TCONS_00019929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019929
Unique NameTCONS_00019929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019929 ID=TCONS_00019929|Name=TCONS_00019929|organism=Clytia hemisphaerica|type=transcript|length=2233bp
TaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCAAT
GTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaagaa
atcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTTGG
ATGGCTCTGTGATCAACACTTCTGTTGAGaaaTCAGCCAAAGGAGAAGAA
CTAGTCAATAAAGTAGCTCAAGAACTTGATGTGAAATCGAAAGATTATGT
TGGTCTCCTTTTCAATAATGGAACAAGGcaatGGTTGGATATTCATAAAG
ATATGAAACATCAGTTGGGAGatTCTAAAGCAGAATTTTTATTTCGGGTC
AAATTCTATGAGCCTGAGCCCAGCAAAATTCAAGAAGATCATTTAAGATA
TTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGattAAAAT
GCACAGAAGAAGTAATTGCTCAACTTGGTGCATATACTGCACAAgcTGAA
GTAGGAGACTTCAATTTATCAGAGCATGAGCATGATTACTTGAAAGATTA
TGAGTTTGCTGAGAATACCGATATACTTGAAAGAATCAATTTATTGCACA
AACAACACAGGGGTCAAACACCTTTACAAGCTGAACTTAACTTTTTGGAA
ATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTACATGATGCCATGGA
TACCAATGGGCATGTAGAGATTGGTATTGCTGCTTTAGGAATAAACATCT
ATCGGGATGGAAAGCGTGAACAGCTTTTCAGATGGCAAAATATGCATGAC
TTCAATTACAACCGAAGAAAATTCACCATTAAACTCAAACAACCAGTGAG
CGACAATGACAATAAGAAGAATTACGTATATTATTTCGAATCTGCTAAAA
GCTGCAAACAATGCTACAAAGTGGCTGTTGAATATCATTCTTTCTTCCGA
TTGACAAGACCTGATGCTCCACGAAAACGTGCTGACACCTTGAAAATGGG
ATCTAGCTTCAGATACAgTGATCGAACCTTGTATCAACTGAGATACCAAA
AAGGTGATGAAGCACCTAAAAATGCTGCCAACTTCAAACGAACGCCAAGC
ACAAGGAAGACATTACCTCCTTCTTACAAAACACCGTTGATTGAACCTGA
AGTGCCATTCATTGAACCAACTAAAGTGGCACCACTTGAAGAAGAACCAG
TCCACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATGAA
GCCAATCCTGATGATGATAACTTTGATCCtgagGAATGGGAAACAGTTGA
GAAGACGATGCCTGATGGTTCGAAGAAGAAATCCCGTCGACGGGTCATCG
TTCTTAATGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTTGAAGAA
CCAGTTCAATATTATGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGA
TGATAAATTTGATCCTAAGGAATGGGAAACGGTCGAGAATACGATGCCTG
ATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTG
AAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTA
TGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATC
CTAAGGAATGGGAAACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAG
AAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGAT
TGGGAAATCTCCAGTCGAAGAACCCATTCAATATAATGAAGAAGTGGAAG
TCGATGAAGCCAATCCTGATGATGATAAATATGATCCTGAGGAATGGGAA
ACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACG
AATCATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGA
AACCGTCAGAAGTCGACGAAGAACCCATCGAATATGAAGAAGTTGAAATT
GATGAAGCCAACCCTCAAGATGATCAATTTGATCCAAAAgagTGGGAAGT
TGTGGAGAAAGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTC
GTGTCGTCATTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAA
AATGAAGTGACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACA
AGAAGATGATGACAAGTTTGACCCTGAGGTAAA
Run BLAST on NCBI

transcript from alignment at sc0000339:287903..298726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019929 ID=TCONS_00019929|Name=TCONS_00019929|organism=Clytia hemisphaerica|type=transcript|length=10824bp|location=Sequence derived from alignment at sc0000339:287903..298726+ (Clytia hemisphaerica)
TaataagaaattgaaaatttgctcaTTCGTGGTAAAAAATGGTTTCCAAT
GTAGCCCAAACGGGTGAAAATTCATCTGCTGCTGAAACAAActcaaagaa
atcaaagaaaaagtcagGTCCTCAATATGAATGCGTCATCACATGCTTGG
ATGGCTCTGTGATCAACACTTCTGTTGAGGTTTGAAGTTTTTATTTTCCc
