TCONS_00019740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019740
Unique NameTCONS_00019740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019740 ID=TCONS_00019740|Name=TCONS_00019740|organism=Clytia hemisphaerica|type=transcript|length=1219bp
TAAAAATGCTGGTCTTAAGGAatttgtacaattttttttgtgcCCAAAAT
TTAATTAGAACGCGAAAAGAGAAGAGGGGCTTACTAAGTTTTGATATCAG
TTTGTTACATAAATGATTGTTAGCTATGCATGACGCTTCTATAATTGTCG
AGAATTTAATACGCTTTCGATGGAATTTTGCTCAAAAGATGCTGAGATTG
AGGAAACAACATACCATAGCGTCCGATTCTCCATCCAATATCTTTAATGA
AAAGgtACCACAAGTTTGCGTGACTCTTTCGGACGATTCTGATAATTCGG
ACACGGAAGACCGTCATCCATTTGTTGTCGAAAAGGAACATGAACGACTA
CATGGTGAAACAGAAGAGGACGCAGAGATTCGTAAAAATGCAATTGCTAT
GCGATCACGTCGAAGGAGTTCTGTGGTTCAAATACCAACAGCCAGTATAC
AAATGGATTTACACACTATCTACTTAGAAAGTATCAATGGAACCAAAAAG
AAAGggaaatcgTTTGAAGAACCGAAAGCGTCGAACaaaaaacttcagaa
aaatGCAGCTGTTTACAGCTCTTTCGAGGGAGAAGACACGGAGAAAAAAG
GAAGATTCGCCCTACTAAAACAAAAGTTTGTAAGTAAACTAATAATTAAT
TACAAAATTGTACATTTTGGGAAAAATCTGCTAGTGCTTATTTTCGTTTG
ACGGTCAATGCACTCCATTGCAAACATTTTGAACTCTGTGTAATCAAGGT
TCTGATCGCCAGAAACGTCAAACTCGGAGAAAATCTCACGAATAGAGTCG
CCTTGTAGATTGAAAAGAAAACCAAAGTTTTCAAATTCTTCAGCTGATAT
ATTCCCTGATTTATCTTCGTCTAAAAGGTCGAAAACTGTTCGTGAATGGC
GGtaaatgaaatgtttttccTCTCGGTCTTGAACTGAGATTACGATACAA
ATCAAAAGATAAAACTCATTGAAATCAATACTACCCGATCCATCCACGTC
CAACATGTCAAAAACCTTGTAAATTTGTGTTGTGGTCAAATCTGTGATTG
ATTTCAAGAAAGCACAGAACTGAACATCGTTTAAAGCATTGTCCCCATGC
ACATCGAGTagtgtgaaaaaatcataaatcacttTCAAATTTCTTCCTGA
TAATAAACTATagtttttgtcaagatgtataTACTGCAAGAGTTTTGATG
TGACCTTCATCTTTTTGTN
Run BLAST on NCBI

transcript from alignment at sc0000335:169293..178925-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019740 ID=TCONS_00019740|Name=TCONS_00019740|organism=Clytia hemisphaerica|type=transcript|length=9633bp|location=Sequence derived from alignment at sc0000335:169293..178925- (Clytia hemisphaerica)
TAAAAATGCTGGTCTTAAGGAATTTGTACAATTTTTTTTGTGCCCAAAAT
TTAATTAGAACGCGAAAAGAGAAGAGGGGCTTACTAAGTTTTGATATCAG
TTTGTTACATAAATGATTGTTAGCTATGCATGACGCTTCTATAATTGTCG
AGAATTTAATACGCTTTCGATGGAATTTTGCTCAAAAGGTATAGCTCATT
TTATTTTTATGAAACTGCTGTCGTGAAATTATTTCGTACTGATATTTCTT
ATGACTAGCTAAACGGTTGATTCTTGCACTACCATAAAGACAGGTCTCTA
CTTTCATCAGAAATGAATATAAAGAAATTTTAAACGTTTTTGTAAGGTCA
TTGGTCAGAAACAATTCCATTTGGCAAACCTGACGTAACGGTTTGAAAAA
GTTGAACTTCTTTCAACTTTTTATTTTTTAGCTCGAAACTTTTTTAATGA
