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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019840 ID=TCONS_00019840|Name=TCONS_00019840|organism=Clytia hemisphaerica|type=transcript|length=3049bpRun BLAST on NCBI protein sequence of TCONS_00019840-protein >TCONS_00019840-protein ID=TCONS_00019840-protein|Name=TCONS_00019840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp MGVLTEGELTPLTFEEIQQYKEFLKTHGIQQFCRHYNKIKDKNYETLKWGRun BLAST on NCBI transcript from alignment at sc0000338:209500..229681- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019840 ID=TCONS_00019840|Name=TCONS_00019840|organism=Clytia hemisphaerica|type=transcript|length=20182bp|location=Sequence derived from alignment at sc0000338:209500..229681- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000338:209500..229681- >TCONS_00019840 ID=TCONS_00019840|Name=TCONS_00019840|organism=Clytia hemisphaerica|type=CDS|length=29250bp|location=Sequence derived from alignment at sc0000338:209500..229681- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019840 vs. Swiss-Prot (Human)
Match: GSH1 (Glutamate--cysteine ligase catalytic subunit OS=Homo sapiens GN=GCLC PE=1 SV=2) HSP 1 Score: 553.518 bits (1425), Expect = 0.000e+0 Identity = 292/629 (46.42%), Postives = 414/629 (65.82%), Query Frame = 2
Query: 56 MGVLTEGELTPLTFEEIQQYKEFLKTHGIQQFCRHYNKIKDKNYETLKWGDEIEMMMIRLDDEKKTAPLNCKAVEILGPLME-AERQNPGDTDTAWRPEFTEFMIESSPGRPYGGNIDHFNTVEANMKIRRDELMSYFTDDKEQILSLSTYPRIGCQNVFHPPVKCKMENNTATRSYSVPDSVINKSHLRHRNLATQMTKRKGRKIFHNAPIFRDTNTPNPFIDPDVPKDSPEDMEVMKPNHVHXXXXXXXXXXXXXXXXFQACNVEEARTLYDQQTVLAPIVMALSASSPCIKGYLLETDTRWENIAGLCDERTPDELGLEPLKDKTRRRLYKSRYGSVDMYLSEENDKYNDIDVIYRDEHLQILLDEGIDNQLARHIAHLFTRDPLAVYKEML---SDEEMDHFELFNSTNYQSVRFKPPPPATNIGWRVEMRPIESQLTDFENAAFVSFVVLLTRVCLSYELNLAIPMSKVEKNMERASKRNALQEEKFFFRINL-------------GPEETEAECKE---MTMNEIINGKDDDFPGLLDIIQFYLDHLDIDADTKCTISQYLKLISARASGELLTTASWMRKFIRSHPKYKFDSVVSEEINYDLMKMCTEITNGKVHCPDLFTA 1882
MG+L++G +PL++EE +++ + ++ HGI QF Y+ +KD++ + LKWGDE+E M++ D E K L ++L L E ER NP + T WRPE+ +MIE +PG+PYGG + FNTVEANM+ RR E S ++ + + +++++PR+GC P VK A++S PD INK H R L + R+G K+ N PIF+D NTP+PFI+ D E KP+H+++D + G+G CLQ TFQAC++ EAR LYDQ + PIVMALSA+SP +GY+ + D RW I+ D+RT +E GLEPLK+ R + KSRY S+D YLS+ +KYNDID+ E + LL EGID+ LA+H+AHLF RDPL +++E + E DHFE STN+Q++RFKPPPP ++IGWRVE RP+E QLTDFEN+A+V FVVLLTRV LSY+L+ IP+SKV++NM+ A KR+A+ + F+FR ++ TE +E M+++ IINGK+ FPGL+ I+ YL+++++D DT+C+I YLKLI RASGEL+T A WMR+FI +HP YK DSV+++E+NY L+ C +I N CP+L +
Sbjct: 1 MGLLSQG--SPLSWEETKRHADHVRRHGILQFLHIYHAVKDRHKDVLKWGDEVEYMLVSFDHENKKVRLVLSGEKVLETLQEKGERTNP-NHPTLWRPEYGSYMIEGTPGQPYGGTMSEFNTVEANMRKRRKEATSIL-EENQALCTITSFPRLGCPGFTLPEVKPNPVEGGASKSLFFPDEAINK-HPRFSTLTRNIRHRRGEKVVINVPIFKDKNTPSPFIETFTEDD--EASRASKPDHIYMDAMGFGMGNCCLQVTFQACSISEARYLYDQLATICPIVMALSAASPFYRGYVSDIDCRWGVISASVDDRTREERGLEPLKNNNYR-ISKSRYDSIDSYLSKCGEKYNDIDLTIDKEIYEQLLQEGIDHLLAQHVAHLFIRDPLTLFEEKIHLDDANESDHFENIQSTNWQTMRFKPPPPNSDIGWRVEFRPMEVQLTDFENSAYVVFVVLLTRVILSYKLDFLIPLSKVDENMKVAQKRDAVLQGMFYFRKDICKGGNAVVDGCGKAQNSTELAAEEYTLMSIDTIINGKEGVFPGLIPILNSYLENMEVDVDTRCSILNYLKLIKKRASGELMTVARWMREFIANHPDYKQDSVITDEMNYSLILKCNQIANELCECPELLGS 621 The following BLAST results are available for this feature:
BLAST of TCONS_00019840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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