TCONS_00019737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019737
Unique NameTCONS_00019737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019737 ID=TCONS_00019737|Name=TCONS_00019737|organism=Clytia hemisphaerica|type=transcript|length=1093bp
GTTGGCATCTTGCCTAGACAACACCAGAGACTCAATCACAATGACGAGCA
TGAAGACTTCAACAGTAGTTCTTGCTATTCTGTCAGTGATCTTTGCTGTT
CAAGGAGACCTTCCAACATCATCAACAGGCCCTTCGTGTCCAAGCACATT
ATGCCAAGGAAAATCAAATGGTGCACTATTCAGGCTGAGTGAGAATTTCC
CAAATTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGACCATGT
CCACCGAAAACAGTTTTTGATAATGCTGTAAGAGTTTGTGTATGGGCATC
TGCCACAAATAACAATGGTATTTACAACCCATTTCATCATGGCAAAAAAC
CTCAACAGGCTTCAACAACAACCACCAAAAGACCACATCatccaacaaca
aaacaaacgaCAACCACAACGACAACGACGACACCGACACCGACAACCAC
AACGACAACGACGACACCGACAACCACAACGACAACGACGACACCGACGA
CAACGACTAGCACTACACCAAGTACAACAACAACTCAAACAACGAAAGCT
CACGACCCCTATCATAAGATCAAACCGCACCATCCTGTAACAACGAAGAA
ACCGTACGACCCTTATCATAATATGAAGCCACAACATCCAGCAACAACAA
AAAATCCTCACGATCCTTACCACATGGTTAAACCTCATCATCCTAAACCA
CACCACCCTCACGATCAGTACAACCCATATATGATGAAAACTACGACGAC
TTCAACTACCCCGACAAAAACTACAACGACGACAAAAGTTACAACGACAA
CTAAGAGACCACACAACCCTTACCATGGAATACATCATCCAAACCCATTC
AACATCTACCACCCTGTGTACGTTGGTATTCATCCTAACAACCCTTACCA
CCCTTTCCACCCGTTCCCAACAAAGAAACCGTATCCAACTGCACCTACAA
CTCGTTATACCAACCCTACGACCAAATCAACGACTACACACTATACTCAT
CCAACAACAACCTCTACAATTACAACTCATCCCACTAAACCAACAACTCA
TCCAACAGCTCACCCAACAACTCATCCTACAACTCACCCAACA
Run BLAST on NCBI

transcript from alignment at sc0000335:265725..269067+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019737 ID=TCONS_00019737|Name=TCONS_00019737|organism=Clytia hemisphaerica|type=transcript|length=3343bp|location=Sequence derived from alignment at sc0000335:265725..269067+ (Clytia hemisphaerica)
GTTGGCATCTTGCCTAGACAACACCAGAGACTCAATCACAATGACGAGCA
TGAAGACTTCAACAGTAGTTCTTGCTATTCTGTCAGGTATGTAACAGTTT
TTCTTTGTCACACCCCTGTATCAAATAAAAGAGGTAAATGACAATAGCGC
GATGAAAAACGCCTTTTTAATGGGTGGGAATTTCAAACTTCATATTTCCA
GCTCGGAAATCAAGTAGAGCGATACTCAAAATTACAGCATATGTCGCAAT
GGGAAAGAGTAGTTTTCCAATGAGTGAAATTCTGTAGTATTAGTCTGAGG
GATTTTGGGTTTTTTTTGACTGGACCCAAAATTTGCATCCACatggaatt
ttttgattgaaatgagtTCATTAGGTCCCTAGGAGTGAAAAACCGTTGAG
TGCCACTTTTCTCACCTTGGGCATTTCGCATAATGGTGGGAATGGTCCCA
TTATGACTTTTCCAATGGGTAATCGAGGGTTCAAATCGGGAAAAATAGAA
AGGAAGTACTCTCCGGGTTGTTTGAGTTTAAAATTTACGAGATAATTATT
TATTTTGGTTGATGTGTGCCATCATACGCAAAACAAAGAATCTCATCCAA
GACACACTTAttttaacttaattttttcatttttatgtagTGATCTTTGC
TGTTCAAGGAGACCTTCCAACATCATCAACAGGCCCTTCATGTAAGTAAA
TTACCCCACACGttatcttttataagaacatccaaaacttttgaagcctt
cggatgttcttaactttttgagtatttttgtcaattttcctaagaaatcg
ggtgttttagagtccagaAAGCCTTAGaattttcttaatttgttcttaat
attttgaccatcgaagtcttatgttcttatatagtttgctctgataaaaa
acatgtataacgctaaaatgtaaaattttacatattttttgtaATGAGAA
TGTTTACCTATCCATGCTCATATTCATATTCCAGGTCCAAGCACATTTTG
CCAAGGAAAATCAAATGGTGCATTATTCAGGCTGAGTGAGAATTTCCCAA
ATTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGGCCATGTCCA
CCGAAAACAGTTTTTGATAATGTTGTAAGAGTTTGTGTATGGGCATCTCC
CACAAATAACAATGGTCTTTACAACCCATTCCATCATGGCAAAAAACCTC
AACAAGCTTCAACAACGACCACCAAAAGACCACATCatccaacaacaaaa
caaacgaCAACCACAACGACAACAACGACACCGACAACCACAACCACAAC
GACGACACCGACGACAACGACTAGCACAACACCAAGTACAACAACAATTC
AAACAACGACGACAACGAAAGCTCACGACCCCTATCACAAGATCAAACCG
CACCATCCTGCAACAACGAAGAAACCGTACGACCCTTATCATAATATGAA
GCCACAACATCCGATAACAACAAAAAAGCCTCACGATCCTTACCACATGG
TTAAACCTCATNATTTTTAATGGGTGGGAATTTCAAACTTTATTATTTCC
AGCTCGGAAATCAATTAGAGCGATACTCAAAATTACAGCATATGTCGCAA
TGGGAAAGAGTAGTTTTCCAATGAGTGAAACTCTATAGTAATAGTCTGAG