CGTTATCTTTTCTTCAGGCAAAACGATTGTGACAAATAGTTTTCGCTTAT
TTTTGCGCGAAAGTGGAGACCGGCCTTAATTTTCTCCAAAGTCAGGAATT
GCAAAGTGTCCATTTGTATTTGAAACAGACGTGCTGTACACATAACGGAC
ATAATGCTAATCTTAGAAAAGGATTACAATTAGAGTCTTAGCAATCTGGT
GTGTGAAAAATATTTTGTTGTCCAAAACGATTTCATTTGACATTTTTTCG
ACATTCCTGTTGGTGTTGAGGGTCGTTCTTTTGATTTTTTTGCATCCTTT
CGATTAATACTGTTCAATGCAAGGTGAAGTTCTATAGTCTACTAACCTCA
AATCCTGAGTGTTTTGAGGTAAGAAATGGCTCACTGCACTGACAAGTAGA
AAAGGGTGGCTGTGTTTTTAGTTTTGATTTTGATTGATTTTGTTCCGTAA
ATATCAATGGAAAGGCTAATTTGCAGACTTTTTTACCATTGTGTTGAGTG
CAGCGAAGTCTTGCCTGAAAGTTCATTTAACTTCAAAATTGAACACAATA
CTCATTACAAAATAACAAGAAACAAATTGTTGAAGTGTCTTTATCAGCTC
TCGGAAAATCCTACTCCACCTACTCGCCATTAATTAACATTTCCGAGAAG
CAAAAATATATCGCTCTTCATTACTTCATTTTTGGATTTTATCCAAATTG
AGTAGGAGGAAGTTTAGGTTCTTTTTGGTAAGATAGATGGCCTGAAAAGC
GAATACGGATTACAACTCATGTATGGGGAAATGATCTGCAAAGAATTGAT
TTCACTTGGGATCGTAGGAAAACTAGTAAAGAAGTAAAAAGGTCTCTGAT
AAATTTCACTTGACTTGGAATTGATGGCTCTGAAAAATATTCAGTCTCCA
TAAAATCGGAAAATCTAAAAATTTGACTCAAGCTAGAAATCGAGCCTGGT
AGAGCATCCGTTCAAAATTTCTTGAGCTTCACAGTGTAAAAAGTTAGAAA
ACGCTCTCCCTTTCCCTTGAAACTTAACAAGATTTTGCACCCCTAACATT
ACAATACTATTGTTTTCTTACAATAAATTCTAATTTTTCATGCTTCCATA
TTATAGTTAAATAGTATTATTTGTGAACACAAACCATCATTTATTACCCA
TTAATTCTTTTGTTTTGTATTTCAGATGCTGAGATTGAGGAAACAACATA
CCATAGCGTCCGATTCTCCATCCAATATCTTTAATGAAAAGGTAGTTAAT
CATATGATTCAAACTTCTTTCTTTTCTAATTTTTGTATTTGGCCTTTTGT
TACGAGTCTGCTAAATCGCGTGCCACGCGTGCCAGCGTGCTATGCGTGCC
AGCGTGCCAACGTGCCATGCGTGCCTGCGTGCCAACGTGCCTTGGCGTGC
CAACGTGCCAGCGTGCCAACGTGCCATGGCGTGCCAACGTGCCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCACTTAAATTATGTAAATAATGGCATTATCA
CAAAATATGAGGTGTATACACCAATTTACAACAAGATGTTTTCTCATGCT
CAATAGGATGCTGGCGGTGCAAAGGGATATAGATTGTCATGCAATGAAAA
CATTAAATGCTCCAAGAGAGCTGTTTTAGAGATATGAAAATAGTAGTACT
TTTATTACTGTATTATTTTATTATTTTCATTTTTATGTGAACAGCATTAT
ATAACTTTAAAAGTTTTAAAGAAGATAAACTTGATTCTTCCACGCGAAAG
GCAGTAGTCTACCTGGCATTTTCTTGACAAAGCAAAATCTCATTTTCGGC
TTTATATATAATATATGTTTAGATACTTAGCGTTATGCTTTTTTCTTTAG
CATATTGTAATTTAAGCTGAGGCTGGACATATGCTTAATATGCTTAATTT
TCTATTGTTCTAAAACAATAAATCCATTGTATTCGAGCCAGAATCCCAGC
TTTGTTATGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTGGACTTGGCTATTTTACAAACATGAGAAATAATCATATTGAG
AGTTTTGGACTTTTGAGTTTCACCCTGATATTCTTATAGAAGATATTCTT
ATATAAAAATGCGTTTATCATAAATGATCCAAACAACGTTAAACTACCTC
CAGATGTTATATCATTTTCAGTCGTTTTGAGCAGTTTGGAGTCTTGTACA
