCATCACAC
GAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTCAAATCTAT
GAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGCACTTTTTA
ATCCAGACACCCCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAA
GAAAAAGCCCAAACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCA
TCCATTCTCGTGTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTAT
CACTTATACAAGCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTT
GGAAATTTTTCAGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAA
TGATACCAAGTTTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCA
ACGCTCTAGCTTCCAATCTTTCACATTAGTCTGGGTAGACAGGTTTAGaa
ggtttttttaattttagaccAACTTCGGGGAGGTATGTCTGCCTTGGTTC
CTGCTTAGCATGTAAAAACATGTTCATCGCCACGAATTATCTATCGATAC
TTGAAGGTTTTAATTTTACATATGTGTTGCgttttcatatcagacacata
tttcatatcaggacagtgtctgactattgttatattgtgctgatataagc
aaagcaatatttttcttttcctctttctaaccaatcttgctccacatccg
tatcaATTCAATGTGAAGTTTGTAAATTACaagtgatgagtaagcaaacg
ataccactcttatgtaaaaacaaaacctttaacttagCTAATGCAAGATA
TACAAATGGTAAACTTACCTCAAATAACGGACGGATACCATCAAATTTAT
TCTACAATTCTTCTTCGCAATGTTAGCGTTTTAACTTTGCTGAGTAATTT
GTCGAAATTGGCCTGAatcgaagaaaaagaaaacattgatataATAAGCC
ATATAATTTTAAGGATAATTACTGCAGCTTATGACTGAAAAACAAAAGAG
AATTGTGGGAAAAATAAGTcgaaagaaatttttgtcatggaagaatttgt
tgatttttttgcaaaagattCTGTCTTCGATTGAACAGAGAAGAAGCTTG
CTCAACCTCAtaaaatttcagttcatttcacCGGTAAAATTTCTTCGGaa
gcaaaaaagcaaaaaagtgGGCGTGGCGGATacttaaaatttggacaaaa
gaaTCTGAACACAGTTTGTGAAAAGTTCTCTTAGGGGCTTTCAATAACGC
AAATTTTTCCTCGCCAAGTATTGATTAGTTTATTTTTCTCGGACAATACC
CCTGACATACGTACGACCCTTGCAAACGTAGTCGGGTGGGCGGGCGCTCA
GCCGGATAGGATAGGTATAAAGTTAAACATACCCTATTCGTCACATAGAA
TCTTATTTAGAAAACTCTATAAATATTATACATTATACGGaagatagaaa
atatttttgattatatttttgtaataaaGAAATCTATATTATTTTTGcga
ataaatttatttttttaaattgaaaaaatt
Run BLAST on NCBI

protein sequence of TCONS_00019990-protein

>TCONS_00019990-protein ID=TCONS_00019990-protein|Name=TCONS_00019990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MPAHLDLKKNANPKTAIQQKGNLLKSPLEGSVVNEHLVGFHNNNGNQQQQ
SYEVNEQQQLNHYLIYHSNLLQRFQNSSRIIQQRQLLEQQQCQNSPIQYI
NRQSPSISIDLPIQILTSCIEWAKSVPLLNALPATDQISLLCSSWSELFI
LTSSQYCACQGINAKTFSRLTRINRQFKSPSHEHSMQMLEEIIDKFKSMN
TDTNEFSCLKALALFNPDTPRISNAALIEHLQEKAQTELEDYLRQSSSHP
FSCRYGKLLLRLPALSLIQADTMETMFFDGNLGNFSVVSFIRSIITSAND
TKFGRQINFNQKDLGNALASNLSH
Run BLAST on NCBI

transcript from alignment at sc0000345:88087..97655-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019990 ID=TCONS_00019990|Name=TCONS_00019990|organism=Clytia hemisphaerica|type=transcript|length=9569bp|location=Sequence derived from alignment at sc0000345:88087..97655- (Clytia hemisphaerica)
TGTTGGTAAAAACAGGGTCATTTAGTTTGATACCGTAAGAGGAAATAAAG
