TCONS_00019771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019771
Unique NameTCONS_00019771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019771 ID=TCONS_00019771|Name=TCONS_00019771|organism=Clytia hemisphaerica|type=transcript|length=2185bp
CCTTTATGCAATAAAGTTCATATGTTgatacaaaaaaaatcaaaacaata
tgcTTCGTTCCTTTCGAAAAGAAAACAGAACAAATTTTTGCTGTTCTGTT
GACAGAAGACCATCGTTTAGCTCAATGTCCACACGTCTGTTTATCTAAAG
ATCTTTTTATGAAAGTTCAAGGACTTTATTTATTGATCCTGTTTTTGTTG
GAATGTCATCTTCTGTTATGTCGTGCGGTTGAACTTGAAAACGATTTTAT
AATGCTGATACATACGCGTTGATGATTGACGATACACAGAAAGGTTTATT
ATAAAACTACTACAGGTTAAAGCTTCTGATAGACTCAGTTGGTCGATTAG
TTTATGAGACGATGGATCGCAAAAGGAGTCACGATTCGGGGCAAGGAATT
GCTCTgcaacatgaaaacaaaaaggAGCTAAATGTTGACGACTTTCTACA
CCTAGTCGGTGATTATGGAAAGTTCCAAAAAACCCTTAATGTCATTTTTG
GATTGATGGAGATTCCATACATCTTTGTGATCTACATATTAACATTCACC
GCATTCGAACCAGAATGGAGATGCGCTGAAAACAGTACAGTATGTTCACT
AAATGGAACTTTTACGAGTGAAAATAATTTTCGTTGTCATATTCCAAGAT
CGGAATGGGAATATCTTCAACCGAAAGAATATTCAATTGTTGTTGAATAT
GATTTATCATGTGGTGGTGAATGGCTGATTAGTCTCTCTGTTTCCATCAT
TTTTGTTGGCGCTTTATTTGGAGCTGTAATACTAACATGGGTATCCGACA
ATTTTGGACGAAAAAAACTCATGTTTATAAGTTATACCGCTGGAACTATA
GCGAACTTTGCGTCTTGTTTGATGCCGAATATGTCCTTATTTATCATGTT
CCGGTTCTTTTCCGGTTTTTTTATGCCGGGTGCTAATGTCTTTGTAATGA
TTATTGAAACTGTTGGAGAGAAACACCGTGCATTTGCCGGTAATTTGATA
TGGTTGTTCTACGCTGTAGCCTTATGTTTGCTACCATTAAAGGCTTATTT
CATCAGTTCCTGGAAATTGCTTTTTGTTGCTGGATCTTTACCTTATTTAG
TATTCGTCGCAACATATCAATTTGTACCTGAATCTGTCAGATGGTTGAGG
CTGAAAAGTCGTACAAAAGACGCTTTAGCAATTTTCCAACGAATGGCTAA
ATGGAATGGGAGGGTACTGGACCCGACAGTAACTCTCTCCCCAGTCTCCA
AAGAGAAAGAGATTACCAACCCATTGGATGTTTTCCGACCTAAACAAATG
GCAATGACATCAATTgtgtttattttctgtttttacACAAACTCACTCGT
TTATTTTGGCCTCACTATGACTGCTGGTGACTTGGGCTCAGGCTCTTTGC
ATTTGAACTTTGTACTTATGAGCCTGGTGGAATTTCCAGCAGCTTTATTA
GCTACCTACTGCTGTGATAAATTTGGTCGTAaaaaatcttcaacctttcc
gCTTGCTTTATCAGGGCTATTAGTCGTTACTGTATCCTTATTACCAATCA
CAACACAAGCTTTTAGAATGGTTCGCACGATAACAGGAATATTTGCGAAA
CTGTTTATCACCATGAGTTATGATTGTATAGCAACTTTGGTCGTTGAAGC
CTACCCGACGAATATACGATCGGAAGCGCTAGGCATTATGGGTGTAGCTG
CAACAATTGGAGGTGCAAGTGCACCATGGGTAGCCAAAGGACTTTCAACA
CTGGTCGCTGAATTACCTTTTTATGTAATGGGTACGCTCGGTGTAGTGGC
TGGAGTATCGTGTTACTTACTTCCAGAAACAAAAGGTACTTTACTACGAG
AGAGTAAGATTGACTTTCAACTAGTTCCCACCCACCCTCCAGACAATGAT
