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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019671 ID=TCONS_00019671|Name=TCONS_00019671|organism=Clytia hemisphaerica|type=transcript|length=3879bpRun BLAST on NCBI protein sequence of TCONS_00019671-protein >TCONS_00019671-protein ID=TCONS_00019671-protein|Name=TCONS_00019671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=989bp MDVDQVKRKHTDEDGGSSIQQPPTHQNIPFLKEEDIKSEESPNKKQAVMWRun BLAST on NCBI transcript from alignment at sc0000333:69121..113989- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019671 ID=TCONS_00019671|Name=TCONS_00019671|organism=Clytia hemisphaerica|type=transcript|length=44869bp|location=Sequence derived from alignment at sc0000333:69121..113989- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000333:69121..113989- >TCONS_00019671 ID=TCONS_00019671|Name=TCONS_00019671|organism=Clytia hemisphaerica|type=CDS|length=23760bp|location=Sequence derived from alignment at sc0000333:69121..113989- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019671 vs. Swiss-Prot (Human)
Match: RED1 (Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 3.379e-75 Identity = 182/523 (34.80%), Postives = 265/523 (50.67%), Query Frame = 1
Query: 1903 AANHPIVLLLKLNPQTRFVVTEDYDCEITSKYKAIAYVGDRQF-SGEGPNKKCAKTVAARGALQELFGIDADNYVEETRNDIFEDNEPKKEVPVELSNRIADAVQKKFLEVFQGET--------QCKVIAAFVVADCQTSIEEPDLRVVSIGTGTKCITGEMIDHKGQTLNDCHGEIIACRGFRRFMFDELIKALKSDED---TLFERIPSTKKYRLKAQHKIYLFVNTAPCGDGRVFT------------------------LQ-----------TQQQQGA----------KNKTAGLLRTKIENGQGTIPVPEN-NIQTSDGILEGERLRTMSCSDKILKWNALGVQGALLSYFIDPIYLEGIVIGLHYNYDALCRALYKRAIKMDDCPGDYRLNRPALGSPNNMETSRDTSKATSNSFNWYHQERTAEAVNATNGKTVILTPSRLCKLNFFDKFMQ------SLKLHPDRVEPRTYQSAKSYATDYQKTKELFFKSLEDTTCGKWIGKPYEHDMFGY*P 3279
+ +P+++L +L P ++ + E +K ++ V D QF G G NKK AK AA+ AL +F + D +R I P + + + L +ADAV + L F T + KV+A V+ T + D +V+S+ TGTKCI GE + +G LNDCH EII+ R RF++ +L L + +D ++F++ +RLK + +L+++T+PCGD R+F+ LQ T QGA K G LRTKIE+G+GTIPV N +IQT DG+L+GERL TMSCSDKI +WN +G+QG+LLS F++PIY I++G Y+ D L RA+Y+R ++D P Y LN+P L +N E +R KA + S NW + E +NAT GK + SRLCK + ++M+ S L +P Y +K A +YQ K F + G W+ KP E D F P
Sbjct: 232 SGKNPVMILNELRPGLKYDFLSE-SGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQ--TPSRQPI-----PSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMT---TGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQK-SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAE-ARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSLTP 741 The following BLAST results are available for this feature:
BLAST of TCONS_00019671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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