ACCCTGGTTTTTTGTGTTGTTGTTTTTTCTGGCAAGTCTGATTGAAAATC
TGTTAACCTTGATAAAGTAAAGAAGCAAGTTTTTTTATTCAATGAGCTGA
AGTAAAGTTTCCGGGTTTGTTTCTCGAGTAAAACAAATTTATCCACGAGA
AAGCTTCTGATGAGGAAGTGATTGGTTTCAGGAAATTTGATTGTGCGGTA
TATTATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
GTAAGCTAAGAAGTCTTCAAGAAAGAAAATACCTTGAAGGAAGTAATTTA
ATTTGAAGGATGTTGGATATTTTTGGCAAAAAAACCGTCATTAAACAGGC
AAAAAACCTGAAATATCACCAAAGCTGCCGATTCATTCAAATTTTCTTTC
CGTCAAAATTTCTTCCTTCTTAAGGTAATTTGTATTTTGTAAGTCCATGC
GTCGTTCCAACTTGTTTTAACTAAACATTCATGGAATTCCTACTAAAATA
CTTTTAAAGCCCTCAAATAACATCACTCCCAAAATTACAAAACCCAAGCA
CAGAAACCAGATCCGATTCCTCGAACCCTGGTCTGACAATGTATTGTTTT
AGCTTTTTGTTCAATTTTCTATTGTTAGAAACAAAAGACAAGTCGCGATT
TGCATACTTTTTTATCACGTTACCAAAATCTCATCTTGGGATTGGTCTAT
TTTCTAATCACGTGATAAAAAAATTTGCAAAATAAATCGATTTTGGTAGG
AAAGCTCCATTTTTTAGCAATAAGAAGAGACAAAAGCCTTCCAGACCAGT
GTTATTATACTGACCATGATTTAACCTCTCAATCTCACGTTAAAGTCAAT
CTCTTTTCCTATGCAATCCCTAAAAAAAACCCTAAAAATTCCGTACTCCA
AAAATACTTCTCATTCGCACTTATCATGAGATAAATGAAATTTTTTTTTT
TTCAATTGGTTAACAATACCACGTTGAAAACGATTATTAAATACACCCGC
TTCTCACAGACCCGGTAGGATTTCTTCAGCCAGTGGGGATTAAAATAACG
GACTAACAATCGACGGGGATTAAAATTCCATATTCTTTACTGCTGTGGAT
TTCAATTCTTTTGTTTTCGAGTCAGAAGATTCAGTGGGGATAGGAAAAAT
AGCACAATATTTTTCAGTGAGGATTGATTTATTTGATTATTTTCAATGGG
GACAAAATTTAGAGGATAATTTTCCACCGGGGACGATATTTTGACCAATT
CTTCCAGTGGGAAGGGGTCCCAGTGGGTCTGTGAGAAGGGGGTGTTTAAA
AACATTTTCAAGAAGTGCAAAAGGATTCAGCCTTACAATAATTTCTTTAC
TTCTCTCTTGTTTCTTAGCAATTCAACAAAAAGGTAATTTACTCAAATCA
CCATTAGAAGGGTCAGTAGTCAACGAACATTTGGTAGGTTTCCATAACAA
CAACGGTAACCAACAACAACAGAGCTATGAAGTGAATGAACAACAACAAC
TCAATCACTATCTGATTTACCATTCAAATCTCTTACAAAGATTCCAAAAC
TCTTCAAGGTAAGCACGATTTGCCAGCATGACAATCGGTAATTTCCGGAA
GGGAATTTTCAAAACTTAGTATCTTTCTTTCTCACAGCCCCGGTGGAAGT
TTTTTCCCTCAGTGGGGATAAAAATTTCTATTGAAATCCCACTGGCGACG
GAAATTCTATTGTTTCAAGCCTAAAAGTTCCGGTGGGGATGGTTCTGGAT
TGCAAGTTTCTTCATTGAATTTTAAGTGGGGATAAAAACAAAGTTAATTT
CTAGTGGCGGGCTGAAATTAATTGTAGGGTATTTTTTCCACCGGGGACAA
AATTTTGGGCGTATTTTCCGGTGGGGCTGGGGTCCCAGCGGGTCTGTGAC
ACAGGGTGTTTTTTCTTGGTAATCAAATCAGTTCAGTTTTACACACTCCT
TGTTCAACTATAAACCCTAATAATTCTAATATTGGCTAAATGCAATAATC
ATCGGAGATTTCCAGTTTAACACTAGTCACTGCTCAATATATTGTCTGTC
TAATTCGACCTTTAAAGGTTTTATTTCTACATAAGTGCTTCCGTTTCATA
TCAGAGACATATTTCATATCAGGACGGTGTCTGCTTGTTGTTATATTATG
CTGATATAAGCAAAAAAATGTTTTTCTTTCCCTTTTTCTGACCATTCTTG
CTCCAAATCCGAGTCAATCAAATGTGAAAAAGCTTATGAATTAAAATTGC
TGAGTAAGCAAACGATGTCACTCTTATTTAAAAACAAAACCTTTAAGGGG
ACTTGGATTTTCATTGTCTGTGCACAGACCCAGTATATGGCTAATTTCAA
AATTCATTGCCGTAGAGTTACCACGAAGCGATAAACGTAAGATACAGTCT
GGTACAGAGTAGGATTTTCATCGAGTGTGTCGTATAGTAGGCGAATGTGA
AAAACCTTTTAAAATGCCAGAAATCGAATTAGAGAGAGCGAGAGAGAGAG
AGAGAGAGAGAGAGAGTTTCCAAATACTGAGGAAGTAAAAATAAAAATTG
AAATTGATTCTTTTTAATTTTTTTCAGAATTATCCAACAAAGACAACTTT
