TCONS_00019739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019739
Unique NameTCONS_00019739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019739 ID=TCONS_00019739|Name=TCONS_00019739|organism=Clytia hemisphaerica|type=transcript|length=1196bp
CGGTTTAAAACATTATAACAAAAGTGATAGACGCACAAACATTGACTGGA
GCTTCGTTTGTTTGTAAATTTTGGTAGATTGgtagattttgttttgtttg
aagACACGATGGTGTTTGAGGAAAGAGGATTGCGATCGGCAGGTGAATGG
GTTATCGGTGCATTGAAGACGGTTAATGAAACTATGTCACCAAGGTCCAG
ACGTCGTGCTTTTAGACGGCAAATGAAAACGgtACCACAAGTTTGCGTGA
CTCTTTCGGACGATTCTGATAATTCGGACACGGAAGACCGTCATCCATTT
GTTGTCGAAAAGGAACATGAACGACTACATGGTGAAACAGAAGAGGACGC
AGAGATTCGTAAAAATGCAATTGCTATGCGATCACGTCGAAGGAGTTCTG
TGGTTCAAATACCAACAGCCAGTATACAAATGGATTTACACACTATCTAC
TTAGAAAGTATCAATGGAACCAAAAAGAAAGggaaatcgTTTGAAGAACC
GAAAGCGTCGAACaaaaaacttcagaaaaatGCAGCTGTTTACAGCTCTT
TCGAGGGAGAAGACACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAA
AAGTTTGTAAGTAAACTAATAATTAATTACAAAATTGTACATTTTGGGAA
AAATCTGCTAGTGCTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAA
ACATTTTGAACTCTGTGTAATCAAGGTTCTGATCGCCAGAAACGTCAAAC
TCGGAGAAAATCTCACGAATAGAGTCGCCTTGTAGATTGAAAAGAAAACC
AAAGTTTTCAAATTCTTCAGCTGATATATTCCCTGATTTATCTTCGTCTA
AAAGGTCGAAAACTGTTCGTGAATGGCGGtaaatgaaatgtttttccTCT
CGGTCTTGAACTGAGATTACGATACAAATCAAAAGATAAAACTCATTGAA
ATCAATACTACCCGATCCATCCACGTCCAACATGTCAAAAACCTTGTAAA
TTTGTGTTGTGGTCAAATCTGTGATTGATTTCAAGAAAGCACAGAACTGA
ACATCGTTTAAAGCATTGTCCCCATGCACATCGAGTagtgtgaaaaaatc
ataaatcacttTCAAATTTCTTCCTGATAATAAACTATagtttttgtcaa
gatgtataTACTGCAAGAGTTTTGATGTGACCTTCATCTTTTTGTN
Run BLAST on NCBI

transcript from alignment at sc0000335:169293..172283-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019739 ID=TCONS_00019739|Name=TCONS_00019739|organism=Clytia hemisphaerica|type=transcript|length=2991bp|location=Sequence derived from alignment at sc0000335:169293..172283- (Clytia hemisphaerica)
CGGTTTAAAACATTATAACAAAAGTGATAGACGCACAAACATTGACTGGA
GCTTCGTTTGTTTGTAAATTTTGGTAGATTGGTAGATTTTGTTTTGTTTG
AAGACACGATGGTGTTTGAGGAAAGAGGATTGCGATCGGCAGGTGAATGG
GTTATCGGTGCATTGAAGACGGTTAATGAAACTATGTCACCAAGGTCCAG
ACGTCGTGCTTTTAGACGGCAAATGAAAACGGTACTTAGAAACGATTTCG
TTGCTAAGGATTTTTACATGAAATTCCAATCGTTTTTTATCAAACCTTTC
CCGTTCCCGGTTAATTCATTTGTTTTATATTTACACCCCTGTGTCACAGA
CCTGTTGGACCCACACCCCGTTGGAAAGTTTGGAAGTTTGGGAAATTGTC
ATTTGAAATTCAATGGAAAAAATTGCTCTCCAAAACCATCTGAGTTGGAT
TTTATGAGCTGGGAAGTGGGTTCTTGTCCAAGAAAAAACACTATTTCGTG
CGGTGTGATCTGCAGAAGGCTGGATGTCATTTGTGACCATGTTTGATTTT
CTNTAACGTCTGGATGTCATTTGTACCATGTTTGATCTACCAACAACTGT
TTAAAACTTTTTCCTTTTTTCACCAGGTACCACAAGTTTGCGTGACTCTT
TCGGACGATTCTGATAATTCGGACACGGAAGACCGTCATCCATTTGTTGT
CGAAAAGGAACATGAACGACTACATGTAAGAGATCCACTCTTTATTTTAT
TTCAACATGTCTCGATGAAGTCTGAAAAACAACCTTTGCCTTTGTAAACA
CCTCCGCCACTGCTTACTCCGCCCCGGGCTAACCACCGTTTTCAAATATA
TCCCGCCTCCTGAACTATTCTCTTTTTAGCGATCTTGTGTAGACCCCTTG
TATTCACCCCAAAGAAATCATTTTTGGCCGCGTACCATGGTGTTGTTTCT
