TCONS_00019731-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019731-protein
Unique NameTCONS_00019731-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019731-protein ID=TCONS_00019731-protein|Name=TCONS_00019731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=793bp
MEDPGEIASENTSMSSISLTSDDVDIVNKQKRKKVEFSKHQPVGIFTRLG
RGIRGLWRTTATEGISKEDDRDTYVRMTLSELMVYLIYLITLCLMGFLML
DGTMFQFTRVMKGLFIDDPGFDGINTVPGVWNYLQNNLVDGLFWEKYYDG
SDVHHSEIGYIFFENKLMGRTRLRQLRVQEDSCNVDPIMDPVMEGCYTHY
HPDVEKKTQFGILNDTAYNNSAWKFSSEEELQGRGFTGRLATYPGGGYWR
ELSDNKRESKKMIKDLFEKSWIDRGTRALFVEFAVYNANLNLFSIGTLLF
EFPATGAVLNIYRFSTLKLLRYVTTTDYFVMGLEGLLFLMCLYYTIEEII
EVKNHGLSHFKGVWNVVDVIILILTYGCLALNLYRTFSVNSTLTSILRTR
DEFARFSLVTQWQELFNDLIAVTLFLAWMKVFKYISFNQTMAELENTLIT
CAKDVLGFTFMFMIIFFAYAQWGFAIFGAQVKSFSSVGVAMMTLFRMILG
DFDFMEIYTAKPGWGPFYFISYIFMVFFFLLNMFLAIVNDTYAEVKEEMD
EEPFDVGGYFKEGINKAMSKLSNKRDQIVDLKDVLRNADTNGDNEIEFDE
WRTHLKKMGHADFEIEALFDKFDTDGDRILNEEEVARMKEELEEDEEEVE
DDLMEINKMEKTTKHMLSKLMLRDENDDEVSESEGESESDDEEKYISSEE
FKMLMKRVDQSEESVGNIVNKMDDILNKLETMDKSKIKRRETMSRLIDSI
IEFMDRPMDGKLFKSAASLGGRNVQSAGKHSNKGSSLSIKVEM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011100XLOC_011100Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019731TCONS_00019731Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003915PKD_2
IPR002048EF_hand_dom
IPR013122PKD1_2_channel
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 564..591
NoneNo IPR availableCOILSCoilCoilcoord: 628..662
NoneNo IPR availableGENE3D1.10.238.10coord: 626..701
e-value: 0.0032
score: 16.9
NoneNo IPR availableGENE3D1.10.238.10coord: 600..625
e-value: 4.7E-7
score: 29.5
NoneNo IPR availableGENE3D1.10.287.70coord: 289..543
e-value: 2.3E-16
score: 59.3
NoneNo IPR availableGENE3D1.10.238.10coord: 544..599
e-value: 1.5E-4
score: 21.1
NoneNo IPR availableGENE3D1.10.238.10coord: 702..762
e-value: 0.08
score: 12.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 771..793
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 668..694
IPR003915Polycystic kidney disease type 2 proteinPRINTSPR01433POLYCYSTIN2coord: 457..478
score: 62.73
coord: 333..355
score: 34.78
coord: 364..384
score: 35.24
coord: 518..539
score: 65.45
coord: 707..725
score: 48.42
coord: 95..116
score: 27.27
coord: 278..300
score: 54.78
coord: 410..435
score: 50.77
IPR002048EF-hand domainSMARTSM00054efh_1coord: 580..608
e-value: 0.0019
score: 27.5
coord: 614..642
e-value: 0.29
score: 20.2
IPR002048EF-hand domainPFAMPF13202EF-hand_5coord: 581..603
e-value: 6.9E-4
score: 18.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 614..645
score: 9.13
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 576..611
score: 12.393
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 695..711
score: 6.256
IPR002048EF-hand domainCDDcd00051EFhcoord: 580..638
e-value: 1.72344E-6
score: 45.2313
IPR013122Polycystin cation channel, PKD1/PKD2PFAMPF08016PKD_channelcoord: 120..545
e-value: 7.4E-117