TAGAACAGCAACAATGTCAAAATTCACCGATCCAATACATCAACCGGCAG
AGTCCTTCAATTTCCATTGATTTACCAATCCAAATACTAACCAGTTGTAT
TGAATGGGCCAAAAGTGTGCCATTACTTAATGGTAGGTTTACTACATGTT
TTCTTTATAACAACAAACTACATAAGAACATAAGGCTTCGACGCAAATTT
TTTTCCGTAGACGGGCGGAAATATCTTTAATGTTCGGAAATATCATAGCG
TAAAGGTCGGAAATATCCAAAACTCTAAAAATTTGAAAATTTAATGGTCG
GAAATATCCCGCGCTTTTAAAAATGCTTCATCAGCAAAAAAATGTAAACA
AAGATNATTTTGGAGGTGTAAGCCCTAAATATGATGACGACGGTACGGAA
ATTAACAAAGAAAGACAGACAACACAGCTGATGTTCTGTTCTTTGTGACA
CGAATTGATGATGAAAGCGATTTAGATGATGATTGTGAGTGATGGGGAAG
ATATCAGAAACATTTTTGATGTTCTCAATGACAAGGTGACGACGAAGATG
AATAAGAGATTTACACGTTTTGTCTGTATTTCGTTGGAAATTCTTTAGTT
CGTTCTGTCTCTACAAGGAAAAAATCATAACATTTTTTTTTTGGGGGGGG
GCGCATTTATTAATTTCGCATTAATTTATTCTCGCATTAAGTCCAATCTG
GATCAACTATCAGCAGCTTCTCTTTTATTGCTTTCTTGAAAGGTTTCCCT
TCATTGTGGAAGCTGATAGGCTTGTCCAAGTTTTTTACTTTCGGTTTTAA
ACCATTGCTGATCTCATCAATCTATGCTATGATTTGATTGCTTCTGCAAA
AACCTTTAGGACTTGACTGTGACGTCACAGTGATATCCATCATGGAAGTC
TATCGTGGCTTGGATCAAGAGATTTAAGTTTTGGTCTTTCATACTTCTAT
TGTGGCGATTCTATAGAGGTTTTGGGTTTCGGATTTGACGATCTCACTTT
TAGTGTAAAGATTGGAATACTGCTGAAATCGATAACTTGATGATCAAAGC
ATTTTTAAAAGCGCGGGATATTTCCGACCATCAAATGATGTTTCCGACCA
TTAAATTTTCAAATTTTCAGAGTTTTGGATATTTCCGACCATCAAATGAT
ATTTCCGACCATTACGTTATGATATTTCCGACCATTAAAGATATTTCCAC
CCGTCTACGGAAAAAAAATTTGCGGCTTCGACGGCCAAAATGTTTACAAC
AAGTTTAGAACATTTCAAGGTTTTACGGAACCTAAAACACTCGATTTCTG
AGGAAAATGGGTAAAAATGGTCAAAAATTGGTGAAAATAAGAACATGTTA
AGAACATTTTTAGGCTTAAATCTCAACAAGTTAAGAACATTCAAAATTTT
TTGATGTTCTCTTAAAAAAAAAGAGCATGTACACATTTCGCCAAATCTTC
TTTGTACTTCGTCTTCATTTTGTTTACGTTCATTTTGATTTTCTTGTTTT
TAGGCCTTTTTGCTTAAATATTTTTAAAATGTTCTTATTTTCACCATTTT
GTGAGTATTTTTGTCTCCGAAGCCTTAAAATGTTCTCAAAGTGTTCATGG
TATTTCGGCCATCGAAACCTTATGTTCTTATATAGTTTGTTCTTATAAAA
AACATCCCAAATAATCACATGTTATCTCAACTTTCTCAAACACATGACCC
AATAAGGGCACCAGAGCCTCACTGGTCAAGGATATAAAATTTAATTTTTC
AATATCGAGAAAAAAAGAACGAATTTACAATTGCTACAAAGTGTTTCATG
CTGACGCAATCTTCAGGCAATGCAATGTATTGTAGATTTATATTTTAAAT
CTTTAAATATGATTTAAAAAAAGTTGAAGTAATATACTTTTTATAATTTC
AAAATTTTGAAATAAATTAGGGACATGTTTTTTTTTTTTGACTGTACCAA
AATGCCGATTTTCAACCAACCCGGTTCAAATCGGCACTAACAGAGACAGC
TGAACCCTTCCTTATCGTTATTCAAAAATAAGAAAATAGATTAGTAGCTC
TGTCCGATACTTTTTGTCCGATCTTAATAGCTTTTATGGAACTTAAGATA
TCGCTTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCAAATTG
ATCATTTTTGAAATCTAGGTGCTAATTCTAATCGTATATATTTTCCTGAC
AAGTCTATCTATCGGGGAGGTGATTTGAGATTTTTGTTTAGCTGATAAGA
AAGGAACGAACTAAAGAAAACGGAAATTGTTAAAATGAGTGAAAAATTAT
TAAAAAAGTCCTTTGTTTGTTTTGATCATAACTCACTCCGGCCTTTAAAA
AATTACTCCTCAGGCTATTTTATGATTTTAGGCTACCTCAGGAATGCATA
GAAACCTCCTCAGGACCGAATAATACCGAGTTAATGTATTTGCACTTTGG
AGGACGGTAGAGTGACTGAAGCGATTTGGAAAAACCCGCAATTCCACCCC
GCAAAATCGAGGACCGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGT
CAGGATCTACTCAAAATAGAACCTTACCGTCTCCGTCGCTGAAAAACACA
CATACATAAACTCGCTAATGAGTCATGGAGTGAGATATGATCCAAAACAC
TCCAGGATTAATTAATCCTGAAATACTCCGAATTTTGAAATTTCAAATAG
CTCATTTTAAAGCCCTTCCCAAATTTCAATACATATCAAAATTTTGGGAA
AATTCATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAC
ATGTCCTTAGACAATTTTTGAATTTGTTCTACAAAGTTACCACTCTTTAA
AATGGTGTTCAACAACAATATATAAATATGATTTCAATCATCTTTATTTA
CAGCTCTACCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGT
GAACTTTTCATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAA
TGCTAAGACATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCAC
CATCACACGAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTC
AAATCTATGAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGC
ACTTTTTAATCCAGGTAAATATTTCATCCAAATCTTTAAATACAGACACA
AATGAATTTTCATGTTTGAAAGCGTTGGCACTTTTCAATCCAGGTAAATA
TTTCAAAACATCGAACAATTAAATTGTGAATTTCTTATCTACCGATCGAT
TACTTCCATTGTACCCACTATTTTTACAAAATTTAAGGCTCGATCCATTT
TACTAAGGAACCACAGTAAACTCTCACTTACTCGAACTTCTATTATTTGA
ATATTTCTGTAATTCGAATTTCCAGTCTCCAACAAGACACCCCTGTCTCT
GTGCCCCAGTGGGTGTTGATTACCCAGTGGGGTGAGAATCAAAAAACATG
AAATTCACTGGGGTGAAAAATATTCTTTCAAATATTGAGTGGGGTGGCGA
AAATTTCCTTGACATTCACTGGGGTGAGAAAGAATTTTTTGCATGAGCTA
AATTTTGGTTAGCCTGTGTGTTAGACTGTAGACCGCTTAATTTTATCGTG
TTTTAACGATATAAGGTACTGGCTAACTTTTGGTTTAGTGCTAGTAAAAA
TCTGCTTCTTACATGCTACTAAATATAACTAGGAATATCATCTTGATCAG
ATGGATCTATTCTTACACTGTAACAGGAAATGTAATGAGGTCTGGGGGAA
GGGGCTATAGAGGAGCAGTACGTTATATCAAATTTTATGAACTCTGGAAC
CTAGTAATGTTTAGTCAACATGATTTAAGTAGAGGTCTTTCTTTCAGTAT
TTACGCAAGTGAGAAAGCCTCTCGAAAACCTTTCAGGCTATAACCTAGCT
TTAAAGAAAGAAAGGTACAAGTACAACTGTTTGCGCTGACAGAGAAATTT
TTGATTTTCAACCCCTCTCTTTTGGCATTTTCTACGTTTTAAACGTAGAC
CATGACATAGAAGTCGGGTTAAATACAGTTAATATATTGAAGTGGATTTT
TTTGGCTTTTTCGGATATTTCACCTTTAAAGAAGGTGAAGGAGAAAATTC
TAGTGGGGTGATTTTTTGAAAGAGAAGTTCTACTGGGGTACGTTAAAATA
AGGGCAATTCGAGTGGGGTATGTGTAAACTTTTTATCATTTTCAATGGGG
TGTTTTTTTACTACAACATTCCAGTGGGGTGAGTGATTTTTCCAGTGGGG
CTGAAAAATGAGCCATTTTTGGAAAAAGATTTCACTGGGGTGGCCAGTGG
GGTGGATCCCACTGGGTCACAGAGGCAGGGGTGTAACAAGAAGAAACCCT
CTTTCTATTCAGGATATGCACCATTGATTACAATGTCTTCCACGTACCCA
ACAACTGTTTGGTTGAAAGTAAGTGACGTATTGACTGATTTTACGTCACT
TAAAATCATCTATTGGTTCCATGATGTAATGTCAGAAGACATTGCAATGG
TGCATATCATGAATAGTTTGAATTTCTCTGTAATTCGAACAGATATGATT
CCCCATTCGACTTCGAATCAATGAGGATCAACTGTGCTGTTCTTTCAACA
AATCGCTCGTGTGATTTTTTGACTTTTTCATCGGCAAAGTCAGCTCATAT
TAAAACATTTGATTAACAATTCCCAATAACAAACACAAAGGAATGATCCA
TGCTTAAAGATAATACAACCCATAATTTCTTCTCCTTTCTTTTAGACACC
CCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAAGAAAAAGCCCA
AACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCATCCATTCTCGT
GTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTATCACTTATACAA
GCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTTGGAAATTTTTC
AGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAATGATACCAAGT
TTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCAACGCTCTAGCT
TCCAATCTTTCACATTAGTCTGGGTAGACAGGTTTAGAAGGTTTTTTTAA
TTTTAGACCAACTTCGGGGAGGTATGTCTGCCTTGGTTCCTGCTTAGCAT
GTAAAAACATGTTCATCGCCACGAATTATCTATCGATACTTGAAGGTTTT
AATTTTACATATGTGTTGCGTTTTCATATCAGACACATATTTCATATCAG
GACAGTGTCTGACTATTGTTATATTGTGCTGATATAAGCAAAGCAATATT
TTTCTTTTCCTCTTTCTAACCAATCTTGCTCCACATCCGTATCAATTCAA
TGTGAAGTTTGTAAATTACAAGTGATGAGTAAGCAAACGATACCACTCTT
ATGTAAAAACAAAACCTTTAACTTAGCTAATGCAAGATATACAAATGGTA
AACTTACCTCAAATAACGGACGGATACCATCAAATTTATTCTACAATTCT
TCTTCGCAATGTTAGCGTTTTAACTTTGCTGAGTAATTTGTCGAAATTGG
CCTGAATCGAAGAAAAAGAAAACATTGATATAATAAGCCATATAATTTTA
AGGATAATTACTGCAGCTTATGACTGAAAAACAAAAGAGAATTGTGGGAA
AAATAAGTCGAAAGAAATTTTTGTCATGGAAGAATTTGTTGATTTTTTTG
CAAAAGATTCTGTCTTCGATTGAACAGAGAAGAAGCTTGCTCAACCTCAT
AAAATTTCAGTTCATTTCACCGGTAAAATTTCTTCGGAAGCAAAAAAGCA
AAAAAGTGGGCGTGGCGGATACTTAAAATTTGGACAAAAGAATCTGAACA
CAGTTTGTGAAAAGTTCTCTTAGGGGCTTTCAATAACGCAAATTTTTCCT
CGCCAAGTATTGATTAGTTTATTTTTCTCGGACAATACCCCTGACATACG
TACGACCCTTGCAAACGTAGTCGGGTGGGCGGGCGCTCAGCCGGATAGGA
TAGGTATAAAGTTAAACATACCCTATTCGTCACATAGAATCTTATTTAGA
AAACTCTATAAATATTATACATTATACGGAAGATAGAAAATATTTTTGAT
TATATTTTTGTAATAAAGAAATCTATATTATTTTTGCGAATAAATTTATT
TTTTTAAATTGAAAAAATT

Coding sequence (CDS) from alignment at sc0000345:88087..97655-

>TCONS_00019990 ID=TCONS_00019990|Name=TCONS_00019990|organism=Clytia hemisphaerica|type=CDS|length=4875bp|location=Sequence derived from alignment at sc0000345:88087..97655- (Clytia hemisphaerica)
ACACCCCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAAGAAAAA
GCCCAAACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCATCCATT
CTCGTGTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTATCACTTA
TACAAGCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTTGGAAAT
TTTTCAGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAATGATAC
CAAGTTTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCAACGCTC
TAGCTTCCAATCTTTCACATTAGCTCTACCGGCAACCGACCAAATCTCCT
TACTCTGTTCCAGCTGGAGTGAACTTTTCATTCTAACCTCATCACAGTAC
TGCGCATGCCAGGGAATCAATGCTAAGACATTCTCAAGATTGACCAGAAT
CAACCGGCAATTCAAATCACCATCACACGAGCACTCCATGCAAATGTTGG
AGGAGATAATCGATAAATTCAAATCTATGAATACAGACACTAATGAATTT
TCATGTTTAAAAGCTTTGGCACTTTTTAATCCAGAATTATCCAACAAAGA
CAACTTTTAGAACAGCAACAATGTCAAAATTCACCGATCCAATACATCAA
CCGGCAGAGTCCTTCAATTTCCATTGATTTACCAATCCAAATACTAACCA
GTTGTATTGAATGGGCCAAAAGTGTGCCATTACTTAATGCAATTCAACAA
AAAGGTAATTTACTCAAATCACCATTAGAAGGGTCAGTAGTCAACGAACA
TTTGGTAGGTTTCCATAACAACAACGGTAACCAACAACAACAGAGCTATG