cttgaattttgatttttgtcatCATGATCATGTATAGGCAAATGGAAAAA
AAGCTATTAAATTTATCTCCAAAGTTAGTTTCTTGATTTGATTGGGTtgg
aatatttattttttgtctaCAAGAACAGGTTGGgtttaattaaattttaa
ttCCAAATAGTGTGTTATACAGATTGTAAGTGTATATTTAATGGTAATTG
ATTCGGATTAGGCtggacggcaaaccaacaattttttaagtccagcctta
tTTTGACCTCTAAAAGGCCCTTATAAAGTGCACAAAGAATTTTATCAATG
ATAATGTGTTTCTATAACCAATacaacaaagggttttttcgattttagaa
aTCAGCCAAAGGAGAAGAACTAGTCAATAAAGTAGCTCAAGAACTTGATG
TGAAATCGAAAGATTATGTTGGTCTCCTTTTCAATAATGGAACAAGGGTA
agattttcagaatattttccTATTGTAAAAAGCTTAACATTTTcaggata
atttttttcattttaccaTGCACAGGAGTACCTTtccagaaaattatttt
gataaacttattttatttttcagcaatGGTTGGATATTCATAAAGATATG
AAACATCAGTTGGGAGGTTGGTACTTCTTCAGTtttgtttttggaatttt
ttttagtgaaaatctttaaattatGCATAACTTGCCCATTTCATTTCTCT
TTATGAATTATTTAGCAAGGAAGAGGTGTTTTCAAATgtgctttttattt
atttcagatTCTAAAGCAGAATTTTTATTTCGGGTCAAATTCTATGAGCC
TGAGCCCAGCAAAATTCAAGAAGATCATTTAAGGTTTGTTATTTGTTTTC
CCCTTTCtatacaaaaatgtttttgtttgaccCAGCTTTATATTTTTTGC
TCAAGTCTCAATATATTGACTGAATTATTTACTCAAtgcaaattcaaatt
caaaaacaaatgttttttattccttttaatgattttagtgaaacaggttt
ttaaattttggaattcttttgaaacccattaaatttttgtgttttcagAT
ATTTACTTTATCTCCAGATTAGAGAAGATTTATCAGAAAAAAGGTAAATA
ATGTTTATCTAGTTAACAAATTGTGTTGGTATAGGTTTCCATGGAGAAGT
TGGATTACAGCTTATTctaattaatgtaattaaagtATATCCTTTAATCA
TCAAAATTACTTGGCACTTAGCAGCCATATTATTGATTTTAAtgacatca
tttttttctttaagattAAAATGCACAGAAGAAGTAATTGCTCAACTTGG
TGCATATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTGTC
ATTATTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTTTA
AAAGTCTTAACTgatatttttcaacatttaaaaaattgagattcCAATAC
ATATATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAactt
atttgaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAATT
TATCAGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGGTA
AGTAAAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCACCC
TAAAGGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCGAT
ATACTTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattttc
ttcatttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGATA
ATGCAATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCATA
ATAATTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCTGA
ACTTAACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACG
TACATGATGCCATGGTAGGTATTTTAAGAACAAAATGAAGTTTAAGCAAC
CCAAACAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATTGAA
TGTTCTTTTTTTGTCTTTAGGATACCAATGGGCATGTAGAGATTGGTATT
GCTGCTTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTTT
CAGATGGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACCA
TTAAACTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGTA
ATTCTATTTTAATTTTGTAAAGCGTCACAtgtttctaaaatattcagtaa
ttttaaatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGTA
TATTATTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTGT
TGAATATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAAC
GTGCTGACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaaa
ttgttttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCAAC
TAAAGTGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTCT
AAATTAGAAGGTTGATTTaatgcatgttttttttataacaacatccaaaa
aattttaagccttcggaatcggatgttcttaactttttcatttttaagcc
taagaatgttcttaaaatcttcttaatttctacattttttgagtgttttt
gtgcaattttgaaagaaatcgagtgttttagagcccatgaagccttaaaa
tgttgttaACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTta
tcttatatagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCA
GTGATCGAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCT
AAAAATGCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACC
TCCTTCTTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAAC
CAACTAAAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATTT
CTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGT
TTTCTTTAAGATTAAAATGCACAGAAGAAGTAATTGCTCAACTTGGTGCA
TATACTGCACAAggtaaatttgttttaaaacctTTGGCAATGTGTCATTA
TTTAATGTTTGTTTTTAGTCAATTGCACCCTGTCAACCAAAGTTTAAAAG
TCTTAACTgatatttttcaacatttaaaaaattgagattcCAATACATAT
ATAAAAGTATTTACTTGGGATAGTTAAGTCATGTTTATTAAAacttattt
gaaatttcaattgatattttttcagcTGAAGTAGGAGACTTCAATTTATC
AGAGCATGAGCATGATTACTTGAAAGATTATGAGTTTGCTGAGGTAAGTA
AAGTCTATACCAACAAATAACATGATTCCTTAAGCTGAAATCACCCTAAA
GGAACTCTTTAAtgaaaaagtcattttcttACCATAGAATACCGATATAC
TTGAAAGAATCAATTTATTGCACAAACAACACAGGtattcattttcttca
tttttgattcAGTTCCAACCTTCTCTTGTACTTTTTTCACTGGATAATGC
AATGGATAGATGGATTTTACTTAAACTTCGCATAAATGTCTTCATAATAA
TTACTCTTACTTTTTTATTTAGGGGTCAAACACCTTTACAAGCTGAACTT
AACTTTTTGGAAATTGCCAAAAAGATTCCTAGATATGGAGTGGACGTACA
TGATGCCATGGTAGGTATTTTAAGAACAAATGAAGTTTAAGCAACCCAAA
CAACCTTTTAATGTCTTAAATGTAAGCTTATGTTCAAATATtaaatgttc
tttttttgtCTTTAGGATACCAATGGGCATGTAGAGATTGGTATTGCTGC
TTTAGGAATAAACATCTATCGGGATGGAAAGCGTGAACAGCTTTTCAGAT
GGCAAAATATGCATGACTTCAATTACAACCGAAGAAAATTCACCATTAAA
CTCAAACAACCAGTGGTACGTATGCTTTTCCTTTAGCTGAAAGTAATTCT
ATTTTAATTTTGTAAAGCGTCACATGTTTCTAAAACATTCagtaatttta
aatgttttatttcaGAGCGACAATGACAATAAGAAGAATTACGTATATTA
TTTCGAATCTGCTAAAAGCTGCAAACAATGCTACAAAGTGGCTGTTGAAT
ATCATTCTTTCTTCCGATTGACAAGACCTGATGCTCCACGAAAACGTGCT
GACACCTTGAAAATGGGATCTAGCTTCAGATACAggtataaaaaattgtt
ttcacaaaatatttatttcaccACTAACTCCACTTCTATCTCAACTAAAG
TGAAAACATTGTCACTAAATCACTCAACTCAATTTTTATGTTTCTAAATT
AGAAGGTTGATTTaatgcatgttttttttataacaacatccaaaaatttt
aagcTTTCGGAATCGgatcttcttaactttttcagttttaagcctaagaa
tgttcttaaaatcttcttaatttctacattttttgagtgtttttgtgcaa
ttttgaaagaaatcgagtgttttagagcccatgaagccttaaaatgttgt
taACTTGTTCTTACTTAACACTTTGGTCATCGAATATGTTCTtatcttat
atagtttgttcttattaaaaaagcgtgtatgttcTTTCTTTTCAGTGATC
GAACCTTGTATCAACTGAGATACCAAAAAGGTGATGAAGCACCTAAAAAT
GCTGCCAACTTCAAACGAACGCCAAGCACAAGGAAGACATTACCTCCTTC
TTACAAAACACCGTTGATTGAACCTGAAGTGCCATTCATTGAACCAACTA
AAGGTAGTTTATTCTTCTTTGGAAATGTAAATTAATGCTTATttctggtt
tttacacaaaaaattGTGGTTGGAATATATGTCTGGAGACTGAAGActaa
attttcaaatctttttccttTAGTGGCACCACTTGAAGAAGAACCAGTCC
ACTATGAAGAAGTACCAGTCCAATACGAAGAAGTAGAGTTCGATGAAGCC
AATCCTGATGATGATAACTTTGATCCtgaggtattttttattttggggAG
CCTTTCGATGCTATTCTACAGTTTACTACAGTTGAATTAGTTCAGTTTTT
TTtgctggaaatttttttatcttttcgtTTTATGAGAAACTTGGATTCAT
AAGAAACTTGAAGAACTTTTTATTAAATCTTCAAAGTCATTGAAAACTTT
ATCACTTTCCTCTAGGAATGGGAAACAGTTGAGAAGACGATGCCTGATGG
TTCGAAGAAGAAATCCCGTCGACGGGTCATCGTTCTTAATGTTGTGAAGA
AACCAAAGAGTGGGAAATCTCCAGTTGAAGAACCAGTTCAATATTATGAA
GAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAA
GGTATATTGTTAGCACAGAATTTCCTTTTCCGAAATCTTCAGTGTGACCT
GAAGATCTGGAAAACGAtaagattttgctgaaattttgcctACTCTGACa
tgtcttttttttcctttNCGGATTTGGCTTATATTTTGCGCACTCTGACA
TGTCTCTATtcctttttttgcttgagacgAGCTTTGTACGATAGCTTCGC
GTTCTTATCAATTTATAATATACTAAATTTAAGCCCATTCGACTATGAAA
TAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGCATTTTGAACTCAA
TCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGAAACGGTCGAGAAT
ACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCT
TAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTAGTCGAAGAACCAG
TTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAATCCTGATGATGAT
AAATTTGATCCTAAGGTATCGTTAGCAcagaatttcttttttctaaaaac
atcGGGGTGACCTGGAGATTGGGGGAACGATCGGATTTGGCTTATATTTT
GCGCACTCTGACATGTCTCTATtcctttttttgcttgagacgAGCTTTGT
ACGATAGCTTCGCGTTCTTATCAATTTATAATATACTAAATTTAAGCCCA
TTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCATCTGCTTTCACTGC
ATTTTGAACTCAATCAACTTCACTTACTTTCGTCTTCTTCAGGAATGGGA
AACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGAC
GTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGAGTGGGAAATCTCTA
GTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAAGTTGATGAAGCCAA
TCCTGATGATGATAAATTTGATCCTAAGGTATCGTTAGCAcagaatttct
tttttctaaaaacatcGGGGTGACCTGGAGATTCGGAGAACGATCGCATT
TGGCTGAAGTTTTGCGCACTCTGACATgtctctatttctttttttgcttg
agacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTTATtgagaaaatatt
gaatttaagCCCATTCGACTATGAAATAAGTTGTCAATGTCTTTCACTGC
AATATGAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGA
AACGGTCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGAC
GTAATATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCA
GTCGAAGAACCAGTTCAATATAATGAAGAAGTAGAGTTCGATGAAGCCAA
TCCTGATGATGATAAATATGATCCTGAGGTATTTTTTATTTGGGGAAAGC
ctttcaatgcaattttacaGGTGACGAGTTCAGTATTTTTTGCTGGAATT
TTTTACGTCTTTTcgttttataagaaatttttcaaaatcattttaaactT
TCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATG
GTTCAAAGAAGAAATTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAG
AAACAAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGA
ACAAGTGGAAGTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTA
AGGTATCGTTAGCAcagaatttcttttttctaaaaacatcGGGGTGACCT
GGAGATTCGGAGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACA
TgtctctatttctttttttgcttgagacgAGCTNGGGGGAACGATCGGAT
TTGGCTTATATTTTGCGCACTCTGACATGTCTCTATtcctttttttgctt
gagacgAGCTTTGTACGATAGCTTCGCGTTCTTATCAATTTATAATATAC
TAAATTTAAGCCCATTCGACTATGAAATAAAAAGTTGCCAATGTCTTTCA
TCTGCTTTCACTGCATTTTGAACTCAATCAACTTCACTTACTTTCGTCTT
CTTCAGGAATGGGAAACAGTCGAGAATACGATGCCTGATGGTTCGAAGAA
GAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTGAAGAAACCCAAGA
GTGGGAAATCTCTAGTCGAAGAACCAGTTCAATATTATGAAGAAGTGGAA
GTTGATGAAGCCAATCCTGATGATGATAAATTTGATCCTAAGGTATCGTT
AGCAcagaatttcttttttctaaaaacatcGGGGTGACCTGGAGATTCGG
AGAACGATCGCATTTGGCTGAAGTTTTGCGCACTCTGACATgtctctatt
tctttttttgcttgagacgAGCTTTGTACGATAGCTTCGCGTTCTTAGTT
ATtgagaaaatattgaatttaagCCCATTCGACTATGAAATAAAAAGTTG
CCAATGTCTTTCACCTGCTTTCACTGCAATATGAAGTCACTCAACTTCac
ttactttcgttttcttcagGAATGGGAAACGGTCGAGAATACGATGCCTG
ATGGTTCGAAGAAGAAATTCCGTAGACGTAATATCGTTCTTAATGTTGTG
AAGAAACCAAAGATTGGGAAATCTCCAGTCGAAGAACCCATTCAATATAA
TGAAGAAGTGGAAGTCGATGAAGCCAATCCTGATGATGATAAATATGATC
CTGAGGTATGTTTTTTTTGGGGAAAcctttcactgaaatttcaggCAATT
TTACAGTTTGCAGGTGACGAGTTCAGTATTTTTGCTGGAATTTTTTACGT
ctctttgttttataagaaacttttcaaaatcattttaaactTTCTCATTT
TCCTCTAGGAATGGGAAACAGTCGAGAAGAAGATGCCTGATGGTTCAAAG
AAAAAGTTCCGCCGACGAACCATTGTTCTTAATGTTGTGAAGAAACCAAA
GAGTGGGAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGG
AAGTTGATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAG
TTAGCACAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCAT
CTCCGAGTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCA
AAtttacattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAG
AAGACGATGCCTGATGGTTCGAANGTTGTCAATGTCTTTCACTGCAATAT
GAAGTCACTCAACTTCacttactttcgttttcttcagGAATGGGAAACGG
TCGAGAATACGATGCCTGATGGTTCGAAGAAGAAATTCCGTAGACGTAAT
