TCONS_00019700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019700
Unique NameTCONS_00019700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019700 ID=TCONS_00019700|Name=TCONS_00019700|organism=Clytia hemisphaerica|type=transcript|length=268bp
TCCTCAATCGTGGTGGTTTTCAACTCAAAGGTGTTGCCTTCTCGGGGGAG
GAACCGCCAAGCTCACTCAGCGAAGACAACAACACTATCTTTGTCGCTGG
CATGAAATGGTTCGTCAAAGAAGACATGCTATCATTACACGTCAGTGAAC
TCAACTTTGCTAAGAAGAACCGGGGTAAGAAACCTTTAAATCTACAAAAC
ATCATACCCTCTCGTCTCACTCGTCGTCACTGTGCTTCAAAAGTAGCAGA
GATCTTTGATTTAGCTGG
Run BLAST on NCBI

transcript from alignment at sc0000333:323434..323701

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019700 ID=TCONS_00019700|Name=TCONS_00019700|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000333:323434..323701 (Clytia hemisphaerica)
CCAGCTAAATCAAAGATCTCTGCTACTTTTGAAGCACAGTGACGACGAGT
GAGACGAGAGGGTATGATGTTTTGTAGATTTAAAGGTTTCTTACCCCGGT
TCTTCTTAGCAAAGTTGAGTTCACTGACGTGTAATGATAGCATGTCTTCT
TTGACGAACCATTTCATGCCAGCGACAAAGATAGTGTTGTTGTCTTCGCT
GAGTGAGCTTGGCGGTTCCTCCCCCGAGAAGGCAACACCTTTGAGTTGAA
AACCACCACGATTGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011091XLOC_011091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019700-exon-sc0000333-1491911889:323434..323701TCONS_00019700-exon-sc0000333-1491911889:323434..323701Clytia hemisphaericaexon
TCONS_00019700-exon-sc0000333-1510915933:323434..323701TCONS_00019700-exon-sc0000333-1510915933:323434..323701Clytia hemisphaericaexon
TCONS_00019700-exon-sc0000333-1575043694:323434..323701TCONS_00019700-exon-sc0000333-1575043694:323434..323701Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:323434..323701 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08229	3.41218	3.96187	1.93803	1.57291	0	0	2.10579	0.491438	0	0	0.776795	0	1.61118	0.331151	0.355376	0	0	0	0	0.563856	2.47526	0	0.607916	1.87842	0.558814	0	0.85342	3.88373	1.97846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top