TCONS_00019671-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019671-protein
Unique NameTCONS_00019671-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019671-protein ID=TCONS_00019671-protein|Name=TCONS_00019671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=989bp
MDVDQVKRKHTDEDGGSSIQQPPTHQNIPFLKEEDIKSEESPNKKQAVMW
SGGKNPVQLLHEKFQDIEYEFSQDGVAHEPKFKVKAQINGENFEAIGLSK
QKAKSKVAVLALRQLGFGNILGEELTDEGYRKEAPIWNYEPFGTKSPIDL
NLLNKQKSENLDIDFTSDNTEFFESQMPGRERDERLLYAPPSSRNSGLGP
WGSNRYSPTSGYGRNGGNGQRPGVAHIMGPMSPPQAVAHKFSQLFSNRPA
INVEKARTFPVMVLSEIFPDIKIEWTEGSGRGDRQFKVEAEVQGRRFFGE
GRSKKIAKLNLAKTILLCMYDIHDFKDAVETTPKSSQKKSTDHETQMEKK
FPLTQLKTLAGDDLTIDVQQQDELNDQGEKIFIATIVVRGVAYEAIGKHK
NLARLRAAKKALDSLRPKKEGGSDSSLNDSMNSDSGPKEVDTTRHPTMVF
YEMYRDVQFNCEETKGSNGLNEYLVEAEVEGKKYTGKACSKKKAKLRLVL
NAFEDLRDIPLAEWSGIDLNETMEDRTLSNNPAANHPIVLLLKLNPQTRF
VVTEDYDCEITSKYKAIAYVGDRQFSGEGPNKKCAKTVAARGALQELFGI
DADNYVEETRNDIFEDNEPKKEVPVELSNRIADAVQKKFLEVFQGETQCK
VIAAFVVADCQTSIEEPDLRVVSIGTGTKCITGEMIDHKGQTLNDCHGEI
IACRGFRRFMFDELIKALKSDEDTLFERIPSTKKYRLKAQHKIYLFVNTA
PCGDGRVFTLQTQQQQGAKNKTAGLLRTKIENGQGTIPVPENNIQTSDGI
LEGERLRTMSCSDKILKWNALGVQGALLSYFIDPIYLEGIVIGLHYNYDA
LCRALYKRAIKMDDCPGDYRLNRPALGSPNNMETSRDTSKATSNSFNWYH
QERTAEAVNATNGKTVILTPSRLCKLNFFDKFMQSLKLHPDRVEPRTYQS
AKSYATDYQKTKELFFKSLEDTTCGKWIGKPYEHDMFGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011073XLOC_011073Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019671TCONS_00019671Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
IPR002466A_deamin
Vocabulary: Molecular Function
TermDefinition
GO:0004000adenosine deaminase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
molecular_function GO:0004000 adenosine deaminase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 56..116
e-value: 6.7E-13
score: 58.9
coord: 352..416
e-value: 0.28
score: 10.5
coord: 537..598
e-value: 0.0017
score: 27.6
coord: 446..507
e-value: 0.14
score: 13.3
coord: 260..320
e-value: 0.02
score: 21.2
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 64..115
e-value: 1.4E-6
score: 28.8
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 55..117
score: 12.645
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 283..321
score: 8.591
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 451..508
score: 8.882
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 570..599
score: 10.217
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 351..417
score: 9.683
IPR002466Adenosine deaminase/editaseSMARTSM00552adara_8coord: 630..988
e-value: 6.6E-100
score: 347.9
IPR002466Adenosine deaminase/editasePFAMPF02137A_deamincoord: 673..981
e-value: 7.2E-88
score: 295.1
IPR002466Adenosine deaminase/editasePROSITEPS50141A_DEAMIN_EDITASEcoord: 673..987
score: 72.676
NoneNo IPR availableGENE3D3.30.160.20coord: 515..605
e-value: 9.8E-8
score: 31.1
NoneNo IPR availableGENE3D3.30.160.20coord: 40..117
e-value: 4.6E-12
score: 45.5
NoneNo IPR availableGENE3D3.30.160.20coord: 354..443
e-value: 6.2E-7
score: 28.9
coord: 260..352
e-value: 2.0E-7
score: 30.5
NoneNo IPR availableGENE3D3.30.160.20coord: 444..513
e-value: 9.0E-5
score: 22.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..442
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50
NoneNo IPR availableCDDcd00048DSRMcoord: 55..115
e-value: 4.28332E-9
score: 53.4303
NoneNo IPR availableCDDcd00048DSRMcoord: 260..316
e-value: 2.04763E-5
score: 42.6447
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 440..509
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 372..416
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 530..601
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 49..117
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 260..321

Blast
[Close]
BLAST of TCONS_00019671-protein vs. Swiss-Prot (Human)
Match: RED1 (Double-stranded RNA-specific editase 1 OS=Homo sapiens GN=ADARB1 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.377e-76
Identity = 181/519 (34.87%), Postives = 264/519 (50.87%), Query Frame = 0 
Query:  533 AANHPIVLLLKLNPQTRFVVTEDYDCEITSKYKAIAYVGDRQF-SGEGPNKKCAKTVAARGALQELFGIDADNYVEETRNDIFEDNEPKKEVPVELSNRIADAVQKKFLEVFQGET--------QCKVIAAFVVADCQTSIEEPDLRVVSIGTGTKCITGEMIDHKGQTLNDCHGEIIACRGFRRFMFDELIKALKSDED---TLFERIPSTKKYRLKAQHKIYLFVNTAPCGDGRVFT------------------------LQ-----------TQQQQGA----------KNKTAGLLRTKIENGQGTIPVPEN-NIQTSDGILEGERLRTMSCSDKILKWNALGVQGALLSYFIDPIYLEGIVIGLHYNYDALCRALYKRAIKMDDCPGDYRLNRPALGSPNNMETSRDTSKATSNSFNWYHQERTAEAVNATNGKTVILTPSRLCKLNFFDKFMQ------SLKLHPDRVEPRTYQSAKSYATDYQKTKELFFKSLEDTTCGKWIGKPYEHDMF 987
            +  +P+++L +L P  ++    +   E  +K   ++ V D QF  G G NKK AK  AA+ AL  +F +  D     +R  I     P + + + L   +ADAV +  L  F   T        + KV+A  V+    T  +  D +V+S+ TGTKCI GE +  +G  LNDCH EII+ R   RF++ +L   L + +D   ++F++      +RLK   + +L+++T+PCGD R+F+                        LQ           T   QGA            K  G LRTKIE+G+GTIPV  N +IQT DG+L+GERL TMSCSDKI +WN +G+QG+LLS F++PIY   I++G  Y+ D L RA+Y+R   ++D P  Y LN+P L   +N E +R   KA + S NW   +   E +NAT GK  +   SRLCK   + ++M+      S  L     +P  Y  +K  A +YQ  K   F +      G W+ KP E D F
Sbjct:  232 SGKNPVMILNELRPGLKYDFLSE-SGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALAAIFNLHLDQ--TPSRQPI-----PSEGLQLHLPQVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMT---TGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQK-SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEGSRSYTQAGVQWCNHGSLQPRPPGLLSDPSTSTFQGAGTTEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLNKPLLSGISNAE-ARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQF 737
The following BLAST results are available for this feature:
BLAST of TCONS_00019671-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RED11.377e-7634.87Double-stranded RNA-specific editase 1 OS=Homo sap... [more]
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