TCONS_00019795 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019795
Unique NameTCONS_00019795
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019795 ID=TCONS_00019795|Name=TCONS_00019795|organism=Clytia hemisphaerica|type=transcript|length=2410bp
aacaaacgacaaattttaataaatcgtcactatttttgttctgaatgatt
gttttaacGGTCACGCTcgcgtagatatcaattatatgtgttaaattcat
aaccaggtaggtccataaaattATCGCTTGTTATAATTGCCACTAAATGA
GATGTTGATGAGATGTTGATGGAATTTAGTATTTTTGATAACTCGTTAAT
TCTTATCctattaattttcaaaatatattcacTTTTCAACAACCTTTTTA
GATAGCTTGACTATActcattttttaaagtttgggCCAATCTCCCATTAA
CGAAACGGGGGACAATTCTATTTTAATGGTTTTTCAGAAGTTTCTTTGAT
TATTTAAATACTTGACGAACTACTATTTTATGTTTAGTGCTTCTCTGCAC
ACGAGGTATTCAAAGCGGTCAACAAATCGCACTCTGCATTGCTCAATGAG
GAGCAGTTTGAGCAAGCGTCAGCCTTCATTGTATCTCAACTGGTCGAAAA
ACATTGCATCGAAGAAGAACATCACGATGACGATCACGACGACCACGATC
ACGACCACGATCACGATCACGATCACGAAGAAGACTTACCGAAACCAGAA
TACTTCATTGAAGAGATTTTCGAAGCGTATGGTGAAGAAAACAAGACGGG
TATTTCGCCGGAAAAGTTCAAAGATTTCTACAAGAAAGTGAAACTAGGTA
ATCAAACAGCGGAAGACGATCACGTCGATCACGACGATCACGACGAACAT
GAAGGACATGATCACAAACGAAGACGAAGAGCTAATGATGATGAACATGC
TAAATACAAAAAGTGCTATTCAGCTGAACAGATTTTGGAGATTTATGGCT
TAACAAAAGGGTCGATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCC
TCACTCATCCAACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAAC
TACCAAAACACCAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGA
GACCATGGATTGGCATGATCGTTTCCATCACCATAATCTCTCTTGCATCA
CTGGCCGGTGCTTGCACCACACCTGTCACCCACAAAAGGTGGTTTGAACT
TCTTTTGGTCACCATGATAGCGCTGGCTGTTGCAGTGATGATCGGTGATG
CAGTTCTCCATCTATTCCCCCACGCGCTAAACTTGCACGGTCACGATGAT
GGGCACGACCACGCTCACGAAGATGGCAACCCTCTTCTCAAAGAAGACTC
GTATATCTGGAAGTCGTTGTTATTGCTGTTAGGTGTTTACATCTTCATGC
AGTTCGAGTTGGTGATGAATGCACTAGGAGCTGGTCATTCTCATGGACAG
GTTGCCGACCATGTCATTTCTAATGACAATGCAAACGGTTCCCTCCCTAT
GAAGGATGAGAAGAAACCGACCACGTTTGAGTACGCGGATAGCACACCGA
AGAAAGGGTTGCGAATGAAAGATTTTCAAACCGTTGTGTGGATGATCATC
ATTGGCGATGCTCTCCACAACTTTCTGGATGGTGTTGCCATAGGAACCGC
CTTCACCGACACGGATAAATCATACCTTGGCGGAATCAGCACCTCAATCG
CTATCTTTGCACACGAACTCCCTCACGAGCTTGGAGATTTTGCAGTTCTC
ATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTTTCTATC
TTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGGGGCTCG
AATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTTTTCATC
TATATTGCTCTGGTTAATATGTTGCCGGAGATTTTACACAGCAACGTTCT
GAAGACTCGCAAGGTGTTAACCATCGCATTAGTGAATGTTGGTCTATGGA
TTGGTTTTGCTATAATGTTCATTCTCGGTGTGTACGAAGATGACATCAAG
AGTTCACTTTAAGCGTGTAAATtcaagagagagagagagggtCTTGTCCG
AGAAGCTGATGAGCTTTTTGAAAAGCCACCACACCCACACCCACAAACAT
CAGTGATATGGTGTTAATGTTTGAATGAGCTTGTTAGAGCGTCTGTTTCT
CTTGCACGCAGAAGAGCACTACTGCAAGAAATGATCCACAAAACAGTTGG
TATCTTTTCGGACATTGTTATCACTATAACAGCTATGCAACTCCATACTC
GATAACACTCGAAGGTTTTAAACTAAGTAtacgttttatttataagagaa
CAATTTCTTTAGAACACACGACTCGACAATAGTTTAATTGTTTTAGAACA
ATATTGTTTCTATTTAGAAATGTACGAATCGAAAGCTCAGCCTTCATTTA
CTGGTTGTTATATATAAAGGTTGTTTGGGAATATTTACAActcaaacatt
taaaaaaatt
Run BLAST on NCBI

protein sequence of TCONS_00019795-protein

>TCONS_00019795-protein ID=TCONS_00019795-protein|Name=TCONS_00019795-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MINQTKFSEICPSLIQQLDSGVCASSEQTTKTPTTEHHDDEEPKWRPWIG