AAGTGAATGAACAACAACAACTCAATCACTATCTGATTTACCATTCAAAT
CTCTTACAAAGATTCCAAAACTCTTCAAGATGCCCGCACATCTTGATTTG
AAGAAGAATGCGAATCCAAAAACAGACACCCCAAGAATAAGCAATGCAGC
TCTGATCGAACATTTACAAGAAAAAGCCCAAACAGAACTTGAAGATTACC
TACGACAGAGCTCTTCTCATCCATTCTCGTGTCGCTACGGAAAATTACTG
CTTCGTTTACCGGCTCTATCACTTATACAAGCAGACACCATGGAAACAAT
GTTTTTCGACGGAAATCTTGGAAATTTTTCAGTAGTGAGTTTTATCAGAT
CAATTATAACGTCGGCAAATGATACCAAGTTTGGAAGGCAAATCAACTTC
AATCAAAAGGATCTCGGCAACGCTCTAGCTTCCAATCTTTCACATTAGCT
CTACCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGTGAACT
TTTCATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAATGCTA
AGACATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCACCATCA
CACGAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTCAAATC
TATGAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGCACTTT
TTAATCCAGAATTATCCAACAAAGACAACTTTTAGAACAGCAACAATGTC
AAAATTCACCGATCCAATACATCAACCGGCAGAGTCCTTCAATTTCCATT
GATTTACCAATCCAAATACTAACCAGTTGTATTGAATGGGCCAAAAGTGT
GCCATTACTTAATGCAATTCAACAAAAAGGTAATTTACTCAAATCACCAT
TAGAAGGGTCAGTAGTCAACGAACATTTGGTAGGTTTCCATAACAACAAC
GGTAACCAACAACAACAGAGCTATGAAGTGAATGAACAACAACAACTCAA
TCACTATCTGATTTACCATTCAAATCTCTTACAAAGATTCCAAAACTCTT
CAAGATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
ACACCCCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAAGAAAAA
GCCCAAACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCATCCATT
CTCGTGTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTATCACTTA
TACAAGCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTTGGAAAT
TTTTCAGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAATGATAC
CAAGTTTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCAACGCTC
TAGCTTCCAATCTTTCACATTAGCTCTACCGGCAACCGACCAAATCTCCT
TACTCTGTTCCAGCTGGAGTGAACTTTTCATTCTAACCTCATCACAGTAC
TGCGCATGCCAGGGAATCAATGCTAAGACATTCTCAAGATTGACCAGAAT
CAACCGGCAATTCAAATCACCATCACACGAGCACTCCATGCAAATGTTGG
AGGAGATAATCGATAAATTCAAATCTATGAATACAGACACTAATGAATTT
TCATGTTTAAAAGCTTTGGCACTTTTTAATCCAGAATTATCCAACAAAGA
CAACTTTTAGAACAGCAACAATGTCAAAATTCACCGATCCAATACATCAA
CCGGCAGAGTCCTTCAATTTCCATTGATTTACCAATCCAAATACTAACCA
GTTGTATTGAATGGGCCAAAAGTGTGCCATTACTTAATGCAATTCAACAA
AAAGGTAATTTACTCAAATCACCATTAGAAGGGTCAGTAGTCAACGAACA
TTTGGTAGGTTTCCATAACAACAACGGTAACCAACAACAACAGAGCTATG
AAGTGAATGAACAACAACAACTCAATCACTATCTGATTTACCATTCAAAT
CTCTTACAAAGATTCCAAAACTCTTCAAGATGCCCGCACATCTTGATTTG
AAGAAGAATGCGAATCCAAAAACAGACACCCCAAGAATAAGCAATGCAGC
TCTGATCGAACATTTACAAGAAAAAGCCCAAACAGAACTTGAAGATTACC
TACGACAGAGCTCTTCTCATCCATTCTCGTGTCGCTACGGAAAATTACTG
CTTCGTTTACCGGCTCTATCACTTATACAAGCAGACACCATGGAAACAAT
GTTTTTCGACGGAAATCTTGGAAATTTTTCAGTAGTGAGTTTTATCAGAT
CAATTATAACGTCGGCAAATGATACCAAGTTTGGAAGGCAAATCAACTTC
AATCAAAAGGATCTCGGCAACGCTCTAGCTTCCAATCTTTCACATTAGCT
