|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019761 ID=TCONS_00019761|Name=TCONS_00019761|organism=Clytia hemisphaerica|type=transcript|length=2800bpRun BLAST on NCBI protein sequence of TCONS_00019761-protein >TCONS_00019761-protein ID=TCONS_00019761-protein|Name=TCONS_00019761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp VVYNKKQAQMNDATKNVTLFGVDISRFNKARQFFICTCGIFSFYLLYGYYRun BLAST on NCBI transcript from alignment at sc0000335:290874..298099- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019761 ID=TCONS_00019761|Name=TCONS_00019761|organism=Clytia hemisphaerica|type=transcript|length=7226bp|location=Sequence derived from alignment at sc0000335:290874..298099- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000335:290874..298099- >TCONS_00019761 ID=TCONS_00019761|Name=TCONS_00019761|organism=Clytia hemisphaerica|type=CDS|length=9639bp|location=Sequence derived from alignment at sc0000335:290874..298099- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019761 vs. Swiss-Prot (Human)
Match: S35B3 (Adenosine 3'-phospho 5'-phosphosulfate transporter 2 OS=Homo sapiens GN=SLC35B3 PE=1 SV=1) HSP 1 Score: 402.134 bits (1032), Expect = 2.779e-130 Identity = 201/343 (58.60%), Postives = 251/343 (73.18%), Query Frame = 1
Query: 37 ATKNVTLFGVDISRFNKARQFFICTCGIFSFYLLYGYYQERIFLIPGFKPHGWFLTLVQFAFYTCFSVIESLALSIKLERRIPMKTYFILAFLTVGTMGMSNASVGYLNYPTQVIFKCCKLIPVMIGGILIQGKRYATLDFISCLCMSVGLTLFVLADSAVQPNFNITGIIMMSLALCSDAAIGNVQEKNMKSFKPSNTEVVLYSYGIGFCYMFVILMFTGSLQAGFMYYLKNPLETYGYSLVFSLTGYLGISFVLTFIRLFGALMTVTVTTCRKALTIIISFTVFSKPFTIQYLWSGCIVLLGIFLNVYKKNEQIMNTKILSMIHWLSNKLNSQHYGKMVQQ 1065
+ +V + G+++S+FNK QFFIC G+F FYL+YGY QE IF + GFK GW+LTLVQFAFY+ F +IE L L RRIP KTY I+AFLTVGTMG+SN S+GYLNYPTQVIFKCCKLIPVM+GG+ IQGKRY D + +CMS+GL F LADS PNFN+TG++++SLALC+DA IGNVQEK MK SN+E+VLYSY IGF Y+ + L T L + KNP+ TYGY+ +FSLTGY GISFVL I++FGAL+ VTVTT RKA+TI++SF F+KPFT QY+WSG +V+LGIFLNVY KN M+ L ++ L NK + + Q
Sbjct: 61 SVDDVVVLGMNLSKFNKLTQFFICVAGVFVFYLIYGYLQELIFSVEGFKSCGWYLTLVQFAFYSIFGLIE-LQLIQDKRRRIPGKTYMIIAFLTVGTMGLSNTSLGYLNYPTQVIFKCCKLIPVMLGGVFIQGKRYNVADVSAAICMSLGLIWFTLADSTTAPNFNLTGVVLISLALCADAVIGNVQEKAMKLHNASNSEMVLYSYSIGFVYILLGLTCTSGLGPAVTFCAKNPVRTYGYAFLFSLTGYFGISFVLALIKIFGALIAVTVTTGRKAMTIVLSFIFFAKPFTFQYVWSGLLVVLGIFLNVYSKN---MDKIRLPSLYDLINKSVEARKSRTLAQ 399 The following BLAST results are available for this feature:
BLAST of TCONS_00019761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