TCTAAGATTAGCTGGCAGTATAACAATATAATTCAATATAAAGATCATCT
TGGTCAAATATTCACTTTGATCTATGAGTTTTTTTATGATGTTTATGATT
TTTTGTCTTTAGGGTGAAACAGAAGAGGACGCAGAGATTCGTAAAAATGC
AATTGCTATGCGATCACGTCGAAGGAGTTCTGTGGTTCAAATACCAACAG
CCAGTATACAAATGGATTTACACACTATCTACTTAGAAAGTATCAATGGA
ACCAAAAAGAAAGGTCAGATTTAAAATGTTTTAGAAAAATTTGATATTAT
ATGTATTTCATATATATAGGGCAAGTAAAAAAAAATCCGAAAGTTACGTT
ACAAAGTTAATTTGAAAAGTAGATGGTAATTATTTCAATGGGTGTGAATC
ATGTTAAATTTTCTCAAACCATTGGGCATTCTCTATCAGAGCATTCTCAT
TCCCTTCCTAGTGATGTGATATGGGGTTGTGGATCGGGTGTGGATACGTC
TAAATATACATGGCCCATCTTATACTAATACAATAATGACCGGTTAGTGA
GGGCTGTACTGAGAAATATTGCCCGAGGTCAAATAACGACCGAGCTTGCG
AGGTTGTTGCGTTGACCGAGGGCAATATTTTCAATACAGCCCGAAAAACC
GGTCATTATTATATTTGTTAATCGTTTCCTTCAGCTTCGATTGATTTTTT
AGCGCTTTATCTAGGAAAAATAGCGAAATAAAGCGAAAAACAAGCGAAAA
GAGATAAGAAATTGTTATAATTTCTGACGTCAGAAATAAAAAATGAGAGA
AATGATGTCAACGCATTGTTCATTTTCCTTTGAAAAAAATGAATTTTCCT
AACGACGGGCAACTCTGGGCAGTGAAGGCCCGTCGTCATGCGAAAAGAAC
CAATTCCATTGCGCAAAAAGCCGTGTAGCCCGCTTTGAAAAAGTAGCCGG
TTAACAACGTTCCATTTAATATGAAAGATTTTTTTACAGGGAAATCGTTT
GAAGAACCGAAAGCGTCGAACAAAAAACTTCAGAAAAATGCAGCTGTTTA
CAGCTCTTTCGAGGGAGAAGGTACGTCTTGCACAGTGGAGTCTCCATAAC
TCGAACACACACGTGGAACACAAATTTGTTCGAGTTAAGGAAGTATCGAG
TTATGGAGTAAGGTTTATTAAGGCCTTGTTAACTAAAAGGAAACTGAAAC
TTGTTTTAGTTTAAGGAGACATTCGAGCTATAGAGGTTCGAGTTAACGAG
TTTCTATAGTATTACACAAATTTTTAAACCAAATGAGTTTAGTTTTGGCT
CATAATTCTACTATCTATTGCAGGGTAAGAAATTTTGCGAAGGGGGACCG
ACCTTGAAGAAAATAACTCTTTTTTTCATTAATATTCTTTTCCTTCTTTT
TTCACAGACACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAAAAGTT
TGTAAGTAAACTAATAATTAATTACAAAATTGTACATTTTGGGAAAAATC
TGCTAGTGCTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAAACATT
TTGAACTCTGTGTAATCAAGGTTCTGATCGCCAGAAACGTCAAACTCGGA
GAAAATCTCACGAATAGAGTCGCCTTGTAGATTGAAAAGAAAACCAAAGT
TTTCAAATTCTTCAGCTGATATATTCCCTGATTTATCTTCGTCTAAAAGG
TCGAAAACTGTTCGTGAATGGCGGTAAATGAAATGTTTTTCCTCTCGGTC
TTGAACTGAGATTACGATACAAATCAAAAGATAAAACTCATTGAAATCAA
TACTACCCGATCCATCCACGTCCAACATGTCAAAAACCTTGTAAATTTGT
GTTGTGGTCAAATCTGTGATTGATTTCAAGAAAGCACAGAACTGAACATC
GTTTAAAGCATTGTCCCCATGCACATCGAGTAGTGTGAAAAAATCATAAA
TCACTTTCAAATTTCTTCCTGATAATAAACTATAGTTTTTGTCAAGATGT
ATATACTGCAAGAGTTTTGATGTGACCTTCATCTTTTTGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011104XLOC_011104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019739-exon-sc0000335-1575043694:172053..172283TCONS_00019739-exon-sc0000335-1575043694:172053..172283Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1575043694:171559..171657TCONS_00019739-exon-sc0000335-1575043694:171559..171657Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1575043694:171071..171221TCONS_00019739-exon-sc0000335-1575043694:171071..171221Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1575043694:170264..170344TCONS_00019739-exon-sc0000335-1575043694:170264..170344Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1575043694:169293..169926TCONS_00019739-exon-sc