GGATTTTGGGTTTTTTTTGACTGGACCCAAAATTTGCGTCcacatgaaat
tttttgattgaaatgagtTCATTAGCTCCCTAGGAGGGAAAAACCGTTGA
GTGCCACTTTTCTCACCTTGGGCATTTCCCATAATGGTGGGAATGGTCCC
ATAATGACTTTTCCAATGAGTAATCGAGGGTTCAAATCGGGAAAAATAGA
AAGGAAGTACTCTCCGGGTTGTTTGAGTCTAAAATTTACGAGATAATTAT
TTATTTTGGTTGATGTGTGCCATCATACGCAAAACAAAGAATCTCATCCA
AGACACACTTAttctaaattaattttttcatttttatgtagTGATCTTTG
CTGTTCAAGGAGACCTTCCAACATCATCAACAGGCCCTTCGTGTAAGTAA
ATTACCCCACACGCTAtctttaataagaacatccaacatttttggagcct
tcggatgttcttaactttttgagttttaagcctggaaatgttcttaatat
gttcttattttcaccattttttgagtatttttgtcaattttcctaagaaa
tcgggtgttttagagtccggaaagccttagaatgttcttaacttgttctt
aatattttgaccatcgaagtcttatgttcttatatagtttgctcttataa
aaaacgtgtataacgctaaaatgtaaaattttacatattttttgtaATGA
GAATGTTTACCTATTCATGCTCATATTCATGTTACAGGTCCAAGCACATT
ATGCCAAGGAAAATCAAATGGTGCACTATTCAGGCTGAGTGAGAATTTCC
CAAATTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGACCATGT
CCACCGAAAACAGTTTTTGATAATGCTGTAAGAGTTTGTGTATGGGCATC
TGCCACAAATAACAATGGTATTTACAACCCATTTCATCATGGCAAAAAAC
CTCAACAGGCTTCAACAACAACCACCAAAAGACCACATCatccaacaaca
aaacaaacgaCAACCACAACGACAACGACGACACCGACACCGACAACCAC
AACGACAACGACGACACCGACAACCACAACGACAACGACGACACCGACGA
CAACGACTAGCACTACACCAAGTACAACAACAACTCAAACAACGAAAGCT
CACGACCCCTATCATAAGATCAAACCGCACCATCCTGTAACAACGAAGAA
ACCGTACGACCCTTATCATAATATGAAGCCACAACATCCAGCAACAACAA
AAAATCCTCACGATCCTTACCACATGGTTAAACCTCATCATCCTAAACCA
CACCACCCTCACGATCAGTACAACCCATATATGATGAAAACTACGACGAC
TTCAACTACCCCGACAAAAACTACAACGACGACAAAAGTTACAACGACAA
CTAAGAGACCACACAACCCTTACCATGGAATACATCATCCAAACCCATTC
AACATCTACCACCCTGTGTACGTTGGTATTCATCCTAACAACCCTTACCA
CCCTTTCCACCCGTTCCCAACAAAGAAACCGTATCCAACTGCACCTACAA
CTCGTTATACCAACCCTACGACCAAATCAACGACTACACACTATACTCAT
CCAACAACAACCTCTACAATTACAACTCATCCCACTAAACCAACAACTCA
TCCAACAGCTCACCCAACAACTCATCCTACAACTCACCCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011102XLOC_011102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019737-exon-sc0000335-1491911889:265725..265810TCONS_00019737-exon-sc0000335-1491911889:265725..265810Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1510915933:265725..265810TCONS_00019737-exon-sc0000335-1510915933:265725..265810Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1575043694:265725..265810TCONS_00019737-exon-sc0000335-1575043694:265725..265810Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1491911889:267716..267766TCONS_00019737-exon-sc0000335-1491911889:267716..267766Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1510915933:267716..267766TCONS_00019737-exon-sc0000335-1510915933:267716..267766Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1575043694:267716..267766TCONS_00019737-exon-sc0000335-1575043694:267716..267766Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1491911889:268112..269067TCONS_00019737-exon-sc0000335-1491911889:268112..269067Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1510915933:268112..269067TCONS_00019737-exon-sc0000335-1510915933:268112..269067Clytia hemisphaericaexon
TCONS_00019737-exon-sc0000335-1575043694:268112..269067TCONS_00019737-exon-sc0000335-1575043694:268112..269067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:265725..269067 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00685201	0.0969126	0.0908817	0	0	0.0258973	0	0	0.00713816	0.0253663	0.325282	0	0.436989	0	0	0.0172982	1.04779	0.103185	0	0.0135387	0.19874	0	0.0460159	0.00634354	0.102336	0.174257	0	0	0.122785	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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