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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019731 ID=TCONS_00019731|Name=TCONS_00019731|organism=Clytia hemisphaerica|type=transcript|length=2949bpRun BLAST on NCBI protein sequence of TCONS_00019731-protein >TCONS_00019731-protein ID=TCONS_00019731-protein|Name=TCONS_00019731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=793bp MEDPGEIASENTSMSSISLTSDDVDIVNKQKRKKVEFSKHQPVGIFTRLGRun BLAST on NCBI transcript from alignment at sc0000335:148786..158503+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019731 ID=TCONS_00019731|Name=TCONS_00019731|organism=Clytia hemisphaerica|type=transcript|length=9718bp|location=Sequence derived from alignment at sc0000335:148786..158503+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000335:148786..158503+ >TCONS_00019731 ID=TCONS_00019731|Name=TCONS_00019731|organism=Clytia hemisphaerica|type=CDS|length=38112bp|location=Sequence derived from alignment at sc0000335:148786..158503+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019731 vs. Swiss-Prot (Human)
Match: PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1) HSP 1 Score: 486.493 bits (1251), Expect = 8.912e-157 Identity = 267/697 (38.31%), Postives = 440/697 (63.13%), Query Frame = 2
Query: 329 RLGRGIRGLWRTTATEGISKEDDRDTYVRMTLSELMVYLIYLITLCLMGFLMLDGTMFQFTRVMKGLFIDDPG-----FDGINTVPGVWNYLQNNLVDGLFWEKYYDGSDVHHSEIGYIFFENKLMGRTRLRQLRVQEDSCNVDPIMDPVMEGCYTHYHPDVEKKTQFGILNDTAYNNSAWKFSSEEELQGRGFTGRLATYPGGGYWRELSDNKRESKKMIKDLFEKSWIDRGTRALFVEFAVYNANLNLFSIGTLLFEFPATGAVLNIYRFSTLKLLRYVTTTDYFVMGLEGLLFLMCLYYTIEEIIEVKNHGLSHFKGVWNVVDVIILILTYGCLALNLYRTFSVNSTLTSILRTRDEFARFSLVTQWQELFNDLIAVTLFLAWMKVFKYISFNQTMAELENTLITCAKDVLGFTFMFMIIFFAYAQWGFAIFGAQVKSFSSVGVAMMTLFRMILGDFDFMEIYTAKPGWGPFYFISYIXXXXXXXXXXXXAIVNDTYAEVKEEM--DEEPFDVGGYFKEGINKAMSKLSNKRDQIVDLKDVLRNADTNGDNEIEFDEWRTHLKKMGHADFEI---EALFDKFDTDGDRILNEEEVARMKXXXXXXXXXXXXXXXXINKMEKTTKHMLSKLMLRXXXXXXXXXXXXXXXXXXXXKYISSEEFKMLMKRVDQSEESVGNIVNKMDDILNKLETMDK 2389
+ +GIRGLW TT TE + ++R+ Y++ TL EL+VY+++L+ +CL+ + M + + +T+VM LF+ P F I+++ W++ Q L+D L+W K+Y+ + H +I++EN L+G RLRQL+V+ DSC V + CY Y PD E++ FG +N +AW + S++EL G GRL +Y GGGY+ +L +++ S + ++ L E W+DRGTR +F++F+VYNAN+NLF + L+ EFPATG + ++ T+KL+RYV+ D+F++G E + + YY +EEI+E+ H L + +WN++D+++++L+ + +++RT VN + +L+ + +A F + WQ +N++ AV LF AW+K+FKYISFN+TM +L +TL CAKD+LGF MF I+FFAYAQ G+ +FG QV++FS+ + T FR+ILGDFD+ I A GP YF++Y+F VFF LLNMFLAI+NDTY+EVKEE+ ++ + K+G NK + +L +++++ D++ VL+ G+ EI+F+++ L+++GHA+ EI A F KFD DG+RIL+E+E +M+++LEE+ + ++EK + ++S + E+ ++S EEF ML +RV Q E + +V+++D + +KL+ +++
Sbjct: 72 HICQGIRGLWGTTLTENTA--ENRELYIKTTLRELLVYIVFLVDICLLTYGMTSSSAYYYTKVMSELFLHTPSDTGVSFQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFREDILSCYDVYSPDKEEQLPFG-----PFNGTAWTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLLQQPNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELAGQKDELQLSDLLKQGYNKTLLRLRLRKERVSDVQKVLQ----GGEQEIQFEDFTNTLRELGHAEHEITELTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALN------TEIEKLGRSIVSSPQGK-----------SGPEAARAGGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLER 740 The following BLAST results are available for this feature:
BLAST of TCONS_00019731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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