GTAGAGTAAACAAGGATGAAGCAACATTGGCTTACTTTCAGGTACCTACC
GGGGGTTGGAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATAA
AATTTTCGAAAAATTAATTATAGCGCCCAGGCTATTAGGTATCTGAGAGT
AGATTTAACGACATAGTAATGATGTTTTTATGTCACGAATAGGTAAGTGT
TTTGTCGTTAAAATCTACTCTCATACGCAGATCTTTTTTCACCCCTGTCT
ACGCTACTGTTCTAAAGAATTGAAAAAGCTTTTCATTCTGAAACCTTTTG
AAAAAGTTTTTTTCTGGAATTTTTTTTTTTGAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACGCTGGCACGCCAAGACAGTTGGCACGAAGGCACGCATGGCACGCTG
GCACGCTTAAAAACCGATGGCACGCTGGCACGCGTGGCACGCGATTTAGC
AGACTCATATGTGAGTGATCGAAGGTTTGGTAATGCTGCTAGTGCCTTCA
AACTTACGTAATCGTGGAGTGTCAAACCATGAACTTATAAACGACTGGAC
ATCTATCTTTTATTGTCTCTTTGAAGCGAGCTTCGTTGCCGCTAGTATTT
CAAAATTTGTATGAAAAATCCGACAATATTCCGTCATAATTTTAATTCTT
TGAATTATTTAGGTAAAAGAATTGACAGAGCTTGAACATTACTCCTAATG
CACAAAAAAATTATTCTTAAATTTTTTCACAAGTTAGCAATATATTTCAT
CAACATTTTTCAACTCCGAAATGCAGAGNTTATTCTTAAATTTTTTCACA
AGTTAGCAATATATTTCATCAACATTTTTCAACTCCGAAATGCAGAGTTT
CAAATGCGTGTATACTTTTGAATCCCTTTTGTCACTCCAATAATTTTTTT
TATGACTTGAAAAAAATAGCTTGCCAAAGTTGAGAGCCTATGTTATAAGA
ATATCAAAATTAGATTGCGACACTCTCTAAAATTATTCGACACTTTTAAG
TCAACATTTAGAAATATTAGCCGGAGTTTTGACAAGCTGACGATGATTTT
GCCTCTGTTATCTTTGTTATGATATAGATAAAAGACTTGAGAAAAGTAGA
GCAACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTATTCCCAAGTGGTATATCATCAAAATTTATTGTTTCA
TTTTATGCTTTTAACGAGGCGGCAACGAAGCTAGCAGCCCTTTCTACAAA
AAAACAAAGGAGATAGATGTCCAGTCGTTTATATGTTCATGGTCAAACCA
AAGCGGTTTTGTTGATGGAATTGTGTTCATAACGAGACTGCCCTGCTTCA
CCTTGAGGTTAAATCATCCACCAGTAATCAAATCTTTTGGCCAGTATAAA
AAAAATCGTCCAAGAAAAAAGATCAGAATGGATTTGAATGATTTCACTTT
TAATATTTTCTTTGTTGGGTTCGTTAAGGCAATCTCGTGCGTGTGTCCTA
ATTTTAGGTTTTGACGAATGACTACCGAAAATAGCTGAATAAAGCTTTTT
CTAGTTTTTGCGGTGAATTTTCCTTACTAAGAATTTCTGGGTATCGATGC
TCGGATAATGACGTCTGATTTGTGTACCTTTGCGTCATTTTGTATGCGGC
AGACTGATGACTCAAATGACAGTAATTAATATGTCTCTGACTTCAATGAG
AACTAATCAGACCCAATTAAAATCCAGTTCCAGTAATTATTTCCGCTTAC
TGAGCGAAAATTTGGTTTTGCATGATTTTAAACATGAGATTGGTGTTTTT
AGAGTATAAAAAAATGCTCTTTGTCATGAGTAGTTAGTTGGCTTTACACT
GTTTTAGGAAGGGTAGCGTTGGTATGCTTTGTATATCAGTTTTCAAGTGG
CTACTTGAGATTTTGTTGAGTTACTACGTAGATTGGATGTCTCCGTGTGT
TTCTGTCCGTGTCTGGGTATTCTCTATTGTTTTCTTATTATGATATAATC
TTTCAGTGAAACTAATACCTAAACTTTTGTCAATTATGATCACAGAATTT
GAAAGGTTTCCACTGAAACCATCATATTCAAATTTCAATCGTCAGTAGTT
TATAAAGTGATGCCCTTCTGTTGACGACAGTTTTTCAAAGTTGTTACGTA
AAAATATTTTTCCTTAAATTATCCGGATATTGATATCAATAAACCACATC
