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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019953 ID=TCONS_00019953|Name=TCONS_00019953|organism=Clytia hemisphaerica|type=transcript|length=3570bpRun BLAST on NCBI protein sequence of TCONS_00019953-protein >TCONS_00019953-protein ID=TCONS_00019953-protein|Name=TCONS_00019953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=993bp MAAAASPINNFLAKQIGVRVIRGPDWKWGKQDGGEGHVGTVRSFESHEEVRun BLAST on NCBI transcript from alignment at sc0000339:308900..324751- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019953 ID=TCONS_00019953|Name=TCONS_00019953|organism=Clytia hemisphaerica|type=transcript|length=15852bp|location=Sequence derived from alignment at sc0000339:308900..324751- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000339:308900..324751- >TCONS_00019953 ID=TCONS_00019953|Name=TCONS_00019953|organism=Clytia hemisphaerica|type=CDS|length=56658bp|location=Sequence derived from alignment at sc0000339:308900..324751- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019953 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1) HSP 1 Score: 1121.69 bits (2900), Expect = 0.000e+0 Identity = 565/1020 (55.39%), Postives = 716/1020 (70.20%), Query Frame = 1
Query: 127 NNFLAKQIGVRVIRGPDWKWGKQDGGEGHVGTVRSFESHEEVVVVWDNGTAANYRCSGAYDLRIFDSGPAGIKHDGTQCCECQSNPIYGTLWKCVECTE-EMCSTCYHNDRHNLRHRFHQLVAPGSNKVLVEPRRKSKKITARGMFPGSRVIRGVDWHWESQDGVAGRRGKITEIQDWSLLLPRSAAYVVWDTGAKNLYRLGSEGMVDLKCVSDAKGPPFYRDHLPMLGEMSVKRTYN-WQVADYVRVDLELEVVQSLQFGHGGWAYGMEEALGNXXXXXXXXXXXXXXXXXYPSGNRWTFNPAVLSKXXXXXXXXXXXXXXXXXASMSLDEAEDGQRPSRGSRTGPFVEGDVVQILNNRDRVKLLQEGHGEWTDAMNETLGKIGSVTQVYQDGDLKVEVNGTSWTFNRKCVVRIGSHRQLHSDEA----KSLLKKLFEGHSSKEPSELLVKAAAEGNLKQINELFKTRAAKVDEVFAGHTALQAACQNGQVEAIKLLLEMQADTEIQDKDGDRAIHHATFCDKETPIRLLIEAGADICSRNKRRQSALHVAVNKGHLKSIETLLELNIHANLQDSEGDTALHDAITKKRDDVVAMLLEQGADISMTNYNGFNAVHHAALRGSAKAIEMLLRKNEKPWVINEQKDDGYTPLHLASLNNHLDVVQLLIKLGGANKDYQSTSLQTPLHLAIQKQHADIVRFLVLEGAKLSLQDKDGDTPLHEALQYHTLAQLKEIHDVDDV-----------QTLITNFGQPNTTKQPTNSALIACFLVAHGADLNVENAKGLKPIDLCPDSDLEKILQKCHKEYLS------TSKAAHKRKEDVNECIVCSQNHRDVIFTPCNHVVTCEGCAVRIKKCLLCRGVVESWRKIDECMVCSDKKANVLFKPCSHVVVCRDCARLMKKCVECRSVIESTVPL-----EEFYHEKKEEIATPSSPKTQ----------DVNVLSKQLEDMKEQIVCVVCLDRRKNMIFLCGHGACQLCGDKLVDCPICRKPIEKRI 3072
N + + +G RV+RGPDWKWGKQDGGEGHVGTVRSFES EEVVVVWDNGTAANYRCSGAYDLRI DS P GIKHDGT C C+ PI G WKC ECT ++C+ CYH D+H+LRHRF+++ PGS +VL+E RRKSKKITARG+F G+RV+RGVDW WE QDG GRRGK+TEIQDWS P SAAYV+WD GAKNLYR+G EGM DLKCV DAKG FYRDH P+LGE + R Q+ D V +DL+LE+VQSLQ GHGGW GM E L + G + G D+D D+VV YPSGNRWTFNPAVL+K ++ + D + + G T F GD+VQ+ + +R+KLLQ GHGEW +AM TLGK+G V Q+Y D DLKVEV GTSWT+N V ++ S S+ + LLKKLFE S + +E LVKAAA G++ ++ +L K V+ AGHTA+QAA QNG V+ +KLLL+ D E +DKDGDRA+HHA F D+ I +L AD+ +RNKRRQ+ LH+AVNKGHL+ ++TLL+ H +LQDSEGDT LHDAI+KKRDD++A+LLE GAD+++TN NGFNA+HHAALRG+ A+ +LL K +PW+++E+KDDGYT LHLA+LNNH++V +LL+ G AN D Q+ + QT LHLA+++QH IVR LV GAKL +QDKDGDTPLHEAL++HTL+QL+++ D+ DV TLI G K+ ++A IACFL A+GADL++ N KG P+DLCPD +L K L KCHKE +S + E + EC+VCS RD +F PC H+ TC C+ R+KKCL+C+ V+S KI+EC+VCSDKKA VLF+PC H+ C +CA LMKKCV+CR+V+E VP + + ++I++ + P Q DV L +QL+D+KEQ +C VCLDR KNMIFLCGHG CQLCGD++ +CPICRK IE+RI
Sbjct: 7 NRVMVEGVGARVVRGPDWKWGKQDGGEGHVGTVRSFESPEEVVVVWDNGTAANYRCSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWSASSPHSAAYVLWDNGAKNLYRVGFEGMSDLKCVQDAKGGSFYRDHCPVLGEQNGNRNPGGLQIGDLVNIDLDLEIVQSLQHGHGGWTDGMFETL-TTTGTVCGIDEDHDIVVQYPSGNRWTFNPAVLTKA-------------------NIVRSGDAAQGAEGG-TSQFQVGDLVQVCYDLERIKLLQRGHGEWAEAMLPTLGKVGRVQQIYSDSDLKVEVCGTSWTYNPAAVSKVASAGSAISNASGERLSQLLKKLFETQESGDLNEELVKAAANGDVAKVEDLLKRPDVDVNGQCAGHTAMQAASQNGHVDILKLLLKQNVDVEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVHQGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTPLHEALRHHTLSQLRQLQDMQDVGKVDAAWEPSKNTLIMGLGTQGAEKK--SAASIACFLAANGADLSIRNKKGQSPLDLCPDPNLCKALAKCHKEKVSGQVGSRSPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGGKSSEDATDDISSGNIPVLQKDKDNTNVNADVQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRI 1003 The following BLAST results are available for this feature:
BLAST of TCONS_00019953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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