TCONS_00019964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019964
Unique NameTCONS_00019964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019964 ID=TCONS_00019964|Name=TCONS_00019964|organism=Clytia hemisphaerica|type=transcript|length=374bp
ataaattatcttgtccctAGGTTACAGCTATGCTGTAAAAGATAAATCAA
TTAAATGATGATATCATGAACAaaatttatgctggagtacTTAGTTAGTC
AAAAGACTGTCAGGTTCTCCCGAACAACTATCAAACCAATTGAATGCCAT
TGAAGGATTtaagtttgatttaaaaaataatcaaacacTAATTGAGCACT
CACAATTTTCAAAGCAGTATGAGTTCAATTTAGTTCTGTCGGCAAAGAGT
TCAATTAGTTCAATGATATTCAATCCTACCCTCTTCCTTCACTTCCAAAA
TTTTTATCAGGCACGTGATTGTCATTTCAATAGTTCACATACTTCAGGTT
CACCCCAATATTTATCTATCCAGC
Run BLAST on NCBI

transcript from alignment at sc0000339:245028..245401

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019964 ID=TCONS_00019964|Name=TCONS_00019964|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0000339:245028..245401 (Clytia hemisphaerica)
GCTGGATAGATAAATATTGGGGTGAACCTGAAGTATGTGAACTATTGAAA
TGACAATCACGTGCCTGATAAAAATTTTGGAAGTGAAGGAAGAGGGTAGG
ATTGAATATCATTGAACTAATTGAACTCTTTGCCGACAGAACTAAATTGA
ACTCATACTGCTTTGAAAATTGTGAGTGCTCAATTAgtgtttgattattt
tttaaatcaaacttaAATCCTTCAATGGCATTCAATTGGTTTGATAGTTG
TTCGGGAGAACCTGACAGTCTTTTGACTAACTAAgtactccagcataaat
ttTGTTCATGATATCATCATTTAATTGATTTATCTTTTACAGCATAGCTG
TAACCTagggacaagataatttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011211XLOC_011211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019964-exon-sc0000339-1491911889:245028..245401TCONS_00019964-exon-sc0000339-1491911889:245028..245401Clytia hemisphaericaexon
TCONS_00019964-exon-sc0000339-1510915933:245028..245401TCONS_00019964-exon-sc0000339-1510915933:245028..245401Clytia hemisphaericaexon
TCONS_00019964-exon-sc0000339-1575043694:245028..245401TCONS_00019964-exon-sc0000339-1575043694:245028..245401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:245028..245401 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.215017	0.209675	0.730358	0	0	0.687395	0	0.258798	0.905952	0.448867	0.217841	0.2864	0.286002	0.891046	0.122094	1.31025	0.322824	0.992654	0.457135	0.956717	1.24734	0.912614	0	0.224135	0.461708	0.412063	1.47415	1.57326	0.238652	0.729445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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