MIVSITIISLASLAGACTTPVTHKRWFELLLVTMIALAVAVMIGDAVLHL
FPHALNLHGHDDGHDHAHEDGNPLLKEDSYIWKSLLLLLGVYIFMQFELV
MNALGAGHSHGQVADHVISNDNANGSLPMKDEKKPTTFEYADSTPKKGLR
MKDFQTVVWMIIIGDALHNFLDGVAIGTAFTDTDKSYLGGISTSIAIFAH
ELPHELGDFAVLISSGLSIKQALMMNFLSSLTAFVGGFVGVAMGLEWKAS
PWIFAIVAGLFIYIALVNMLPEILHSNVLKTRKVLTIALVNVGLWIGFAI
MFILGVYEDDIKSSL
Run BLAST on NCBI

transcript from alignment at sc0000336:23460..33249-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019795 ID=TCONS_00019795|Name=TCONS_00019795|organism=Clytia hemisphaerica|type=transcript|length=9790bp|location=Sequence derived from alignment at sc0000336:23460..33249- (Clytia hemisphaerica)
AACAAACGACAAATTTTAATAAATCGTCACTATTTTTGTTCTGAATGATT
GTTTTAACGGTCACGCTCGCGTAGATATCAATTATATGTGTTAAATTCAT
AACCAGGTAGGTCCATAAAATTATCGCTTGTTATAATTGCCACTAAATGA
GATGTTGATGAGATGTTGATGGAATTTAGTATTTTTGATAACTCGTTAAT
TCTTATCCTATTAATTTTCAAAATATATTCACTTTTCAACAACCTTTTTA
GATAGCTTGACTATACTCATTTTTTAAAGTTTGGGCCAATCTCCCATTAA
CGAAACGGGGGACAATTCTATTTTAATGGTTTTTCAGAAGTTTCTTTGAT
TATTTAAATACTTGACGAACTACTATTTTATGTTTAGTGCTTCTCTGCAC
ACGAGGTATTCAAAGCGGTCAACAAATCGCACTCTGCATTGCTCAATGAG
GAGCAGTTTGAGCAAGCGTCAGCCTTCATTGTATCTCAACTGGTCGAAAA
ACATTGCATCGAAGAAGAACATCACGATGACGATCACGACGACCACGATC
ACGACCACGATCACGATCACGATCACGAAGAAGACTTACCGAAACCAGAA
TACTTCATTGAAGAGATTTTCGAAGCGTATGGTGAAGAAAACAAGACGGG
TATTTCGCCGGAAAAGTTCAAAGATTTCTACAAGAAAGTGAAACTAGGTA
ATCAAACAGCGGAAGACGATCACGTCGATCACGACGATCACGACGAACAT
GAAGGACATGATCACAAACGAAGACGAAGAGCTAATGATGATGAACATGC
TAAATACAAAAAGGTTTGTGTTTTTTAGAATATTTATTGTAAAGTGCATA
GAATTCTTCAATAAACACGGCAGGAAAGCCTTACTTCATTCCTTTTTTAA
CATTTCAGTGCTATTCAGCTGAACAGATTTTGGAGATTTATGGCTTAACA
AAAGGGTCGATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACT
CATCCAACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCA
AAACACCAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACGT
AAGTTTTCCTAGCAACACAACACACACATCTTCAATGCTTGATTAGTTTG
TAAATGTGTTTGCCATGTTTTTTATTTGTTGTAAATTTACTCCCTTTGTC
TGATAATATTCAAAAGTTGACTAAGCTCTTCACATGACATTAGGTTAGTA
AATAATATATTGCTTTGACAAAGACCTCTTCTTTCGTTAAGCGACTGGCA
CAGTTCCGGTGCGCAAGTTTTTGGGTTTAACCTCCATGCTTGGTCATGAA
AAAGACTCCCAAAATGGTATTTGGTACTTTTCTGCTTAATGATTAGCATC
GAGGGAGATCGAGTGGATCGACCTCGACTGCTATCTCAAAACTTACTGAC
TACTTACTTTCTTTCGCACAGCATGGATTGGCATGATCGTTTCCATCACC
ATAATCTCTCTTGCATCACTGGCCGGTGCTTGCACCACACCTGTCACCCA
CAAAAGGTGGTTTGAACTTCTTTTGGTCACCATGATAGCGCTGGCTGTTG
CAGTGATGATCGGTGATGCAGTTCTCCATCTATTCCCCCACGTAAGTTAT
TCTTCTCGCTCTTTATTCACGTTCAGGTAGATTTTCGAGTTCATACTGAG
TTGACTATAAGCATAGTTGGTGAAATCTTAGTGGCTCAATTCAGTGTTAA
AAGTTAGACGAGACTTCGGTGAAAGAAAAATATTTGGGCTAAAGAAAGCC
TTTAGACTTGGCAAACCTTTATCAGATTACCAGATTTTTTCGATCAATGT
TTTCTTCAAAGTAATCTCTATGGCTTGAACTTTCCTTTAAAATTCCCCAG
CGACTTTTTCTCTAAAAGTCTGAACTTTCAATTTTCTTGTTCCATTTTCT
TTCTCAAGAAAATATATTTTCAAACATTTTCAAAGCAAAATTTATCGGAT
AACGAAATGGAACATAAACTTGTTTTCTGACGGCTAATTTTTTAGATTCT
CATGTACTGTAATAGATAGCTCTTAATCAGGGGGGGGGTACTAGGTTTGC
GAGGTGACATGTCCGAGCTAAAAATCGAAAATCGACCCTTAGAGAGAGGA
AATTTCGATTTTCGTGAATTTTAAACCCTTAGCCTTACGGAGACTAAATT
TGACTTTTAAAGGTTTTTGTGTACCCATTTGAGAGACTTTCGAGGGTGTG
AAAAAGGACCCTTATGGCCTCGCACATATTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTAAATTTTTTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAATATTG
TAGTTAATTCGATGAGGCGTTTGGGTTGAGGAATGTGATACATCGCTAAT
AGAATTAATGCTAAATATTAAAAAAAACAAAAAGACAAAAACAAAAAAAA
ACACAAAAAAAAACAACATATATTAAGCATAAATGTAAATAAATTTTAAA
CTAATTTAAAGCTCAATGTGTCAAAACCTAATGTAAGCTTCAATGAAAAG
GAAAGGATGGAGTTAGGTTAGGATCCTGAAGTAGTAAAACATTAGAATTC
GCAATATTGTCAAGAATATAGTTATTAAGATACTTAGGTAACTTCGAATA
GGTGATTATTGAAAAATTTCAAGGATTCAATGATTTAGCTAATGCCCTAT
CAAAATAAAATTTCCAAGCTAGATTTGCAAAGCTATCTTTTGATTCGATA
TGCTTTATGTTAATAGGTAAATCATTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGTATTTGTGTCGAGGTTCGTATCGAGGTTTATTGATTTTTAATATACAA
AATGGAGAGTCATGATCGGATATTTCGTCACAGAAGACAACGTCGCTCGC
GATCAATTTCGTATCAGTGTTGGTAATGACGTGGTCAATGAGAGTTCTCG
ATACGTGCAGCGCCCATTTTGCCTAAGTACCCCCCAGGCTCTAAATCTTT
AATACTGCTAGTTAAAATGTTCAGAGCAAACTCTACTAGAAAGTCTTATT
TCATCGGGTGAGCTTAGAATTTCTTCTGATATATTTTATTTCAAAAATCA
AAAGACTTTAACGACCAATTACTAACAAAATCAACTCCTGTTTCTTTATA
CCTCTCACGCTTTTTTATCCTTCTCTTGTCTTTTTGCAGGCGCTAAACTT
GCACGGTCACGATGATGGGCACGACCACGCTCACGAAGATGGCAACCCTC
TTCTCAAAGAAGACTCGTATATCTGGAAGTCGTTGTTATTGCTGTTAGGT
GTTTACATCTTCATGCAGTTCGAGTTGGTGATGAATGCACTAGGAGCTGG
TCATTCTCATGGACAGGTAACAAACTTGACACACACCAACTTACTTGAGT
GAGAGTGGATAAATTATTAAGAACTGATTTTAATAGCTCTTTTGACTGAT
CCATTTTGAATATCATTTGCTCAAGGATATTTGTATACCATTGGCAATAA
TCTTAAGCATTTTGATTGACTTCCGTATATTATGAAAAGTTTCTCTTGAA
AAGATATGTTTCCAGATTTAAGAAAGATCTTTACGCTCTTAGTAATATAA
GATGCAGTTCAAAGGGCTCTCGTTTTATGTTTTTTTTATGAATTATTGAA
TTCGCCCGAGTTTCTAACTTCTTAAGAATGAAATCGAAAAAAGGTATATT
GCGAGTGGAATCTTTTATGCAGAATACACCTATCAACCCTTAGCCAGTCG
AAACCACGACAGAGAAATGGCAACTATTGCCGAATGGGAAGGTGAAAAAC
TTCCAGAAATGGATAGAGTTTCCGAATCAGGAAGTTAACCAGTTTCCCGA
TCGGGAATGTGACCTCTGCGCACTCCGGAAATGGTCGTAGAAGGTAAATA
ACTGATGCATATTGTAAAAGAGGGTGAATAAATACCTTTCACCGGGTAGT
AAAGAAAGCCACCGGGTAATCGCTTCTTAATTCTACTTTTCCCATTCCCA
ATTAAAAACTTCCCTATTGGGAAACTTTTTCTCGATCGGGAAACAAAAAT
CTGCTTTGTTTACAAAATTCTGTTTCCCGTTCGGGAACAATGAAAAGTTT
TGACCAAAACGGGAAACAGAAAATTTATGAAATTTTCAATCTGGAAACAG
TTTCCTTTTCGGGTTATTTTCACCTTCCCGTTCGAGAAATACTTCCCGTT
AAGGCAATAGTTGCCATTTCCATGTAGTGTTTCCGACTGTTAGCGGTGCG
ATCGGCTTCTTTTAATGGGAAATTGTAATGAATTTATATGGAAAATATTT
TCTCGGCGTTTAATCAAAACTTAAGTTAATCTGCTGCTAGTCCACTTTTG
ATCAATCGGTATTTTTGATACTGCGGAAGACCCAAACATAAAAATAGCAT
TTTCACTTTTCAAAGGATTTAGTTTGTATTTAATTAAAATTTTTTGCTTT
ATTTCTTCTATGTCTGAATTAGTCGTCGAGCTTGCTAGACTAAGTCAAAC
GTATAAATGTTTTCGGGTTATTCCATGATATGTTCTCGCCTAAAAGCTCA
GAAAAATCTCTGAACTCGTAAAGGTATCATTTTCTAAATACCGAATCTCG
TAAAAAAATAGCATTTTCACTGAATACAGTAATCTCGTGAAAAACAGCAT
TTTCTAAATCTCACCGAAACAGCGATCTCGTAAGAAAGGGCCTGAAGAGT
TGATTTTAGAAATCCATTGCCTTGAAATGTTTTCATTTATTTTCGTTCAA
CCTAACTATGAGTGATAAGTTTCGCAATATATCCTGTTGTCTAAAATTGC
CAATGGTACACATGTACAGTACACATCCTGCTTTAATGAAGATGATTATT
AATTAATACACAAAGGGAATCGGCGTTCAACCGGCGGTAATGGTTTTCTT
TTCATAACTTCTAGGTTGCCGACCATGTCATTTCTAATGACAATGCAAAC
GGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCACGTTTGAGTACGC
GGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGATTTTCAAACCGTTG
TGTGGATGATCATCATTGGCGATGCTCTCCACAACTTTCTGGATGGTGTT
GCCATAGGAACCGCCTTCACCGACACGGATAAATCATACCTTGGCGGAAT
CAGCACCTCAATCGCTATCTTTGCACACGAACTCCCTCACGAGCTTGGTG
