TCONS_00019935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019935
Unique NameTCONS_00019935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1137

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019935 ID=TCONS_00019935|Name=TCONS_00019935|organism=Clytia hemisphaerica|type=transcript|length=1137bp
GGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAAT
TCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGG
AAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGA
TGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGAATGGGAAACGG
TCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAAT
ATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGA
AGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTG
ATGATGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATG
CCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGT
TGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCAGTTCAAT
ATAATGAAGAAGTAGAGTTCGATGAAGCCAATCCTGATGATGATAAATAT
GATCCTGAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAA
GAAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAA
AGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTG
GAAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGAATG
GGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCC
GACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAG
GAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGA
AATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAgagTGGG
AAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGG
CGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAA
TGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAA
CACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:294181..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019935 ID=TCONS_00019935|Name=TCONS_00019935|organism=Clytia hemisphaerica|type=transcript|length=4546bp|location=Sequence derived from alignment at sc0000339:294181..298726+ (Clytia hemisphaerica)
GGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAAT
TCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGG
AAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGA
TGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAc
agaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTGGGGGAAC
GATCGGATTTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtccttt
ttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTA
TAATATACTAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAAT
GTCTTTCATCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACT
TTCGTCTTCTTCAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGT
TCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAA
ACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAG
AAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAG
GTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGG
AGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATg
tctctatttctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGT
TCTTAGTTATtgagaaaatattgaatttaagCCCATTCGACTATGAAATA
AGTTGTCAATGTCTTTCACTGCAATATGAAGTCACTCAACTTCacttact
ttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGT
TCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAA
ACCAAAGATTGGGAAATCTCCAGTCGAAGAACCAGTTCAATATAATGAAG
AAGTAGAGTTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAG
GTATTTTTTATTTGGGGAAAGCctttcaatgcaattttacaGGTGACGAG
TTCAGTATTTTTTGCTGGAATTTTTTACGTCTTTTcgttttataagaaat
ttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACA
GTCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAAT
TATTGTTCTTAATGTTGTGAAGAAACAAAAGAGTGGGAAATCTCCAGTCG
AGGAAGAACCAGTTCAATATGAACAAGTGGAAGTTGATGAAGCCAATCCT
GATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttt
tctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGC
TGAAGTTTTGCGCACTCTGACATgtctctatttctttttttgcttgagac
gAGCTNGGGGGAACGATCGGATTTGGCTTATATTTTGCGCACTCTGACAT
GTCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCG
TTCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAAT
AAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAAT
CAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACAGTCGAGAATA
CGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTT
AATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGT
TCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATA
AATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaaca
tcGGGGTGACCTGGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTG
CGCACTCTGACATgtctctatttctttttttgcttgagacgAGCTTTGTA
CGATAGCTTCGCGTTCTTAGTTATtgagaaaatattgaatttaagCCCAT
TCGACTATGAAATAAAAAGTTGCCAATGTCTTTCACCTGCTTTCACTGCA
ATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAA
ACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACG
TAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAG
TCGAAGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAAT
CCTGATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcct
ttcactgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTA
TTTTTGCTGGAATTTTTTACGTctctttgttttataagaaacttttcaaa
atcattttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAA
GAAGATGCCTGATGGTTCAAAGAAAAAGTTCCGCCGACGAACCATTGTTC
TTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAA
CCAGTTCAATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGA
TAAATATGATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCA
CTTTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTC
TCAAACGAGCCAGGTCTACTCAAAtttacattatttttcaaatatctcCT
CTAGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAANGTTG
TCAATGTCTTTCACTGCAATATGAAGTCACTCAACTTCacttactttcgt
tttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAA
GAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAA
AGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTG
GAAGTCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGTATG
TTTTTTTTGGGGAAAcctttcactgaaatttcaggCAATTTTACAGTTTG
CAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTACgtctttttgttt
tataagaaacttttcaaaatcattttaaactTTCTCATTTTCCTCTAGGA
ATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAGAAGAAATTCC
GCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAA
TCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTGATGA
GGCAAATCCTGATGATGATAAATTTGATCCTAAGGTATTGTTTGCACAGA
AtttctttctctctctctcacTTTAAAGCCAATATTGTGCATCTCCGAGT
CATTTGATGTTTTTCAGGTCTCAAACGAGCCAGATCTACTcaaatttaca
atatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACGAT
GCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATG
TTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTT
CAATATGAAGAAGTGGAAGTTGATGAAGCAAATCCTGATGATGATAAATA
TGATCCTAAGGTATAGTTAGCACAGAATTTCTTTCTCTCTCTCACTTTAA
AGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTCAAAC
GAGCCAGGTCTACTCAAAtttacattatttttcaaatatctcCTCTAGGA
ATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCC
GCCGACGAATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGAT
GAGGAGAAACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGT
TGAAATTGATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAGTAA
ATAATTGATGTGACTTTCTTCAGTTTCTCTTACTTCATTACCTATGCCAC
ATTTTGACATCTTgttttttacaatttcttaacTTAACTTGATACATCAC
ATTTTAGGCTTCCCAggcagtcacaacttaaccatcttttaatttttttt
aggagTGGGAAGTTGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGC
GTCAGACGGCGTCGTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGA
TCTGGTGAATGAAAATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAA
ATGCTCCAACACAAGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019935-exon-sc0000339-1491911889:294181..294367TCONS_00019935-exon-sc0000339-1491911889:294181..294367Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:294181..294367TCONS_00019935-exon-sc0000339-1510915933:294181..294367Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:294181..294367TCONS_00019935-exon-sc0000339-1575043694:294181..294367Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1491911889:294645..294830TCONS_00019935-exon-sc0000339-1491911889:294645..294830Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:294645..294830TCONS_00019935-exon-sc0000339-1510915933:294645..294830Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:294645..294830TCONS_00019935-exon-sc0000339-1575043694:294645..294830Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1491911889:295095..295280TCONS_00019935-exon-sc0000339-1491911889:295095..295280Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:295095..295280TCONS_00019935-exon-sc0000339-1510915933:295095..295280Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:295095..295280TCONS_00019935-exon-sc0000339-1575043694:295095..295280Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1491911889:296761..296946TCONS_00019935-exon-sc0000339-1491911889:296761..296946Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:296761..296946TCONS_00019935-exon-sc0000339-1510915933:296761..296946Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:296761..296946TCONS_00019935-exon-sc0000339-1575043694:296761..296946Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1491911889:298179..298376TCONS_00019935-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:298179..298376TCONS_00019935-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:298179..298376TCONS_00019935-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1491911889:298533..298726TCONS_00019935-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1510915933:298533..298726TCONS_00019935-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019935-exon-sc0000339-1575043694:298533..298726TCONS_00019935-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:294181..298726 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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