score: 390.5
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 623..635
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 589..601
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 579..652

Blast
[Close]
BLAST of TCONS_00019731-protein vs. Swiss-Prot (Human)
Match: PK2L1 (Polycystic kidney disease 2-like 1 protein OS=Homo sapiens GN=PKD2L1 PE=1 SV=1)

HSP 1 Score: 517.309 bits (1331), Expect = 1.108e-172
Identity = 271/699 (38.77%), Postives = 443/699 (63.38%), Query Frame = 0 
Query:   48 RLGRGIRGLWRTTATEGISKEDDRDTYVRMTLSELMVYLIYLITLCLMGFLMLDGTMFQFTRVMKGLFIDDPG-----FDGINTVPGVWNYLQNNLVDGLFWEKYYDGSDVHHSEIGYIFFENKLMGRTRLRQLRVQEDSCNVDPIMDPVMEGCYTHYHPDVEKKTQFGILNDTAYNNSAWKFSSEEELQGRGFTGRLATYPGGGYWRELSDNKRESKKMIKDLFEKSWIDRGTRALFVEFAVYNANLNLFSIGTLLFEFPATGAVLNIYRFSTLKLLRYVTTTDYFVMGLEGLLFLMCLYYTIEEIIEVKNHGLSHFKGVWNVVDVIILILTYGCLALNLYRTFSVNSTLTSILRTRDEFARFSLVTQWQELFNDLIAVTLFLAWMKVFKYISFNQTMAELENTLITCAKDVLGFTFMFMIIFFAYAQWGFAIFGAQVKSFSSVGVAMMTLFRMILGDFDFMEIYTAKPGWGPFYFISYIFMVFFFLLNMFLAIVNDTYAEVKEEM--DEEPFDVGGYFKEGINKAMSKLSNKRDQIVDLKDVLRNADTNGDNEIEFDEWRTHLKKMGHADFEI---EALFDKFDTDGDRILNEEEVARMKEELEEDEEEVEDDLMEINKMEKTTKHMLSKLMLRDENDDEVSESEGES--ESDDEEKYISSEEFKMLMKRVDQSEESVGNIVNKMDDILNKLETMDK 734
             + +GIRGLW TT TE  +  ++R+ Y++ TL EL+VY+++L+ +CL+ + M   + + +T+VM  LF+  P      F  I+++   W++ Q  L+D L+W K+Y+   + H    +I++EN L+G  RLRQL+V+ DSC V       +  CY  Y PD E++  FG      +N +AW + S++EL G    GRL +Y GGGY+ +L  +++ S + ++ L E  W+DRGTR +F++F+VYNAN+NLF +  L+ EFPATG  +  ++  T+KL+RYV+  D+F++G E +  +   YY +EEI+E+  H L +   +WN++D+++++L+   +  +++RT  VN  +  +L+  + +A F  +  WQ  +N++ AV LF AW+K+FKYISFN+TM +L +TL  CAKD+LGF  MF I+FFAYAQ G+ +FG QV++FS+    + T FR+ILGDFD+  I  A    GP YF++Y+F VFF LLNMFLAI+NDTY+EVKEE+   ++   +    K+G NK + +L  +++++ D++ VL+     G+ EI+F+++   L+++GHA+ EI    A F KFD DG+RIL+E+E  +M+++LEE+   +     EI K+ ++                 VS  +G+S  E+     ++S EEF ML +RV Q E  +  +V+++D + +KL+ +++
Sbjct:   72 HICQGIRGLWGTTLTENTA--ENRELYIKTTLRELLVYIVFLVDICLLTYGMTSSSAYYYTKVMSELFLHTPSDTGVSFQAISSMADFWDFAQGPLLDSLYWTKWYNNQSLGHGSHSFIYYENMLLGVPRLRQLKVRNDSCVVHEDFREDILSCYDVYSPDKEEQLPFG-----PFNGTAWTYHSQDELGGFSHWGRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLRLVVEFPATGGAIPSWQIRTVKLIRYVSNWDFFIVGCEVIFCVFIFYYVVEEILELHIHRLRYLSSIWNILDLVVILLSIVAVGFHIFRTLEVNRLMGKLLQQPNTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAVMFFIVFFAYAQLGYLLFGTQVENFSTFIKCIFTQFRIILGDFDYNAIDNANRILGPAYFVTYVFFVFFVLLNMFLAIINDTYSEVKEELAGQKDELQLSDLLKQGYNKTLLRLRLRKERVSDVQKVLQ----GGEQEIQFEDFTNTLRELGHAEHEITELTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALN---TEIEKLGRSI----------------VSSPQGKSGPEAARAGGWVSGEEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLER 740
The following BLAST results are available for this feature:
BLAST of TCONS_00019731-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PK2L11.108e-17238.77Polycystic kidney disease 2-like 1 protein OS=Homo... [more]
back to top