AGTGGCTTGTTCCATGAATATTTTTCCTTTTATTCTGTTTCTAAAATTGC
AAAAGTTTAATCATGCAAATAAGGACAGTTAGCAGGCATTCAATTTATTT
GTTCTCTTCACTCAAGCTCAACGTCAACACTTATTTACTTGCAGGAGATT
TTGCAGTTCTCATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATG
AATTTTCTATCTTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGC
AATGGGGCTCGAATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAG
GCCTTTTCATCTATATTGCTCTGGTTAATATGGTAAGACCTTGTTGCATT
GAAATAACATTTTTGTTTTCAAGATAAAAATGCCACGCCCCGATAACTTA
AACGGCATATCATTTCTCTGCGGGAGACTAGCTTTGTATATCTGGAAAGT
TGCAGTATCTATAAATATTTTAAAGATGCCTCGTCCATCATTTATTTATA
GTTGCCGGAGATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAA
CCATCGCATTAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTC
ATTCTCGGTGTGTACGAAGATGACATCAAGAGTTCACTTTAAGCGTGTAA
ATTCAAGAGAGAGAGAGAGGGTCTTGTCCGAGAAGCTGATGAGCTTTTTG
AAAAGCCACCACACCCACACCCACAAACATCAGTGATATGGTGTTAATGT
TTGAATGAGCTTGTTAGAGCGTCTGTTTCTCTTGCACGCAGAAGAGCACT
ACTGCAAGAAATGATCCACAAAACAGTTGGTATCTTTTCGGACATTGTTA
TCACTATAACAGCTATGCAACTCCATACTCGATAACACTCGAAGGTTTTA
AACTAAGTATACGTTTTATTTATAAGAGAACAATTTCTTTAGAACACACG
ACTCGACAATAGTTTAATTGTTTTAGAACAATATTGTTTCTATTTAGAAA
TGTACGAATCGAAAGCTCAGCCTTCATTTACTGGTTGTTATATATAAAGG
TTGTTTGGGAATATTTACAACTCAAACATTTAAAAAAATT

Coding sequence (CDS) from alignment at sc0000336:23460..33249-

>TCONS_00019795 ID=TCONS_00019795|Name=TCONS_00019795|organism=Clytia hemisphaerica|type=CDS|length=6588bp|location=Sequence derived from alignment at sc0000336:23460..33249- (Clytia hemisphaerica)
TTGCCGGAGATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAAC
CATCGCATTAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCA
TTCTCGGTGTGTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTG
CAGTTCTCATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAAT
TTTCTATCTTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAAT
GGGGCTCGAATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCC
TTTTCATCTATATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCT
AATGACAATGCAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGAC
CACGTTTGAGTACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAG
ATTTTCAAACCGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAAC
TTTCTGGATGGTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATC
ATACCTTGGCGGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCC
CTCACGAGCTTGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCA
CGCTCACGAAGATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGA
AGTCGTTGTTATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTG
GTGATGAATGCACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGC
ATGATCGTTTCCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTG
CACCACACCTGTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCA
TGATAGCGCTGGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTA
TTCCCCCACATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACT
CATCCAACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCA
AAACACCAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACTT
GCCGGAGATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAACCA
TCGCATTAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCATT
CTCGGTGTGTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTGCA
GTTCTCATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTT
TCTATCTTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGG
GGCTCGAATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTT
TTCATCTATATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCTAA
TGACAATGCAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCA
CGTTTGAGTACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGAT
TTTCAAACCGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAACTT
TCTGGATGGTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATCAT
ACCTTGGCGGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCCCT
CACGAGCTTGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCACG
CTCACGAAGATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGAAG
TCGTTGTTATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTGGT
GATGAATGCACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGCAT
GATCGTTTCCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTGCA
CCACACCTGTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCATG
ATAGCGCTGGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTATT
CCCCCACATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACTCA
TCCAACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCAAA
ACACCAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACTTGC
CGGAGATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAACCATC
GCATTAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCATTCT
CGGTGTGTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTGCAGT
TCTCATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTTTC
TATCTTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGGGG
CTCGAATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTTTT
CATCTATATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCTAATG
ACAATGCAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCACG
TTTGAGTACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGATTT
TCAAACCGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAACTTTC
TGGATGGTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATCATAC
CTTGGCGGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCCCTCA
CGAGCTTGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCACGCT
CACGAAGATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGAAGTC
GTTGTTATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTGGTGA
TGAATGCACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGCATGA
TCGTTTCCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTGCACC
ACACCTGTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCATGAT
AGCGCTGGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTATTCC
CCCACATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACTCATC
CAACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCAAAAC
ACCAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACTTGCCG
GAGATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAACCATCGC
ATTAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCATTCTCG
GTGTGTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTGCAGTTC
TCATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTTTCTA
TCTTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGGGGCT
CGAATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTTTTCA
TCTATATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCTAATGAC
AATGCAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCACGTT
TGAGTACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGATTTTC
AAACCGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAACTTTCTG
GATGGTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATCATACCT
TGGCGGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCCCTCACG
AGCTTGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCACGCTCA
CGAAGATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGAAGTCGT
TGTTATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTGGTGATG
AATGCACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGCATGATC
GTTTCCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTGCACCAC
ACCTGTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCATGATAG
CGCTGGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTATTCCCC
CACATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACTCATCCA
ACAATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCAAAACAC
CAACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACTTGCCGGA
GATTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAACCATCGCAT
TAGTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCATTCTCGGT
GTGTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTGCAGTTCTC
ATCAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTTTCTATC
TTCCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGGGGCTCG
AATGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTTTTCATC
TATATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCTAATGACAA
TGCAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCACGTTTG
AGTACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGATTTTCAA
ACCGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAACTTTCTGGA
TGGTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATCATACCTTG
GCGGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCCCTCACGAG
CTTGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCACGCTCACG
AAGATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGAAGTCGTTG
TTATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTGGTGATGAA
TGCACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGCATGATCGT
TTCCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTGCACCACAC
CTGTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCATGATAGCG
CTGGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTATTCCCCCA
CATGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACTCATCCAAC
AATTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCAAAACACCA
ACCACGGAGCACCACGATGATGAAGAGCCTAAATGGAGACTTGCCGGAGA
TTTTACACAGCAACGTTCTGAAGACTCGCAAGGTGTTAACCATCGCATTA
GTGAATGTTGGTCTATGGATTGGTTTTGCTATAATGTTCATTCTCGGTGT
GTACGAAGATGACATCAAGAGTTCACTTTAAGAGATTTTGCAGTTCTCAT
CAGCTCCGGGTTGTCTATCAAACAAGCTTTAATGATGAATTTTCTATCTT
CCTTGACGGCCTTTGTGGGAGGTTTTGTCGGAGTAGCAATGGGGCTCGAA
TGGAAAGCTTCACCCTGGATTTTCGCAATCGTTGCAGGCCTTTTCATCTA