GACAAGGAAGCGAGACAAAGAGAAAAGTCTCACTTTGAATCAACTGCTTG
AATGCTGCAGTAAAATTTACAATACAATCACAAcaataattaaaaataat
tgtACATCTATTGCTTAATCTAATTTATAATTACTTTTGTACAATATTTT
CTTGTCCAGATTTTCACTTCCAATCTTTCATTAGATATTTCCTATaagat
gatttaaaaaaaaaactaacaaagtTATCCATCAAGTTAAACAATCCTTT
GGGGCTCCCCCGAAATTCCTAACATTGCTTTACCG
Run BLAST on NCBI

protein sequence of TCONS_00019771-protein

>TCONS_00019771-protein ID=TCONS_00019771-protein|Name=TCONS_00019771-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MDRKRSHDSGQGIALQHENKKELNVDDFLHLVGDYGKFQKTLNVIFGLME
IPYIFVIYILTFTAFEPEWRCAENSTVCSLNGTFTSENNFRCHIPRSEWE
YLQPKEYSIVVEYDLSCGGEWLISLSVSIIFVGALFGAVILTWVSDNFGR
KKLMFISYTAGTIANFASCLMPNMSLFIMFRFFSGFFMPGANVFVMIIET
VGEKHRAFAGNLIWLFYAVALCLLPLKAYFISSWKLLFVAGSLPYLVFVA
TYQFVPESVRWLRLKSRTKDALAIFQRMAKWNGRVLDPTVTLSPVSKEKE
ITNPLDVFRPKQMAMTSIVFIFCFYTNSLVYFGLTMTAGDLGSGSLHLNF
VLMSLVEFPAALLATYCCDKFGRKKSSTFPLALSGLLVVTVSLLPITTQA
FRMVRTITGIFAKLFITMSYDCIATLVVEAYPTNIRSEALGIMGVAATIG
GASAPWVAKGLSTLVAELPFYVMGTLGVVAGVSCYLLPETKGTLLRESKI
DFQLVPTHPPDNDDKEARQREKSHFESTA
Run BLAST on NCBI

transcript from alignment at sc0000335:276430..278614

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019771 ID=TCONS_00019771|Name=TCONS_00019771|organism=Clytia hemisphaerica|type=transcript|length=2185bp|location=Sequence derived from alignment at sc0000335:276430..278614 (Clytia hemisphaerica)
CGGTAAAGCAATGTTAGGAATTTCGGGGGAGCCCCAAAGGATTGTTTAAC
TTGATGGATAactttgttagttttttttttaaatcatcttATAGGAAATA
TCTAATGAAAGATTGGAAGTGAAAATCTGGACAAGAAAATATTGTACAAA
AGTAATTATAAATTAGATTAAGCAATAGATGTacaattatttttaattat
tgTTGTGATTGTATTGTAAATTTTACTGCAGCATTCAAGCAGTTGATTCA
AAGTGAGACTTTTCTCTTTGTCTCGCTTCCTTGTCATCATTGTCTGGAGG
GTGGGTGGGAACTAGTTGAAAGTCAATCTTACTCTCTCGTAGTAAAGTAC
CTTTTGTTTCTGGAAGTAAGTAACACGATACTCCAGCCACTACACCGAGC
GTACCCATTACATAAAAAGGTAATTCAGCGACCAGTGTTGAAAGTCCTTT
GGCTACCCATGGTGCACTTGCACCTCCAATTGTTGCAGCTACACCCATAA
TGCCTAGCGCTTCCGATCGTATATTCGTCGGGTAGGCTTCAACGACCAAA
GTTGCTATACAATCATAACTCATGGTGATAAACAGTTTCGCAAATATTCC
TGTTATCGTGCGAACCATTCTAAAAGCTTGTGTTGTGATTGGTAATAAGG
ATACAGTAACGACTAATAGCCCTGATAAAGCAAGcggaaaggttgaagat
ttttTACGACCAAATTTATCACAGCAGTAGGTAGCTAATAAAGCTGCTGG
AAATTCCACCAGGCTCATAAGTACAAAGTTCAAATGCAAAGAGCCTGAGC