0000335-1575043694:169293..169926Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1510915933:172053..172283TCONS_00019739-exon-sc0000335-1510915933:172053..172283Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1510915933:171559..171657TCONS_00019739-exon-sc0000335-1510915933:171559..171657Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1510915933:171071..171221TCONS_00019739-exon-sc0000335-1510915933:171071..171221Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1510915933:170264..170344TCONS_00019739-exon-sc0000335-1510915933:170264..170344Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1510915933:169293..169926TCONS_00019739-exon-sc0000335-1510915933:169293..169926Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1491911889:172053..172283TCONS_00019739-exon-sc0000335-1491911889:172053..172283Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1491911889:171559..171657TCONS_00019739-exon-sc0000335-1491911889:171559..171657Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1491911889:171071..171221TCONS_00019739-exon-sc0000335-1491911889:171071..171221Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1491911889:170264..170344TCONS_00019739-exon-sc0000335-1491911889:170264..170344Clytia hemisphaericaexon
TCONS_00019739-exon-sc0000335-1491911889:169293..169926TCONS_00019739-exon-sc0000335-1491911889:169293..169926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:169293..172283 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21781	0.0791992	0.0864752	0.260532	0	0	0	0	0.123666	0	0	0	3.31427	1.14245	1.86544	6.28355	2.09376	1.73257	1.4262	1.05979	1.17984	1.20902	1.79718	2.7243	6.31019	5.23983	1.19503	1.07933	0.715644	0.418281
Blast
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BLAST of TCONS_00019739 vs. Swiss-Prot (Human)
Match: EFCB9 (EF-hand calcium-binding domain-containing protein 9 OS=Homo sapiens GN=EFCAB9 PE=4 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.073e-41
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = -1 
Query:  669 LQYIHLDKNYSLLSGRNLKVIYDFFTLLDVHGDNALNDVQFCAFLKSITDLTTTQIYKVFDMLDVDGSGSIDFNEFYLLICIVISVQDREEKHFIYRHSRTVFDLLDEDKSGNISAXXXXXXXXXXXLQGDSIREIFSEFDVSGDQNLDYTEFKMFAMECIDRQTK 1166
            L Y++LDK Y LLS RN+K + ++F +LDVHG N LNDV F  FL  +TDL   QI  VFDMLD +  G IDF +FY+L+C++++ Q+  E  F+YRHSR VFDLLD      I A+ FE + FLFN+Q   ++++F +FD++GD  L+Y EFK++ +   D+  K
Sbjct:    9 LWYLYLDKIYCLLSVRNVKALAEYFHILDVHGKNTLNDVLFYHFLHHVTDLKKAQINIVFDMLDWNAVGEIDFEKFYMLVCMLLAHQNHLEGQFMYRHSRPVFDLLDLKGDLRIGAKNFEMYRFLFNIQKQELKDLFRDFDITGDNRLNYQEFKLYTIIYTDKLQK 174
The following BLAST results are available for this feature:
BLAST of TCONS_00019739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFCB91.073e-4148.19EF-hand calcium-binding domain-containing protein ... [more]
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