GCTCACTTGATAAAAAAGTGTAATAATTTTATGATTTGATAGCGGTTTAA
AACATTATAACAAAAGTGATAGACGCACAAACATTGACTGGAGCTTCGTT
TGTTTGTAAATTTTGGTAGATTGGTAGATTTTGTTTTGTTTGAAGACACG
ATGGTGTTTGAGGAAAGAGGATTGCGATCGGCAGGTGAATGGGTTATCGG
TGCATTGAAGACGGTTAATGAAACTATGTCACCAAGGTCCAGACGTCGTG
CTTTTAGACGGCAAATGAAAACGGTACTTAGAAACGATTTCGTTGCTAAG
GATTTTTACATGAAATTCCAATCGTTTTTTATCAAACCTTTCCCGTTCCC
GGTTAATTCATTTGTTTTATATTTACACCCCTGTGTCACAGACCTGTTGG
ACCCACACCCCGTTGGAAAGTTTGGAAGTTTGGGAAATTGTCATTTGAAA
TTCAATGGAAAAAATTGCTCTCCAAAACCATCTGAGTTGGATTTTATGAG
CTGGGAAGTGGGTTCTTGTCCAAGAAAAAACACTATTTCGTGCGGTGTGA
TCTGCAGAAGGCTGGATGTCATTTGTGACCATGTTTGATTTTCTNTAACG
TCTGGATGTCATTTGTACCATGTTTGATCTACCAACAACTGTTTAAAACT
TTTTCCTTTTTTCACCAGGTACCACAAGTTTGCGTGACTCTTTCGGACGA
TTCTGATAATTCGGACACGGAAGACCGTCATCCATTTGTTGTCGAAAAGG
AACATGAACGACTACATGTAAGAGATCCACTCTTTATTTTATTTCAACAT
GTCTCGATGAAGTCTGAAAAACAACCTTTGCCTTTGTAAACACCTCCGCC
ACTGCTTACTCCGCCCCGGGCTAACCACCGTTTTCAAATATATCCCGCCT
CCTGAACTATTCTCTTTTTAGCGATCTTGTGTAGACCCCTTGTATTCACC
CCAAAGAAATCATTTTTGGCCGCGTACCATGGTGTTGTTTCTTCTAAGAT
TAGCTGGCAGTATAACAATATAATTCAATATAAAGATCATCTTGGTCAAA
TATTCACTTTGATCTATGAGTTTTTTTATGATGTTTATGATTTTTTGTCT
TTAGGGTGAAACAGAAGAGGACGCAGAGATTCGTAAAAATGCAATTGCTA
TGCGATCACGTCGAAGGAGTTCTGTGGTTCAAATACCAACAGCCAGTATA
CAAATGGATTTACACACTATCTACTTAGAAAGTATCAATGGAACCAAAAA
GAAAGGTCAGATTTAAAATGTTTTAGAAAAATTTGATATTATATGTATTT
CATATATATAGGGCAAGTAAAAAAAAATCCGAAAGTTACGTTACAAAGTT
AATTTGAAAAGTAGATGGTAATTATTTCAATGGGTGTGAATCATGTTAAA
TTTTCTCAAACCATTGGGCATTCTCTATCAGAGCATTCTCATTCCCTTCC
TAGTGATGTGATATGGGGTTGTGGATCGGGTGTGGATACGTCTAAATATA
CATGGCCCATCTTATACTAATACAATAATGACCGGTTAGTGAGGGCTGTA
CTGAGAAATATTGCCCGAGGTCAAATAACGACCGAGCTTGCGAGGTTGTT
GCGTTGACCGAGGGCAATATTTTCAATACAGCCCGAAAAACCGGTCATTA
TTATATTTGTTAATCGTTTCCTTCAGCTTCGATTGATTTTTTAGCGCTTT
ATCTAGGAAAAATAGCGAAATAAAGCGAAAAACAAGCGAAAAGAGATAAG
AAATTGTTATAATTTCTGACGTCAGAAATAAAAAATGAGAGAAATGATGT
CAACGCATTGTTCATTTTCCTTTGAAAAAAATGAATTTTCCTAACGACGG
GCAACTCTGGGCAGTGAAGGCCCGTCGTCATGCGAAAAGAACCAATTCCA
TTGCGCAAAAAGCCGTGTAGCCCGCTTTGAAAAAGTAGCCGGTTAACAAC
GTTCCATTTAATATGAAAGATTTTTTTACAGGGAAATCGTTTGAAGAACC
GAAAGCGTCGAACAAAAAACTTCAGAAAAATGCAGCTGTTTACAGCTCTT
TCGAGGGAGAAGGTACGTCTTGCACAGTGGAGTCTCCATAACTCGAACAC
ACACGTGGAACACAAATTTGTTCGAGTTAAGGAAGTATCGAGTTATGGAG
TAAGGTTTATTAAGGCCTTGTTAACTAAAAGGAAACTGAAACTTGTTTTA
GTTTAAGGAGACATTCGAGCTATAGAGGTTCGAGTTAACGAGTTTCTATA
