TCONS_00019968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019968
Unique NameTCONS_00019968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019968 ID=TCONS_00019968|Name=TCONS_00019968|organism=Clytia hemisphaerica|type=transcript|length=329bp
NNATTCAATTCTTTAAGTAGTTTTACGACTCCGTTTTTGGTAACAATGAT
GTCATTGATCTTTTTTCCTTTAGGGCCTAATGGTGTTGGGGTTTTACCAT
AATCTTCTGTGAAGACACTTGTGAATTGGTTATTTAGAATCTCTGCTAGT
TCCTCCTCTTTGGTATGGATTTCGTTGTTTTCACCCAAGAGAGGTGATAA
ACCACAAATGTCTGTTCTTTTGGATTTCACAAATGAGAAGAATTTCTTGc
tatttttcttattattgcaaatgttttctttgatgtaggTGTTGTATACG
TTTTGGCAGGTCTTTcttgcaaattttgc
Run BLAST on NCBI

protein sequence of TCONS_00019968-protein

>TCONS_00019968-protein ID=TCONS_00019968-protein|Name=TCONS_00019968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
AKFARKTCQNVYNTYIKENICNNKKNSKKFFSFVKSKRTDICGLSPLLGE
NNEIHTKEEELAEILNNQFTSVFTEDYGKTPTPLGPKGKKINDIIVTKNG
VVKLLKELN
Run BLAST on NCBI

transcript from alignment at sc0000339:330466..330794

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019968 ID=TCONS_00019968|Name=TCONS_00019968|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at sc0000339:330466..330794 (Clytia hemisphaerica)
gcaaaatttgcaagAAAGACCTGCCAAAACGTATACAACAcctacatcaa
agaaaacatttgcaataataagaaaaatagCAAGAAATTCTTCTCATTTG
TGAAATCCAAAAGAACAGACATTTGTGGTTTATCACCTCTCTTGGGTGAA
AACAACGAAATCCATACCAAAGAGGAGGAACTAGCAGAGATTCTAAATAA
CCAATTCACAAGTGTCTTCACAGAAGATTATGGTAAAACCCCAACACCAT
TAGGCCCTAAAGGAAAAAAGATCAATGACATCATTGTTACCAAAAACGGA
GTCGTAAAACTACTTAAAGAATTGAATNN

Coding sequence (CDS) from alignment at sc0000339:330466..330794

>TCONS_00019968 ID=TCONS_00019968|Name=TCONS_00019968|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0000339:330466..330794 (Clytia hemisphaerica)
gcaaaatttgcaagAAAGACCTGCCAAAACGTATACAACAcctacatcaa
agaaaacatttgcaataataagaaaaatagCAAGAAATTCTTCTCATTTG
TGAAATCCAAAAGAACAGACATTTGTGGTTTATCACCTCTCTTGGGTGAA
AACAACGAAATCCATACCAAAGAGGAGGAACTAGCAGAGATTCTAAATAA
CCAATTCACAAGTGTCTTCACAGAAGATTATGGTAAAACCCCAACACCAT
TAGGCCCTAAAGGAAAAAAGATCAATGACATCATTGTTACCAAAAACGGA
GTCGTAAAACTACTTAAAGAATTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011215XLOC_011215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019968-exon-sc0000339-1491911889:330466..330794TCONS_00019968-exon-sc0000339-1491911889:330466..330794Clytia hemisphaericaexon
TCONS_00019968-exon-sc0000339-1510915933:330466..330794TCONS_00019968-exon-sc0000339-1510915933:330466..330794Clytia hemisphaericaexon
TCONS_00019968-exon-sc0000339-1575043694:330466..330794TCONS_00019968-exon-sc0000339-1575043694:330466..330794Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019968-proteinTCONS_00019968-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:330466..330794 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15927	2.75316	3.31672	4.76075	1.59473	1.89027	1.34249	2.60917	1.88867	2.1601	2.58581	2.2981	2.78301	0	1.65539	1.26107	1.3316	1.96916	0.628538	0.98658	2.45374	0.727922	0.338972	0	4.76119	3.76979	1.21613	1.29789	2.29694	1.33727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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