|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019793 ID=TCONS_00019793|Name=TCONS_00019793|organism=Clytia hemisphaerica|type=transcript|length=1331bp
GTAGACAACAACAAGTATACTTTCGATGATATCTTGGCTGACGATAATGG
AGTGTACACATACGAGGGCTCTCCAACTAATCACGTGTATTTTGAAAACG
GATACTGTTACACTGCTCacaaaaacgaaaatgaaaatggtTACTTTATC
AAAAGAAGAACTGGAAAACGATATGTCGATGAGTTTGTCAATAGAGATAA
CGTGTATGTTTTATATCGAACTTACCGTAGACACACATTTTACAAAGGAT
TCACAAATGTTGTTTGTAGAATCAAAAATGTCGATGGTGTTTCACTACGC
TACTGTTTGGTCATTTATGAGTGGGAATCAGGAGAAGAAGAAAGCAATTT
TACTGTGCCCTGTCATGGCAACGCAAAAACTGAAATAATGAAAGAAACTC
CTTTTCTCAGAACTGAAAAAAGGATAATCAATACCATGaaagacaacttg
aaaaatggaGAAAGACCACAGGATATTTACATCAATAATATTGAATCGTC
AGGAGGCCCTATGAATGGTACATCAGTATCTTCTTTCCCAAGGAACATGA
AACAGatCTACAACCTTGCCCAGAAGAATAAATTTGAGACGATCGATATA
AGAGATACCGAAGTAGATGATGTCACCATAGATGAAATGCTTCAGATAGT
GAAGCACATGAAGATGAACCCGGAATCCCTAATAAAAAACGTCGTCTTGA
CTCCAAACGAATATTTTATTACTGCATTTGATGACCAACAAATCAATGAT
ATCAACATGTTTTGCACTACAAAGACGCGCCCCTTGGTGATGGACACAAC
ATTTGACGTTTGTGACCTATGGCTGACAGATACAGCTTATCAAAACCTGC
GATTGGTCAACTCGAAGGGCGATCACCCTTGGTTTTATGGGCCTTGTCTC
CTGCATATGCAAAAGACAACTGAAACATTTGCTCGTTTTGCACTTGACAT
GGTTGTGTCTGGGTTGAAAAATACCCTAGGTTTTCTAGGTACTGATATGG
AAAAGGCCATGTACGAAGGCTTTAAAATCGCTTTTCCGGAACTAAACAGT
CTGCTATGTGTGAAGCATATTCGTGATGCCGAtaaaagaaaattatcaaa
gATCGGAGGAACTGGTCACCAGAGGATTTTGCGTGACATCTATGGCTCGA
ATGATGGTATCACTAAAGAGCTTGGGTTGGCTTCTTCGCTAGACAAAGAC
GATTTTCAAGCCAAACTTTCTTCGCTAAAGGAAATCTGGGACTCGCTCAC
AGATGGATTTCACAATTGGTTCTCACGTAACAGAGCTTCGAAGTTTATTG
AATGCGTCATAGAATCTGCTAGAGAATCGAG Run BLAST on NCBI protein sequence of TCONS_00019793-protein >TCONS_00019793-protein ID=TCONS_00019793-protein|Name=TCONS_00019793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
VDNNKYTFDDILADDNGVYTYEGSPTNHVYFENGYCYTAHKNENENGYFI
KRRTGKRYVDEFVNRDNVYVLYRTYRRHTFYKGFTNVVCRIKNVDGVSLR
YCLVIYEWESGEEESNFTVPCHGNAKTEIMKETPFLRTEKRIINTMKDNL
KNGERPQDIYINNIESSGGPMNGTSVSSFPRNMKQIYNLAQKNKFETIDI
RDTEVDDVTIDEMLQIVKHMKMNPESLIKNVVLTPNEYFITAFDDQQIND
INMFCTTKTRPLVMDTTFDVCDLWLTDTAYQNLRLVNSKGDHPWFYGPCL
LHMQKTTETFARFALDMVVSGLKNTLGFLGTDMEKAMYEGFKIAFPELNS
LLCVKHIRDADKRKLSKIGGTGHQRILRDIYGSNDGITKELGLASSLDKD
DFQAKLSSLKEIWDSLTDGFHNWFSRNRASKFIECVIESARES Run BLAST on NCBI transcript from alignment at sc0000336:322735..327123+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019793 ID=TCONS_00019793|Name=TCONS_00019793|organism=Clytia hemisphaerica|type=transcript|length=4389bp|location=Sequence derived from alignment at sc0000336:322735..327123+ (Clytia hemisphaerica)
