TCONS_00019990-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019990-protein
Unique NameTCONS_00019990-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019990-protein ID=TCONS_00019990-protein|Name=TCONS_00019990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MPAHLDLKKNANPKTAIQQKGNLLKSPLEGSVVNEHLVGFHNNNGNQQQQ
SYEVNEQQQLNHYLIYHSNLLQRFQNSSRIIQQRQLLEQQQCQNSPIQYI
NRQSPSISIDLPIQILTSCIEWAKSVPLLNALPATDQISLLCSSWSELFI
LTSSQYCACQGINAKTFSRLTRINRQFKSPSHEHSMQMLEEIIDKFKSMN
TDTNEFSCLKALALFNPDTPRISNAALIEHLQEKAQTELEDYLRQSSSHP
FSCRYGKLLLRLPALSLIQADTMETMFFDGNLGNFSVVSFIRSIITSAND
TKFGRQINFNQKDLGNALASNLSH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011229XLOC_011229Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019990TCONS_00019990Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001723Nuclear hormone receptorPRINTSPR00398STRDHORMONERcoord: 132..148
score: 44.6
coord: 257..274
score: 36.27
coord: 111..132
score: 28.44
coord: 199..214
score: 35.36
IPR000536Nuclear hormone receptor, ligand-binding domainSMARTSM00430holicoord: 110..269
e-value: 1.6E-31
score: 120.7
IPR000536Nuclear hormone receptor, ligand-binding domainPFAMPF00104Hormone_recepcoord: 114..278
e-value: 2.0E-28
score: 99.3
IPR000536Nuclear hormone receptor, ligand-binding domainSUPERFAMILY48508Nuclear receptor ligand-binding domaincoord: 59..286
NoneNo IPR availableGENE3D1.10.565.10coord: 31..308
e-value: 1.0E-45
score: 155.5

Blast
[Close]
BLAST of TCONS_00019990-protein vs. Swiss-Prot (Human)
Match: COT1 (COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.045e-32
Identity = 73/200 (36.50%), Postives = 118/200 (59.00%), Query Frame = 0 
Query:  110 DLPIQILTSCIEWAKSVPLLNALPATDQISLLCSSWSELFILTSSQ---------YCACQGINAKTFSRLTRINRQFKSPSHEHSMQMLEEIIDKFKSMNTDTNEFSCLKALALFNPDTPRISNAALIEHLQEKAQTELEDYLR-QSSSHPFSCRYGKLLLRLPALSLIQADTMETMFFDGNLGNFSVVSFIRSIITSAN 299
            +L  ++L S +EWA+++P    L  TDQ+SLL  +WSELF+L ++Q           A  G++A   S     +R      H   +++ +E ++K K+++ D+ E+SCLKA+ LF  D   +S+AA IE LQEK+Q  LE+Y+R Q  + P   R+GKLLLRLP+L  + +  +E +FF   +G   + + IR ++ S +
Sbjct:  221 ELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMS----ADRVVAFMDH---IRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPS--RFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS 411
The following BLAST results are available for this feature:
BLAST of TCONS_00019990-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COT13.045e-3236.50COUP transcription factor 1 OS=Homo sapiens GN=NR2... [more]
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