ATCGTTCTTAATGTTGTGAAGAAACCAAAGATTGGGAAATCTCCAGTCGA
AGAACCCATTCAATATAATGAAGAAGTGGAAGTCGATGAAGCCAATCCTG
ATGATGATAAATATGATCCTGAGGTATGTTTTTTTTGGGGAAAcctttca
ctgaaatttcaggCAATTTTACAGTTTGCAGGTGACGAGTTCAGTATTTT
TGCTGGAATTTTTTACgtctttttgttttataagaaacttttcaaaatca
ttttaaactTTCTCATTTTCCTCTAGGAATGGGAAACAGTCGAGAAGAAG
ATGCCTGATGGTTCAAAGAAGAAATTCCGCCGACGAACCATTGTTCTTAA
TGTTGTGAAGAAACCAAAGAGTGGGAAATCTCCAGTCGAGGAAGAACCAG
TTCAATATGAAGAAGTGGAAGTTGATGAGGCAAATCCTGATGATGATAAA
TTTGATCCTAAGGTATTGTTTGCACAGAAtttctttctctctctctcacT
TTAAAGCCAATATTGTGCATCTCCGAGTCATTTGATGTTTTTCAGGTCTC
AAACGAGCCAGATCTACTcaaatttacaatatttttcaaatatctcCTCT
AGGAATGGGAAACAGTCGAGAAGACGATGCCTGATGGTTCGAAGAAGAAA
TTCCGCCGACGAATTATTGTTCTTAATGTTGTGAAGAAACCAAAGAGTGG
GAAATCTCCAGTCGAGGAAGAACCAGTTCAATATGAAGAAGTGGAAGTTG
ATGAAGCAAATCCTGATGATGATAAATATGATCCTAAGGTATAGTTAGCA
CAGAATTTCTTTCTCTCTCTCACTTTAAAGCCAATATTGTGCATCTCCGA
GTCATTTGATGTTTTTCAGGTCTCAAACGAGCCAGGTCTACTCAAAttta
cattatttttcaaatatctcCTCTAGGAATGGGAAACAGTCGAGAAGACG
ATGCCTGATGGTTCGAAGAAGAAATTCCGCCGACGAATCATTGTTCTTAA
TGTTGTGAAGAAACCAAAGAGTGGAGATGAGGAGAAACCGTCAGAAGTCG
ACGAAGAACCCATCGAATATGAAGAAGTTGAAATTGATGAAGCCAACCCT
CAAGATGATCAATTTGATCCAAAAGTAAATAATTGATGTGACTTTCTTCA
GTTTCTCTTACTTCATTACCTATGCCACATTTTGACATCTTgttttttac
aatttcttaacTTAACTTGATACATCACATTTTAGGCTTCCCAggcagtc
acaacttaaccatcttttaattttttttaggagTGGGAAGTTGTGGAGAA
AGAAAAACCGAATGGCGACAAAGTACGCGTCAGACGGCGTCGTGTCGTCA
TTTTGAAGATCGTGAAGGAGCCTGAAGATCTGGTGAATGAAAATGAAGTG
ACTGTCGAAGAAATGCCACTCAATGAAAATGCTCCAACACAAGAAGATGA
TGACAAGTTTGACCCTGAGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011193XLOC_011193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019929-exon-sc0000339-1491911889:287903..288081TCONS_00019929-exon-sc0000339-1491911889:287903..288081Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:287903..288081TCONS_00019929-exon-sc0000339-1510915933:287903..288081Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:287903..288081TCONS_00019929-exon-sc0000339-1575043694:287903..288081Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:288451..288549TCONS_00019929-exon-sc0000339-1491911889:288451..288549Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:288451..288549TCONS_00019929-exon-sc0000339-1510915933:288451..288549Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:288451..288549TCONS_00019929-exon-sc0000339-1575043694:288451..288549Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:288676..288718TCONS_00019929-exon-sc0000339-1491911889:288676..288718Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:288676..288718TCONS_00019929-exon-sc0000339-1510915933:288676..288718Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:288676..288718TCONS_00019929-exon-sc0000339-1575043694:288676..288718Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:288860..288935TCONS_00019929-exon-sc0000339-1491911889:288860..288935Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:288860..288935TCONS_00019929-exon-sc0000339-1510915933:288860..288935Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:288860..288935TCONS_00019929-exon-sc0000339-1575043694:288860..288935Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:289151..289195TCONS_00019929-exon-sc0000339-1491911889:289151..289195Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:289151..289195TCONS_00019929-exon-sc0000339-1510915933:289151..289195Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:289151..289195TCONS_00019929-exon-sc0000339-1575043694:289151..289195Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:289367..289419TCONS_00019929-exon-sc0000339-1491911889:289367..289419Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:289367..289419TCONS_00019929-exon-sc0000339-1510915933:289367..289419Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:289367..289419TCONS_00019929-exon-sc0000339-1575043694:289367..289419Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:289632..289699TCONS_00019929-exon-sc0000339-1491911889:289632..289699Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:289632..289699TCONS_00019929-exon-sc0000339-1510915933:289632..289699Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:289632..289699TCONS_00019929-exon-sc0000339-1575043694:289632..289699Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:289794..289840TCONS_00019929-exon-sc0000339-1491911889:289794..289840Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:289794..289840TCONS_00019929-exon-sc0000339-1510915933:289794..289840Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:289794..289840TCONS_00019929-exon-sc0000339-1575043694:289794..289840Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:289979..290066TCONS_00019929-exon-sc0000339-1491911889:289979..290066Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:289979..290066TCONS_00019929-exon-sc0000339-1510915933:289979..290066Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:289979..290066TCONS_00019929-exon-sc0000339-1575043694:289979..290066Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:292268..292417TCONS_00019929-exon-sc0000339-1491911889:292268..292417Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:292268..292417TCONS_00019929-exon-sc0000339-1510915933:292268..292417Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:292268..292417TCONS_00019929-exon-sc0000339-1575043694:292268..292417Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:292518..292687TCONS_00019929-exon-sc0000339-1491911889:292518..292687Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:292518..292687TCONS_00019929-exon-sc0000339-1510915933:292518..292687Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:292518..292687TCONS_00019929-exon-sc0000339-1575043694:292518..292687Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:293098..293255TCONS_00019929-exon-sc0000339-1491911889:293098..293255Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:293098..293255TCONS_00019929-exon-sc0000339-1510915933:293098..293255Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:293098..293255TCONS_00019929-exon-sc0000339-1575043694:293098..293255Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:293376..293482TCONS_00019929-exon-sc0000339-1491911889:293376..293482Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:293376..293482TCONS_00019929-exon-sc0000339-1510915933:293376..293482Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:293376..293482TCONS_00019929-exon-sc0000339-1575043694:293376..293482Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:293668..293853TCONS_00019929-exon-sc0000339-1491911889:293668..293853Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:293668..293853TCONS_00019929-exon-sc0000339-1510915933