GTAGACAACAACAAGTATACTTTCGATGATATCTTGGCTGACGATAATGG
AGTGTACACATACGAGGGCTCTCCAACTAATCACGTGTATTTTGAAAACG
GATACTGTTACACTGCTCacaaaaacgaaaatgaaaatggtTACTTTATC
AAAAGAAGAACTGGAAAACGATATGTCGATGAGTTTGTCAATAGAGATAA
CGTGTATGTTTTATATCGAACTTACCGTAGACACACATTTTACAAAGGAT
TCACAAATGTTGTTTGTAGAATCAAAAATGTCGATGGTGTTTCACTACGC
TACTGTTTGGTCATTTATGAGTGGGAATCAGGAGAAGAAGAAAGCAATTT
TACTGTGCCCTGTCATGGCAACGCAAAAACTGAAATAATGAAAGAAACTC
CTTTTCTCAGAACTGAAAAAAGGATAATCAATACCATGaaagacaacttg
aaaaatggaGAAAGACCACAGGATATTTACATCAATAATATTGAATCGTC
AGGAGGCCCTATGAATGGTACATCAGTATCTTCTTTCCCAAGGAACATGA
AACAGGtataatcaaaataaagattaaaaaatattatttacatATACTAC
CATAGGACTGTTGGAAAATGAAATGGAAAATTACTGTTATTACAATATAA
AAATTTCGGTCACAAACAAAGCTTTATTTTATCTTGAGTCAGGGAAAACT
AGCCTTTGTCAGCGAGTATGATTTTAGGCAGAAGTTGGGAAATTTATTCT
GAGGGACTGTTGGGAACCCTTATTTTAAGGTTCCTTATATGTTGACATAC
AAAAAAATGCTGACCTTGCAAaatttgctgttttttttaagTATTCAAGC
ATGCGCATTTGGCTGAATCAGGAAtttcaccactttcgttttctctaaat
caaaacaaaaacttgaacTTACCGAAAAGCACGTGCCTTGTCAGCTAGTA
CAATGGCACAACACACTTAAATTGCGGCAAGGAACCTTTAAGGATTGATT
ATCAATGTTTAGAAGTGatgcaaatttattttcaatactgGCAGAGCTGA
TTAAATAAATAGTCTTCATTTTGTGATTATACACGAAGGAGATTATTAGA
TCAATGGATGCTCATTAtcataaaactgaaaattgcCTTTTTATTCATAT
ACCTTACATGGGTTTTTCGATTCGTGACGTTACACAATGTTCATAAAAAC
CCACCTCAGGTTTAAAAATTAGCTTAATCagagcatttttagtccaaaaa
tTGCTAATTACTAGGACTCCACCTTAAGGCCCTTTAAATTAGGAAAACAC
AGTCCACTTTTAACCCTTTTTACGCCCAAAGACCAAAAATTATGCCAATA
AAATTGCCAACATAAAAATGATTCACAAggtaatattttccttttcagat
CTACAACCTTGCCCAGAAGAATAAATTTGAGACGATCGATATAAGAGATA
CCGAAGTAGATGATGTCACCATAGATGAAATGCTTCAGATAGTGAAGCAC
ATGAAGATGAACCCGGAATCCCTAATAAAAAACGTCGTCTTGACTCCAAA
CGAATATTTTATTACTGCATTTGATGACCAACAAATCAATGATATCAACA
TGTTTTGCACTACAAAGACGCGCCCCTTGGTGATGGACACAACATTTGAC
GTTTGTGACCTATGGCTGACAGATACAGCTTATCAAAACCTGCGATTGGT
CAACTCGAAGGGCGATCACCCTTGGTTTTATGGGCCTTGTCTCCTGCATA
TGCAAAAGACAACTGAAACATTTGCTCGTTTTGCACTTGACATGGTTGTG
TCTGGGTTGAAAAATACCCTAGGTTTTCTAGGTAAGTACTTTTTATCAAA
TGCTAACTACTATTCCCTTAATTGCAAAATAGCTCATTTTTTTATATCAT
ACAGTTTTATTcatgtatttttttcattcgaATGGATTTCATTCGATTTA
ATGAGCTTCGAATTATGCGAGCTTTCCTTTGTTTGGTCAGATTTTGTTAC
AGTACAGTCTTGAGACCACTTTATTGCATGACAATTTCGCGGTCATTTTA
ATTTCGctgtttttttgccgaaaattgcatttcgctGTCCAAGAGAAAAA
GTGTATGTTGCGGCATTTTNtgtttccaattttttttcggacactttggt
gtgattttcggacaaatatgacggtctcaggcaaaaatcatagggttaaa
aattaatgaaaattctagctagagaaaacggagacctgttgtatattttt