CCAAGTCACCAGCAGTCATAGTGAGGCCAAAATAAACGAGTGAGTTTGTg
taaaaacagaaaataaacacAATTGATGTCATTGCCATTTGTTTAGGTCG
GAAAACATCCAATGGGTTGGTAATCTCTTTCTCTTTGGAGACTGGGGAGA
GAGTTACTGTCGGGTCCAGTACCCTCCCATTCCATTTAGCCATTCGTTGG
AAAATTGCTAAAGCGTCTTTTGTACGACTTTTCAGCCTCAACCATCTGAC
AGATTCAGGTACAAATTGATATGTTGCGACGAATACTAAATAAGGTAAAG
ATCCAGCAACAAAAAGCAATTTCCAGGAACTGATGAAATAAGCCTTTAAT
GGTAGCAAACATAAGGCTACAGCGTAGAACAACCATATCAAATTACCGGC
AAATGCACGGTGTTTCTCTCCAACAGTTTCAATAATCATTACAAAGACAT
TAGCACCCGGCATAAAAAAACCGGAAAAGAACCGGAACATGATAAATAAG
GACATATTCGGCATCAAACAAGACGCAAAGTTCGCTATAGTTCCAGCGGT
ATAACTTATAAACATGAGTTTTTTTCGTCCAAAATTGTCGGATACCCATG
TTAGTATTACAGCTCCAAATAAAGCGCCAACAAAAATGATGGAAACAGAG
AGACTAATCAGCCATTCACCACCACATGATAAATCATATTCAACAACAAT
TGAATATTCTTTCGGTTGAAGATATTCCCATTCCGATCTTGGAATATGAC
AACGAAAATTATTTTCACTCGTAAAAGTTCCATTTAGTGAACATACTGTA
CTGTTTTCAGCGCATCTCCATTCTGGTTCGAATGCGGTGAATGTTAATAT
GTAGATCACAAAGATGTATGGAATCTCCATCAATCCAAAAATGACATTAA
GGGTTTTTTGGAACTTTCCATAATCACCGACTAGGTGTAGAAAGTCGTCA
ACATTTAGCTcctttttgttttcatgttgcAGAGCAATTCCTTGCCCCGA
ATCGTGACTCCTTTTGCGATCCATCGTCTCATAAACTAATCGACCAACTG
AGTCTATCAGAAGCTTTAACCTGTAGTAGTTTTATAATAAACCTTTCTGT
GTATCGTCAATCATCAACGCGTATGTATCAGCATTATAAAATCGTTTTCA
AGTTCAACCGCACGACATAACAGAAGATGACATTCCAACAAAAACAGGAT
CAATAAATAAAGTCCTTGAACTTTCATAAAAAGATCTTTAGATAAACAGA
CGTGTGGACATTGAGCTAAACGATGGTCTTCTGTCAACAGAACAGCAAAA
ATTTGTTCTGTTTTCTTTTCGAAAGGAACGAAgcatattgttttgatttt
ttttgtatcAACATATGAACTTTATTGCATAAAGG

Coding sequence (CDS) from alignment at sc0000335:276430..278614

>TCONS_00019771 ID=TCONS_00019771|Name=TCONS_00019771|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at sc0000335:276430..278614 (Clytia hemisphaerica)
TCAAGCAGTTGATTCAAAGTGAGACTTTTCTCTTTGTCTCGCTTCCTTGT
CATCATTGTCTGGAGGGTGGGTGGGAACTAGTTGAAAGTCAATCTTACTC
TCTCGTAGTAAAGTACCTTTTGTTTCTGGAAGTAAGTAACACGATACTCC
AGCCACTACACCGAGCGTACCCATTACATAAAAAGGTAATTCAGCGACCA
GTGTTGAAAGTCCTTTGGCTACCCATGGTGCACTTGCACCTCCAATTGTT
GCAGCTACACCCATAATGCCTAGCGCTTCCGATCGTATATTCGTCGGGTA
GGCTTCAACGACCAAAGTTGCTATACAATCATAACTCATGGTGATAAACA
GTTTCGCAAATATTCCTGTTATCGTGCGAACCATTCTAAAAGCTTGTGTT
GTGATTGGTAATAAGGATACAGTAACGACTAATAGCCCTGATAAAGCAAG
cggaaaggttgaagatttttTACGACCAAATTTATCACAGCAGTAGGTAG
CTAATAAAGCTGCTGGAAATTCCACCAGGCTCATAAGTACAAAGTTCAAA