CTACCGGCAACCGACCAAATCTCCTTACTCTGTTCCAGCTGGAGTGAACT
TTTCATTCTAACCTCATCACAGTACTGCGCATGCCAGGGAATCAATGCTA
AGACATTCTCAAGATTGACCAGAATCAACCGGCAATTCAAATCACCATCA
CACGAGCACTCCATGCAAATGTTGGAGGAGATAATCGATAAATTCAAATC
TATGAATACAGACACTAATGAATTTTCATGTTTAAAAGCTTTGGCACTTT
TTAATCCAGAATTATCCAACAAAGACAACTTTTAGAACAGCAACAATGTC
AAAATTCACCGATCCAATACATCAACCGGCAGAGTCCTTCAATTTCCATT
GATTTACCAATCCAAATACTAACCAGTTGTATTGAATGGGCCAAAAGTGT
GCCATTACTTAATGCAATTCAACAAAAAGGTAATTTACTCAAATCACCAT
TAGAAGGGTCAGTAGTCAACGAACATTTGGTAGGTTTCCATAACAACAAC
GGTAACCAACAACAACAGAGCTATGAAGTGAATGAACAACAACAACTCAA
TCACTATCTGATTTACCATTCAAATCTCTTACAAAGATTCCAAAACTCTT
CAAGATGCCCGCACATCTTGATTTGAAGAAGAATGCGAATCCAAAAACAG
ACACCCCAAGAATAAGCAATGCAGCTCTGATCGAACATTTACAAGAAAAA
GCCCAAACAGAACTTGAAGATTACCTACGACAGAGCTCTTCTCATCCATT
CTCGTGTCGCTACGGAAAATTACTGCTTCGTTTACCGGCTCTATCACTTA
TACAAGCAGACACCATGGAAACAATGTTTTTCGACGGAAATCTTGGAAAT
TTTTCAGTAGTGAGTTTTATCAGATCAATTATAACGTCGGCAAATGATAC
CAAGTTTGGAAGGCAAATCAACTTCAATCAAAAGGATCTCGGCAACGCTC
TAGCTTCCAATCTTTCACATTAGCTCTACCGGCAACCGACCAAATCTCCT
TACTCTGTTCCAGCTGGAGTGAACTTTTCATTCTAACCTCATCACAGTAC
TGCGCATGCCAGGGAATCAATGCTAAGACATTCTCAAGATTGACCAGAAT
CAACCGGCAATTCAAATCACCATCACACGAGCACTCCATGCAAATGTTGG
AGGAGATAATCGATAAATTCAAATCTATGAATACAGACACTAATGAATTT
TCATGTTTAAAAGCTTTGGCACTTTTTAATCCAGAATTATCCAACAAAGA
CAACTTTTAGAACAGCAACAATGTCAAAATTCACCGATCCAATACATCAA
CCGGCAGAGTCCTTCAATTTCCATTGATTTACCAATCCAAATACTAACCA
GTTGTATTGAATGGGCCAAAAGTGTGCCATTACTTAATGCAATTCAACAA
AAAGGTAATTTACTCAAATCACCATTAGAAGGGTCAGTAGTCAACGAACA
TTTGGTAGGTTTCCATAACAACAACGGTAACCAACAACAACAGAGCTATG
AAGTGAATGAACAACAACAACTCAATCACTATCTGATTTACCATTCAAAT
CTCTTACAAAGATTCCAAAACTCTTCAAGATGCCCGCACATCTTGATTTG
AAGAAGAATGCGAATCCAAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011229XLOC_011229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019990-exon-sc0000345-1575043694:97356..97655TCONS_00019990-exon-sc0000345-1575043694:97356..97655Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1575043694:96048..96237TCONS_00019990-exon-sc0000345-1575043694:96048..96237Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1575043694:94874..95028TCONS_00019990-exon-sc0000345-1575043694:94874..95028Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1575043694:91142..91402TCONS_00019990-exon-sc0000345-1575043694:91142..91402Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1575043694:88087..89510TCONS_00019990-exon-sc0000345-1575043694:88087..89510Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1510915933:97356..97655TCONS_00019990-exon-sc0000345-1510915933:97356..97655Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1510915933:96048..96237TCONS_00019990