ggaaagctctcaaaaatataagattagagatatattgcaagtataggtga
tttatgtacctaactcgagatattaacccttgaaaaccgttttttcagcc
agaaacagctattttgtccagtctttgcgctttttgaagctcaatatctc
tagttaggtactgaaatcacctatacttttaatatatctctaatcctaat
ttttttagagctttccaaaattatacaacaggtctccgttttctcgagct
aaaattttcattgatttttaaccctatgattttttcctgagaccgtcata
tttgtcaaattggaaacatagtaatttcgattcccctaccccttagcttt
ccaaaaatgtataacaagtgcttctaacaaaacagtcgagcgattttaca
aaatttggttgatttGCAAAATAGTTAATTCTTTTATATCATACAGTTTT
ATTcatgtatttttttcattcgaATGGATTTCATTCGATTTAATGAGCTT
CGAATTATGCGAGTTTTCCTTTGTTTGGCCAGATTTTGTTACAGTACAGT
CTTGAGACTACTTTATTGCATGAAAATTTTGCGGTCATTTTAATTTCGct
gtttttttgccgaaaattgcatttcgctGTCCAagagaaaaagtgtattt
tgcgacattttaatttcgcggttccgAAGCTTTGAAAGATGAATTACGCT
TTTTTACGCCAAAAAGACCGAAAAAAGACATGATTTTTATGTATATTGGA
TACGAagtcgaaaaaactttttgtgcaTTTTAATGTCGCGGTTGATCATG
CCATAAAATCGTTTTTCGACCCAACCTTCCCTTTGTAATTGCTGGACCCA
AATACTTGGTATATAATTTCAGCCCcatctttttgagtttttttttttgg
tttaacccactccccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNccccccccccccccccctccaaaaaaaaaattagagagCTGAC
GCTATGATTATGGCGATTGCGACGTTTCTGGCCTATTTTCTTTTAGGTAC
TGATATGGAAAAGGCCATGTACGAAGGCTTTAAAATCGCTTTTCCGGAAC
TAAACAGTCTGCTATGTGTGAAGCATATTCGTGATGCCGAtaaaagaaaa
ttatcaaagATCGGAGGAACTGGTCACCAGAGGATTTTGCGTGACATCTA
TGGCTCGAATGATGGTATCACTAAAGAGCTTGGGTTGGCTTCTTCGCTAG
ACAAAGACGATTTTCAAGCCAAACTTTCTTCGCTAAAGGAAATCTGGGAC
TCGCTCACAGATGGATTTCACAATTGGTTCTCACGTAACAGAGCTTCGAA
GTTTATTGAATGCGTCATAGAATCTGCTAGAGAATCGAG Coding sequence (CDS) from alignment at sc0000336:322735..327123+ >TCONS_00019793 ID=TCONS_00019793|Name=TCONS_00019793|organism=Clytia hemisphaerica|type=CDS|length=3987bp|location=Sequence derived from alignment at sc0000336:322735..327123+ (Clytia hemisphaerica)
GTAGACAACAACAAGTATACTTTCGATGATATCTTGGCTGACGATAATGG
AGTGTACACATACGAGGGCTCTCCAACTAATCACGTGTATTTTGAAAACG
GATACTGTTACACTGCTCacaaaaacgaaaatgaaaatggtTACTTTATC
AAAAGAAGAACTGGAAAACGATATGTCGATGAGTTTGTCAATAGAGATAA
CGTGTATGTTTTATATCGAACTTACCGTAGACACACATTTTACAAAGGAT
TCACAAATGTTGTTTGTAGAATCAAAAATGTCGATGGTGTTTCACTACGC
TACTGTTTGGTCATTTATGAGTGGGAATCAGGAGAAGAAGAAAGCAATTT
TACTGTGCCCTGTCATGGCAACGCAAAAACTGAAATAATGAAAGAAACTC
CTTTTCTCAGAACTGAAAAAAGGATAATCAATACCATGaaagacaacttg
aaaaatggaGAAAGACCACAGGATATTTACATCAATAATATTGAATCGTC
AGGAGGCCCTATGAATGGTACATCAGTATCTTCTTTCCCAAGGAACATGA
AACAGatCTACAACCTTGCCCAGAAGAATAAATTTGAGACGATCGATATA
AGAGATACCGAAGTAGATGATGTCACCATAGATGAAATGCTTCAGATAGT
GAAGCACATGAAGATGAACCCGGAATCCCTAATAAAAAACGTCGTCTTGA