TGCAAAGAGCCTGAGCCCAAGTCACCAGCAGTCATAGTGAGGCCAAAATA
AACGAGTGAGTTTGTgtaaaaacagaaaataaacacAATTGATGTCATTG
CCATTTGTTTAGGTCGGAAAACATCCAATGGGTTGGTAATCTCTTTCTCT
TTGGAGACTGGGGAGAGAGTTACTGTCGGGTCCAGTACCCTCCCATTCCA
TTTAGCCATTCGTTGGAAAATTGCTAAAGCGTCTTTTGTACGACTTTTCA
GCCTCAACCATCTGACAGATTCAGGTACAAATTGATATGTTGCGACGAAT
ACTAAATAAGGTAAAGATCCAGCAACAAAAAGCAATTTCCAGGAACTGAT
GAAATAAGCCTTTAATGGTAGCAAACATAAGGCTACAGCGTAGAACAACC
ATATCAAATTACCGGCAAATGCACGGTGTTTCTCTCCAACAGTTTCAATA
ATCATTACAAAGACATTAGCACCCGGCATAAAAAAACCGGAAAAGAACCG
GAACATGATAAATAAGGACATATTCGGCATCAAACAAGACGCAAAGTTCG
CTATAGTTCCAGCGGTATAACTTATAAACATGAGTTTTTTTCGTCCAAAA
TTGTCGGATACCCATGTTAGTATTACAGCTCCAAATAAAGCGCCAACAAA
AATGATGGAAACAGAGAGACTAATCAGCCATTCACCACCACATGATAAAT
CATATTCAACAACAATTGAATATTCTTTCGGTTGAAGATATTCCCATTCC
GATCTTGGAATATGACAACGAAAATTATTTTCACTCGTAAAAGTTCCATT
TAGTGAACATACTGTACTGTTTTCAGCGCATCTCCATTCTGGTTCGAATG
CGGTGAATGTTAATATGTAGATCACAAAGATGTATGGAATCTCCATCAAT
CCAAAAATGACATTAAGGGTTTTTTGGAACTTTCCATAATCACCGACTAG
GTGTAGAAAGTCGTCAACATTTAGCTcctttttgttttcatgttgcAGAG
CAATTCCTTGCCCCGAATCGTGACTCCTTTTGCGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011118XLOC_011118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019771-proteinTCONS_00019771-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019771-exon-sc0000335-1491911889:276430..278614TCONS_00019771-exon-sc0000335-1491911889:276430..278614Clytia hemisphaericaexon
TCONS_00019771-exon-sc0000335-1510915933:276430..278614TCONS_00019771-exon-sc0000335-1510915933:276430..278614Clytia hemisphaericaexon
TCONS_00019771-exon-sc0000335-1575043694:276430..278614TCONS_00019771-exon-sc0000335-1575043694:276430..278614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:276430..278614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12568	0.140066	0.223617	0.198886	0.0242124	0.0382659	0	0.172881	0.196687	0.187407	0.472944	0.382639	5.43309	5.86553	1.92687	2.47263	3.26173	2.63862	11.8714	9.66643	3.02051	2.76879	1.25575	1.96515	1.46503	1.53116	0.0492379	0.13137	2.0725	2.25367
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
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BLAST of TCONS_00019771 vs. Swiss-Prot (Human)