-exon-sc0000345-1510915933:96048..96237Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1510915933:94874..95028TCONS_00019990-exon-sc0000345-1510915933:94874..95028Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1510915933:91142..91402TCONS_00019990-exon-sc0000345-1510915933:91142..91402Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1510915933:88087..89510TCONS_00019990-exon-sc0000345-1510915933:88087..89510Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1491911889:97356..97655TCONS_00019990-exon-sc0000345-1491911889:97356..97655Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1491911889:96048..96237TCONS_00019990-exon-sc0000345-1491911889:96048..96237Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1491911889:94874..95028TCONS_00019990-exon-sc0000345-1491911889:94874..95028Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1491911889:91142..91402TCONS_00019990-exon-sc0000345-1491911889:91142..91402Clytia hemisphaericaexon
TCONS_00019990-exon-sc0000345-1491911889:88087..89510TCONS_00019990-exon-sc0000345-1491911889:88087..89510Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019990-proteinTCONS_00019990-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:88087..97655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0669251	0.0326974	0.114587	0.26008	0	0	0	0.933956	0	0	0.00123237	0.523624	0.801041	0.107721	0	0	0	0	0.142443	0	0	7.13744e-08	0.652324	0	0.71844	0.554527	0	0	0.130136	0.113539
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
Blast
[Close]
BLAST of TCONS_00019990 vs. Swiss-Prot (Human)
Match: COT1 (COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.024e-29
Identity = 73/200 (36.50%), Postives = 118/200 (59.00%), Query Frame = 3 
Query:  582 DLPIQILTSCIEWAKSVPLLNALPATDQISLLCSSWSELFILTSSQ---------YCACQGINAKTFSRLTRINRQFKSPSHEHSMQMLEEIIDKFKSMNTDTNEFSCLKALALFNPDTPRISNAALIEHLQEKAQTELEDYLR-QSSSHPFSCRYGKLLLRLPALSLIQADTMETMFFDGNLGNFSVVSFIRSIITSAN 1151
            +L  ++L S +EWA+++P    L  TDQ+SLL  +WSELF+L ++Q           A  G++A   S     +R      H   +++ +E ++K K+++ D+ E+SCLKA+ LF  D   +S+AA IE LQEK+Q  LE+Y+R Q  + P   R+GKLLLRLP+L  + +  +E +FF   +G   + + IR ++ S +
Sbjct:  221 ELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMS----ADRVVAFMDH---IRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPS--RFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 411
The following BLAST results are available for this feature:
BLAST of TCONS_00019990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COT11.024e-2936.50COUP transcription factor 1 OS=Homo sapiens GN=NR2... [more]
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