CTCCAAACGAATATTTTATTACTGCATTTGATGACCAACAAATCAATGAT
ATCAACATGTTTTGCACTACAAAGACGCGCCCCTTGGTGATGGACACAAC
ATTTGACGTTTGTGACCTATGGCTGACAGATACAGCTTATCAAAACCTGC
GATTGGTCAACTCGAAGGGCGATCACCCTTGGTTTTATGGGCCTTGTCTC
CTGCATATGCAAAAGACAACTGAAACATTTGCTCGTTTTGCACTTGACAT
GGTTGTGTCTGGGTTGAAAAATACCCTAGGTTTTCTAGGTACTGATATGG
AAAAGGCCATGTACGAAGGCTTTAAAATCGCTTTTCCGGAACTAAACAGT
CTGCTATGTGTGAAGCATATTCGTGATGCCGAtaaaagaaaattatcaaa
gATCGGAGGAACTGGTCACCAGAGGATTTTGCGTGACATCTATGGCTCGA
ATGATGGTATCACTAAAGAGCTTGGGTTGGCTTCTTCGCTAGACAAAGAC
GATTTTCAAGCCAAACTTTCTTCGCTAAAGGAAATCTGGGACTCGCTCAC
AGATGGATTTCACAATTGGTTCTCACGTAACAGAGCTTCGAAGTTTATTG
AATGCGTCATAGAATCTGCTAGAGAATCGGTAGACAACAACAAGTATACT
TTCGATGATATCTTGGCTGACGATAATGGAGTGTACACATACGAGGGCTC
TCCAACTAATCACGTGTATTTTGAAAACGGATACTGTTACACTGCTCaca
aaaacgaaaatgaaaatggtTACTTTATCAAAAGAAGAACTGGAAAACGA
TATGTCGATGAGTTTGTCAATAGAGATAACGTGTATGTTTTATATCGAAC
TTACCGTAGACACACATTTTACAAAGGATTCACAAATGTTGTTTGTAGAA
TCAAAAATGTCGATGGTGTTTCACTACGCTACTGTTTGGTCATTTATGAG
TGGGAATCAGGAGAAGAAGAAAGCAATTTTACTGTGCCCTGTCATGGCAA
CGCAAAAACTGAAATAATGAAAGAAACTCCTTTTCTCAGAACTGAAAAAA
GGATAATCAATACCATGaaagacaacttgaaaaatggaGAAAGACCACAG
GATATTTACATCAATAATATTGAATCGTCAGGAGGCCCTATGAATGGTAC
ATCAGTATCTTCTTTCCCAAGGAACATGAAACAGatCTACAACCTTGCCC
AGAAGAATAAATTTGAGACGATCGATATAAGAGATACCGAAGTAGATGAT
GTCACCATAGATGAAATGCTTCAGATAGTGAAGCACATGAAGATGAACCC
GGAATCCCTAATAAAAAACGTCGTCTTGACTCCAAACGAATATTTTATTA
CTGCATTTGATGACCAACAAATCAATGATATCAACATGTTTTGCACTACA
AAGACGCGCCCCTTGGTGATGGACACAACATTTGACGTTTGTGACCTATG
GCTGACAGATACAGCTTATCAAAACCTGCGATTGGTCAACTCGAAGGGCG
ATCACCCTTGGTTTTATGGGCCTTGTCTCCTGCATATGCAAAAGACAACT
GAAACATTTGCTCGTTTTGCACTTGACATGGTTGTGTCTGGGTTGAAAAA
TACCCTAGGTTTTCTAGGTACTGATATGGAAAAGGCCATGTACGAAGGCT
TTAAAATCGCTTTTCCGGAACTAAACAGTCTGCTATGTGTGAAGCATATT
CGTGATGCCGAtaaaagaaaattatcaaagATCGGAGGAACTGGTCACCA
GAGGATTTTGCGTGACATCTATGGCTCGAATGATGGTATCACTAAAGAGC
TTGGGTTGGCTTCTTCGCTAGACAAAGACGATTTTCAAGCCAAACTTTCT
TCGCTAAAGGAAATCTGGGACTCGCTCACAGATGGATTTCACAATTGGTT
CTCACGTAACAGAGCTTCGAAGTTTATTGAATGCGTCATAGAATCTGCTA
GAGAATCGGTAGACAACAACAAGTATACTTTCGATGATATCTTGGCTGAC
GATAATGGAGTGTACACATACGAGGGCTCTCCAACTAATCACGTGTATTT
TGAAAACGGATACTGTTACACTGCTCacaaaaacgaaaatgaaaatggtT
ACTTTATCAAAAGAAGAACTGGAAAACGATATGTCGATGAGTTTGTCAAT
AGAGATAACGTGTATGTTTTATATCGAACTTACCGTAGACACACATTTTA
CAAAGGATTCACAAATGTTGTTTGTAGAATCAAAAATGTCGATGGTGTTT
CACTACGCTACTGTTTGGTCATTTATGAGTGGGAATCAGGAGAAGAAGAA
AGCAATTTTACTGTGCCCTGTCATGGCAACGCAAAAACTGAAATAATGAA