GTATTACACAAATTTTTAAACCAAATGAGTTTAGTTTTGGCTCATAATTC
TACTATCTATTGCAGGGTAAGAAATTTTGCGAAGGGGGACCGACCTTGAA
GAAAATAACTCTTTTTTTCATTAATATTCTTTTCCTTCTTTTTTCACAGA
CACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAAAAGTTTGTAAGTA
AACTAATAATTAATTACAAAATTGTACATTTTGGGAAAAATCTGCTAGTG
CTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAAACATTTTGAACTC
TGTGTAATCAAGGTTCTGATCGCCAGAAACGTCAAACTCGGAGAAAATCT
CACGAATAGAGTCGCCTTGTAGATTGAAAAGAAAACCAAAGTTTTCAAAT
TCTTCAGCTGATATATTCCCTGATTTATCTTCGTCTAAAAGGTCGAAAAC
TGTTCGTGAATGGCGGTAAATGAAATGTTTTTCCTCTCGGTCTTGAACTG
AGATTACGATACAAATCAAAAGATAAAACTCATTGAAATCAATACTACCC
GATCCATCCACGTCCAACATGTCAAAAACCTTGTAAATTTGTGTTGTGGT
CAAATCTGTGATTGATTTCAAGAAAGCACAGAACTGAACATCGTTTAAAG
CATTGTCCCCATGCACATCGAGTAGTGTGAAAAAATCATAAATCACTTTC
AAATTTCTTCCTGATAATAAACTATAGTTTTTGTCAAGATGTATATACTG
CAAGAGTTTTGATGTGACCTTCATCTTTTTGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011104XLOC_011104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019740-exon-sc0000335-1575043694:178738..178925TCONS_00019740-exon-sc0000335-1575043694:178738..178925Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1575043694:177235..177300TCONS_00019740-exon-sc0000335-1575043694:177235..177300Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1575043694:171559..171657TCONS_00019740-exon-sc0000335-1575043694:171559..171657Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1575043694:171071..171221TCONS_00019740-exon-sc0000335-1575043694:171071..171221Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1575043694:170264..170344TCONS_00019740-exon-sc0000335-1575043694:170264..170344Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1575043694:169293..169926TCONS_00019740-exon-sc0000335-1575043694:169293..169926Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:178738..178925TCONS_00019740-exon-sc0000335-1510915933:178738..178925Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:177235..177300TCONS_00019740-exon-sc0000335-1510915933:177235..177300Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:171559..171657TCONS_00019740-exon-sc0000335-1510915933:171559..171657Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:171071..171221TCONS_00019740-exon-sc0000335-1510915933:171071..171221Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