TATTGCTCTGGTTAATATGGTTGCCGACCATGTCATTTCTAATGACAATG
CAAACGGTTCCCTCCCTATGAAGGATGAGAAGAAACCGACCACGTTTGAG
TACGCGGATAGCACACCGAAGAAAGGGTTGCGAATGAAAGATTTTCAAAC
CGTTGTGTGGATGATCATCATTGGCGATGCTCTCCACAACTTTCTGGATG
GTGTTGCCATAGGAACCGCCTTCACCGACACGGATAAATCATACCTTGGC
GGAATCAGCACCTCAATCGCTATCTTTGCACACGAACTCCCTCACGAGCT
TGGCGCTAAACTTGCACGGTCACGATGATGGGCACGACCACGCTCACGAA
GATGGCAACCCTCTTCTCAAAGAAGACTCGTATATCTGGAAGTCGTTGTT
ATTGCTGTTAGGTGTTTACATCTTCATGCAGTTCGAGTTGGTGATGAATG
CACTAGGAGCTGGTCATTCTCATGGACAGCATGGATTGGCATGATCGTTT
CCATCACCATAATCTCTCTTGCATCACTGGCCGGTGCTTGCACCACACCT
GTCACCCACAAAAGGTGGTTTGAACTTCTTTTGGTCACCATGATAGCGCT
GGCTGTTGCAGTGATGATCGGTGATGCAGTTCTCCATCTATTCCCCCACA
TGATCAATCAAACTAAGTTCAGTGAGATTTGTCCCTCACTCATCCAACAA
TTGGACAGTGGTGTGTGTGCCAGTTCTGAGCAAACTACCAAAACACCAAC
CACGGAGCACCACGATGATGAAGAGCCTAAATGGAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011131XLOC_011131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019795-proteinTCONS_00019795-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019795-exon-sc0000336-1575043694:32437..33249TCONS_00019795-exon-sc0000336-1575043694:32437..33249Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:32152..32341TCONS_00019795-exon-sc0000336-1575043694:32152..32341Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:31609..31778TCONS_00019795-exon-sc0000336-1575043694:31609..31778Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:26384..26560TCONS_00019795-exon-sc0000336-1575043694:26384..26560Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:24553..24835TCONS_00019795-exon-sc0000336-1575043694:24553..24835Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:24218..24405TCONS_00019795-exon-sc0000336-1575043694:24218..24405Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1575043694:23460..24048TCONS_00019795-exon-sc0000336-1575043694:23460..24048Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:32437..33249TCONS_00019795-exon-sc0000336-1510915933:32437..33249Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:32152..32341TCONS_00019795-exon-sc0000336-1510915933:32152..32341Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:31609..31778TCONS_00019795-exon-sc0000336-1510915933:31609..31778Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:26384..26560TCONS_00019795-exon-sc0000336-1510915933:26384..26560Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:24553..24835TCONS_00019795-exon-sc0000336-1510915933:24553..24835Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:24218..24405TCONS_00019795-exon-sc0000336-1510915933:24218..24405Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1510915933:23460..24048TCONS_00019795-exon-sc0000336-1510915933:23460..24048Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:32437..33249TCONS_00019795-exon-sc0000336-1491911889:32437..33249Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:32152..32341TCONS_00019795-exon-sc0000336-1491911889:32152..32341Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:31609..31778TCONS_00019795-exon-sc0000336-1491911889:31609..31778Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:26384..26560TCONS_00019795-exon-sc0000336-1491911889:26384..26560Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:24553..24835TCONS_00019795-exon-sc0000336-1491911889:24553..24835Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:24218..24405TCONS_00019795-exon-sc0000336-1491911889:24218..24405Clytia hemisphaericaexon