AGAAACTCCTTTTCTCAGAACTGAAAAAAGGATAATCAATACCATGaaag
acaacttgaaaaatggaGAAAGACCACAGGATATTTACATCAATAATATT
GAATCGTCAGGAGGCCCTATGAATGGTACATCAGTATCTTCTTTCCCAAG
GAACATGAAACAGatCTACAACCTTGCCCAGAAGAATAAATTTGAGACGA
TCGATATAAGAGATACCGAAGTAGATGATGTCACCATAGATGAAATGCTT
CAGATAGTGAAGCACATGAAGATGAACCCGGAATCCCTAATAAAAAACGT
CGTCTTGACTCCAAACGAATATTTTATTACTGCATTTGATGACCAACAAA
TCAATGATATCAACATGTTTTGCACTACAAAGACGCGCCCCTTGGTGATG
GACACAACATTTGACGTTTGTGACCTATGGCTGACAGATACAGCTTATCA
AAACCTGCGATTGGTCAACTCGAAGGGCGATCACCCTTGGTTTTATGGGC
CTTGTCTCCTGCATATGCAAAAGACAACTGAAACATTTGCTCGTTTTGCA
CTTGACATGGTTGTGTCTGGGTTGAAAAATACCCTAGGTTTTCTAGGTAC
TGATATGGAAAAGGCCATGTACGAAGGCTTTAAAATCGCTTTTCCGGAAC
TAAACAGTCTGCTATGTGTGAAGCATATTCGTGATGCCGAtaaaagaaaa
ttatcaaagATCGGAGGAACTGGTCACCAGAGGATTTTGCGTGACATCTA
TGGCTCGAATGATGGTATCACTAAAGAGCTTGGGTTGGCTTCTTCGCTAG
ACAAAGACGATTTTCAAGCCAAACTTTCTTCGCTAAAGGAAATCTGGGAC
TCGCTCACAGATGGATTTCACAATTGGTTCTCACGTAACAGAGCTTCGAA
GTTTATTGAATGCGTCATAGAATCTGCTAGAGAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019793-exon-sc0000336-1491911889:322735..323289 | TCONS_00019793-exon-sc0000336-1491911889:322735..323289 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1510915933:322735..323289 | TCONS_00019793-exon-sc0000336-1510915933:322735..323289 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1575043694:322735..323289 | TCONS_00019793-exon-sc0000336-1575043694:322735..323289 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1491911889:324133..324565 | TCONS_00019793-exon-sc0000336-1491911889:324133..324565 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1510915933:324133..324565 | TCONS_00019793-exon-sc0000336-1510915933:324133..324565 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1575043694:324133..324565 | TCONS_00019793-exon-sc0000336-1575043694:324133..324565 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1491911889:326781..327123 | TCONS_00019793-exon-sc0000336-1491911889:326781..327123 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1510915933:326781..327123 | TCONS_00019793-exon-sc0000336-1510915933:326781..327123 | Clytia hemisphaerica | exon |
| TCONS_00019793-exon-sc0000336-1575043694:326781..327123 | TCONS_00019793-exon-sc0000336-1575043694:326781..327123 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000336 | supercontig | sc0000336:322735..327123 + |
Blast
The following BLAST results are available for this feature:
|