Match: S22A3 (Solute carrier family 22 member 3 OS=Homo sapiens GN=SLC22A3 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 2.444e-55
Identity = 158/558 (28.32%), Postives = 263/558 (47.13%), Query Frame = 2 
Query:  437 DDFLHLVGDYGKFQKTLNVIFGLMEIPYIFVIYILTFTAFEPE--W-----------RCAE------NSTVCSLNGTFTSENNFRCH---------------------------------IP-RSEWEYLQPKEYSIVVEYDLSCGGEWLISLSVSIIFVGALFGAVILTWVSDNFGRKKLMFISYTAGTIANFASCLMPNMSLXXXXXXXXXXXMPGA--NVFVMIIETVGEKHRAFAGNLIWLFYAVALCLLPLKAYFISSWKLLFVAGSLPYLVFVATYQFVPESVRWLRLKSRTKDALAIFQRMAKWNGRVLDPTVTLSPVSKEKEITNP--LDVFRPKQMAMTSIVFIFCFYTNSLVYFGLTMTAGDLGSGSLHLNFVLMSLVEFPAALLATYCCDKFGRKKSSTFPXXXXXXXXXXXXXXPITTQAFRMVRTITGIFAKLFITMSYDCIATLVVEAYPTNIRSEALGIMGVAATIGGASAPWVAKGLSTLVAELPFYVMGTLGVVAGVSCYLLPETKGTLLRESKIDFQ-LVPTHPPDNDDKEARQREKSHF 1936
            D+ L  VG++G+FQ+ + ++  L  + + F+   + F   +P+  W           RC        N T  +  G    E   RC                                  +P R  W Y Q    +IV E+DL C   W++ L+ +I+ +G L GA  L + +D +GR  +  +S     +        PN  +F++FRF  G F  G     +V++ E VG K R   G +I +F+ + + +LP  AYFI +W+ + +A +LP  +F+  Y  VPES RWL  + +   AL I +R+AK NG+ L    +   V+ E E++NP  LD+ R  QM   +++ +F ++T+++VY GL M  G +G G+L+++F +  +VE P ALL     ++ GR+        ++G+  +  + LP   +    +RT      +L ITM+++ +  +  E YPT +R+  + +       GG  AP++   L+ +  ELP  + G L  + G    LLPETKG  L E+  D + L   H       +     +SH 
Sbjct:    5 DEALQRVGEFGRFQRRVFLLLCLTGVTFAFLFVGVVFLGTQPDHYWCRGPSAAALAERCGWSPEEEWNRTAPASRGPEPPERRGRCQRYLLEAANDSASATSALSCADPLAAFPNRSAPLVPCRGGWRYAQAHS-TIVSEFDLVCVNAWMLDLTQAILNLGFLTGAFTLGYAADRYGRIVIYLLSCLGVGVTGVVVAFAPNFPVFVIFRFLQGVFGKGTWMTCYVIVTEIVGSKQRRIVGIVIQMFFTLGIIILPGIAYFIPNWQGIQLAITLPSFLFLLYYWVVPESPRWLITRKKGDKALQILRRIAKCNGKYLSSNYSEITVTDE-EVSNPSFLDLVRTPQMRKCTLILMFAWFTSAVVYQGLVMRLGIIG-GNLYIDFFISGVVELPGALLILLTIERLGRRLPFAASNIVAGVACLVTAFLP---EGIAWLRTTVATLGRLGITMAFEIVYLVNSELYPTTLRNFGVSLCSGLCDFGGIIAPFLLFRLAAVWLELPLIIFGILASICGGLVMLLPETKGIALPETVDDVEKLGSPHSCKCGRNKKTPVSRSHL 556
The following BLAST results are available for this feature:
BLAST of TCONS_00019771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22A32.444e-5528.32Solute carrier family 22 member 3 OS=Homo sapiens ... [more]
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