:293668..293853Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:293668..293853TCONS_00019929-exon-sc0000339-1575043694:293668..293853Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:294182..294367TCONS_00019929-exon-sc0000339-1491911889:294182..294367Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:294182..294367TCONS_00019929-exon-sc0000339-1510915933:294182..294367Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:294182..294367TCONS_00019929-exon-sc0000339-1575043694:294182..294367Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:297190..297375TCONS_00019929-exon-sc0000339-1491911889:297190..297375Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:297190..297375TCONS_00019929-exon-sc0000339-1510915933:297190..297375Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:297190..297375TCONS_00019929-exon-sc0000339-1575043694:297190..297375Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:298179..298376TCONS_00019929-exon-sc0000339-1491911889:298179..298376Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:298179..298376TCONS_00019929-exon-sc0000339-1510915933:298179..298376Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:298179..298376TCONS_00019929-exon-sc0000339-1575043694:298179..298376Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1491911889:298533..298726TCONS_00019929-exon-sc0000339-1491911889:298533..298726Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1510915933:298533..298726TCONS_00019929-exon-sc0000339-1510915933:298533..298726Clytia hemisphaericaexon
TCONS_00019929-exon-sc0000339-1575043694:298533..298726TCONS_00019929-exon-sc0000339-1575043694:298533..298726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000339supercontigsc0000339:287903..298726 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00019929 vs. Swiss-Prot (Human)
Match: E41L2 (Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.438e-68
Identity = 141/351 (40.17%), Postives = 207/351 (58.97%), Query Frame = 3 
Query:   69 NSSAAETNSKKSKKKSGPQYECVITCLDGSVINTSVEKSAKGEELVNKVAQELDVKSKDYVGLLFNNGTRQ--WLDIHKDMKHQLGDSKAEFLFRVKFYEPEPSKIQEDHLRYLLYLQIREDLSEKRLKCTEEVIAQLGAYTAQAEVGDFNLSEHEHDYLKDYEFA--ENTDILERINLLHKQHRGQTPLQAELNFLEIAKKIPRYGVDVHDAMDTNG-HVEIGIAALGINIYRDGKREQLFRWQNMHDFNYNRRKFTIKLKQPVSDNDNKKNYVYYFESAKSCKQCYKVAVEYHSFFRLTRPDAPRKRADTLKMGSSFRYSDRTLYQLRYQKGDEAPKNAANFKRTPSTR 1106
            N   AE  S+K  KK+    +C +T LDG+  +  +EK AKG+ L +KV + L++  KDY GLLF     Q  WLD  K++K QL +    F F VKFY P+PS++ ED  RY L LQ+R+D++  RL C+    A LG+YT QAE+GD++  EH    L +++FA  +  ++ E++  LHK HRG +P QA+  FLE AK++  YGVD+H A D+ G  +++G+ A G+ IY+D  R   F W  +   +Y R  F IK++ P      +    +   + ++ K+ +KV VE+H+F+RL  P+ P K A  L +GS FRYS RT  Q R Q      + A +F+RT S R
Sbjct:  200 NELKAEKASQKVTKKTK-TVQCKVTLLDGTEYSCDLEKHAKGQVLFDKVCEHLNLLEKDYFGLLFQESPEQKNWLDPAKEIKRQLRNLPWLFTFNVKFYPPDPSQLTEDITRYFLCLQLRQDIASGRLPCSFVTHALLGSYTLQAELGDYDPEEHGSIDLSEFQFAPTQTKELEEKVAELHKTHRGLSPAQADSQFLENAKRLSMYGVDLHHAKDSEGVDIKLGVCANGLLIYKDRLRINRFAWPKILKISYKRSNFYIKVR-PAELEQFESTIGFKLPNHRAAKRLWKVCVEHHTFYRLVSPEQPPK-AKFLTLGSKFRYSGRTQAQTR-QASTLIDRPAPHFERTSSKR 546
The following BLAST results are available for this feature:
BLAST of TCONS_00019929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
E41L25.438e-6840.17Band 4.1-like protein 2 OS=Homo sapiens GN=EPB41L2... [more]
back to top