TCONS_00019795-exon-sc0000336-1491911889:23460..24048TCONS_00019795-exon-sc0000336-1491911889:23460..24048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000336supercontigsc0000336:23460..33249 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.93176	5.70581	3.4607	2.85687	5.39084	4.5691	4.53843	4.79205	2.51287	4.76144	3.34778	3.09171	28.7837	23.9694	4.97	7.5829	8.8454	8.54534	14.119	23.0225	6.88843	8.41504	7.9471	10.72	23.8998	19.087	12.532	12.5017	5.43879	5.34076
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Vocabulary: Biological Process
TermDefinition
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046873metal ion transmembrane transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0046873 metal ion transmembrane transporter activity
Blast
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BLAST of TCONS_00019795 vs. Swiss-Prot (Human)
Match: S39AE (Zinc transporter ZIP14 OS=Homo sapiens GN=SLC39A14 PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 2.666e-54
Identity = 140/438 (31.96%), Postives = 215/438 (49.09%), Query Frame = 1 
Query:  778 RANDDEHAKYKK----CYSAEQILEIYGLTKGSMINQTKFSEICPSLIQQLDSGVCASSEQTTKTPTTEHHDDEEPKWRPWIGMIVSITIISLASLAGACTTPVTHKRWFELLLVTMIALAVAVMIGDAVLHLFPXXXXXXXXXXXXXXXXXXXXPLLKEDSYIWKSLLLLLGVYIFMQFELVM-------NALGAGHSH----------------------GQVADHVI---SNDNANGSLPMKDEK------KPTTFEYADSTPK--KGLRMKDFQTVVWMIIIGDALHNFLDGVAIGTAFTDTDKSYLGGISTSIAIFAHELPHELGDFAVLISSGLSIKQALMMNFLSSLTXXXXXXXXXXMGLEWKASPWIFAIVAGLFIYIALVNMLP---EILHSNVLKTRKVLTIALVNVGLWIGFAIMFILGVYEDDIK 1950
            R N  +H +  +    C+S+  +   +  ++ S I  ++  E CP+++QQLDS  C +SE        +  +        W   ++ +T+ISL SL GA   P   K +++ LL+  IALA+  +  +A+  L P A   +              PL  ED Y+ KS ++  G Y+F   E ++       N    GHSH                      G + DH+I    +   +G  PM DEK           + + S     KG+R  D  T+ WMI + D LHNF+DG+AIG +FT    S   GISTS+AI   E PHELGDF +L+++G+SI+QAL  NFLS+   ++G   G+  G  + A+ WIFA+  G+F+YI+L +M P   E+   +  K   ++   + N+GL  GF IM +L +Y   I+
Sbjct:   75 RGNVTQHVQGHRNLSTCFSSGDLFTAHNFSEQSRIGSSELQEFCPTILQQLDSRAC-TSENQENEENEQTEEGRPSAVEVWGYGLLCVTVISLCSLLGASVVPFMKKTFYKRLLLYFIALAIGTLYSNALFQLIPEAFGFN--------------PL--EDYYVSKSAVVFGGFYLFFFTEKILKILLKQKNEHHHGHSHYASESLPSKKDQEEGVMEKLQNGDL-DHMIPQHCSSELDGKAPMVDEKVIVGSLSVQDLQASQSACYWLKGVRYSDIGTLAWMITLSDGLHNFIDGLAIGASFT---VSVFQGISTSVAILCEEFPHELGDFVILLNAGMSIQQALFFNFLSACCCYLGLAFGILAGSHFSAN-WIFALAGGMFLYISLADMFPEMNEVCQEDERKGSILIPFIIQNLGLLTGFTIMVVLTMYSGQIQ 490
The following BLAST results are available for this feature:
BLAST of TCONS_00019795 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S39AE2.666e-5431.96Zinc transporter ZIP14 OS=Homo sapiens GN=SLC39A14... [more]
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