:170264..170344TCONS_00019740-exon-sc0000335-1510915933:170264..170344Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1510915933:169293..169926TCONS_00019740-exon-sc0000335-1510915933:169293..169926Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:178738..178925TCONS_00019740-exon-sc0000335-1491911889:178738..178925Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:177235..177300TCONS_00019740-exon-sc0000335-1491911889:177235..177300Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:171559..171657TCONS_00019740-exon-sc0000335-1491911889:171559..171657Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:171071..171221TCONS_00019740-exon-sc0000335-1491911889:171071..171221Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:170264..170344TCONS_00019740-exon-sc0000335-1491911889:170264..170344Clytia hemisphaericaexon
TCONS_00019740-exon-sc0000335-1491911889:169293..169926TCONS_00019740-exon-sc0000335-1491911889:169293..169926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:169293..178925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.206822	1.43601	1.67139	0.175657	0.319453	0.320419	0.0964634	0	0	0.266012	0	0	0	0	0.880476	0	0	0	0
Blast
[Close]
BLAST of TCONS_00019740 vs. Swiss-Prot (Human)
Match: EFCB9 (EF-hand calcium-binding domain-containing protein 9 OS=Homo sapiens GN=EFCAB9 PE=4 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.237e-41
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = -1 
Query:  692 LQYIHLDKNYSLLSGRNLKVIYDFFTLLDVHGDNALNDVQFCAFLKSITDLTTTQIYKVFDMLDVDGSGSIDFNEFYLLICIVISVQDREEKHFIYRHSRTVFDLLDEDKSGNISAXXXXXXXXXXXLQGDSIREIFSEFDVSGDQNLDYTEFKMFAMECIDRQTK 1189
            L Y++LDK Y LLS RN+K + ++F +LDVHG N LNDV F  FL  +TDL   QI  VFDMLD +  G IDF +FY+L+C++++ Q+  E  F+YRHSR VFDLLD      I A+ FE + FLFN+Q   ++++F +FD++GD  L+Y EFK++ +   D+  K
Sbjct:    9 LWYLYLDKIYCLLSVRNVKALAEYFHILDVHGKNTLNDVLFYHFLHHVTDLKKAQINIVFDMLDWNAVGEIDFEKFYMLVCMLLAHQNHLEGQFMYRHSRPVFDLLDLKGDLRIGAKNFEMYRFLFNIQKQELKDLFRDFDITGDNRLNYQEFKLYTIIYTDKLQK 174
The following BLAST results are available for this feature:
BLAST of TCONS_00019740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFCB91.237e-4148.19EF-hand calcium-binding domain-containing protein ... [more]
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