TCONS_00019653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019653
Unique NameTCONS_00019653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2095

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019653 ID=TCONS_00019653|Name=TCONS_00019653|organism=Clytia hemisphaerica|type=transcript|length=2095bp
CagaaagcaaaatatttaaattataataaaataatGGTTTCTACTAGATC
CCAACACAAGCTTGACAAAGcACGGAACCGTAAAAAACACCAACAAAAGT
CATCCTCAGACACAACGAGTGAAGACgatgaaaacatttcaaacaccAGT
GGTgaagaagaaactgaaaaattggaagaatTCGAAGATCCCAACAGTGG
TTTGGATACTGTCACCGCCATTATGTTGATTTTTGTCATCTTTACTGTAG
CTTTTATTGGTCTGTCTTTCGTTTATATGAAATTCCCTAAAATGAGTGCA
GAAGATGAGAGGAAAGTCAAATTACCGAAATCCATTGATGATGCTAAAGC
CCTGGGTAAAGTGTTATCCAGATATACTGATAATTACTTCTTTGAAGTGT
TAGTCGCGTTTACGCTTACTTACATATTTTTACAATCATTCGCCATCCCT
GGATCGATCTTCCTCAGTATTTTATCAGGTTACTTATTTCCATTTCCGTT
AGCTTTGTTTCTGGTTTGTTTTTGTTCAAGCTCTGGTGCATCTTTTTGTT
ACCTTATATCATCAATTATCGGTCAGAAAGTGGTTAACAGATTTTTCTTG
GAACGCGTTCGCAAATGGAAAACACAAGTCCAACGCCATGAGAAAGATCT
CCTCAGCTATATCACTTTTCTTAGAATTACACCATTTTTACCAAATTGGT
TTATCAATATCACATCACCAGTTCTCAATGTACCTCTTACCCCATTCTTT
GTTGGCACCTTTCTCGGCGTGGCGCCGCCATCCTTCGGCTTCATCAGTGC
CGGTGTTGAGTTATACGAGTTGACAACCACCGGAGATGCATTCTCATTTA
AGTCTGTTCTCATAGTTATTGGTTCAGCAATTATTTCCTTATTACCTGTC
ATGTTTCGAAGACAATTGCAGAAGAAGATTgagtaaattatttttgactt
taaatATCTATTCGCTTTAAAGGGACAGAAAAATACtgacaaaatttgta
aacaaaccgtatgcagcgggatacaaaatcaaaaacgaagttacatgtca
aaatcaaaaatcaaaacaaatatggctgcaTTTATTGAAATAGTTACCAT
CCATCCAGAACATCCAGAATTTAAAAGCTTTCTCTAAGGATTTGACTTAT
ACAATATCTAGAATATTTAAATTTCGCTTTTTTTCAATCGGGATGGGTAA
GAGGTCgggtgaaatatttaacttaaaGTAGAACGTTTAGGAAAATTTAG
tcagcttttgaaatttttacaaaGGGACATATataagtagtaaaatgtaa
aaaatcaaaaagaacaattaaaatcacgtgtccaaaacaaacttgtaaaa
caattgaaacaatcaaaatcagccatatttgttttggtttgttattttga
catgtgacatttgttttgattttgtaccccgctgcatacggtttgtttac
agaTTTCGTCAGAACTTTTCTGACCCTTTACACATTTTGTCATATACCCT
TGATATGAGATTTTATTAACCATGGCATTTTTTATTATTGATGCGATACC
ATAGTATCATAGCTacatgggccccggcgagccattttgagtgagggggc
caacattttGGCCCATGGTcaaccatggttgggcgacaaagaaaattttt
cactttttgcaccctcaaaacaccttaaaacgatatctaTTTGGGGAGAA
Ttatagtttttgtggtttgatttggtctcaaactggcttaaaatagtaac
tcttaaaaacgtatgtcatggtctaccaaaaagtgggggggggggcatgg
acCCCTCGGTCCCCCCGTTGACGGGGCCCATGAGCTATTTGTATTTATAA
TTGAATTTAATACTTCTaagaaattctgtaaaaaagtCAACTCTTTACAA
TTTTCTACAAAGCTCTATTAAGAATATTATCACAAACTAGAATTTTagct
ttttaatttatttttagctTCTTATTGTTTAAAATGGactattttgtcat
ttttttctaaggtaATTGTATTTTAAGTTTAGGTaacaattttcctttta
aaatgaattcaaatattttcatcaaatttaaatattttcatcaaa
Run BLAST on NCBI

protein sequence of TCONS_00019653-protein

>TCONS_00019653-protein ID=TCONS_00019653-protein|Name=TCONS_00019653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
QKAKYLNYNKIMVSTRSQHKLDKARNRKKHQQKSSSDTTSEDDENISNTS
GEEETEKLEEFEDPNSGLDTVTAIMLIFVIFTVAFIGLSFVYMKFPKMSA
EDERKVKLPKSIDDAKALGKVLSRYTDNYFFEVLVAFTLTYIFLQSFAIP
GSIFLSILSGYLFPFPLALFLVCFCSSSGASFCYLISSIIGQKVVNRFFL
ERVRKWKTQVQRHEKDLLSYITFLRITPFLPNWFINITSPVLNVPLTPFF
VGTFLGVAPPSFGFISAGVELYELTTTGDAFSFKSVLIVIGSAIISLLPV
MFRRQLQKKIE
Run BLAST on NCBI

transcript from alignment at sc0000333:226798..229621+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019653 ID=TCONS_00019653|Name=TCONS_00019653|organism=Clytia hemisphaerica|type=transcript|length=2824bp|location=Sequence derived from alignment at sc0000333:226798..229621+ (Clytia hemisphaerica)
CagaaagcaaaatatttaaattataataaaataatGGTTTCTACTAGATC
CCAACACAAGCTTGACAAAGGTAAACCAACTGTTTATATGtagctttttt
tcaaattttataaaatcttttagataaaaaaaggTTTCATTTTTGCTTAT
AATTCACTATTACTAGCTCTTTCTTTAGTCCCTGTAAATATGAAACCTCA
TACAGGGGTCACCAATAACATTTTCAGATAATTTGAATTCAATTTATCTT
CTCAAGTGTAAAGATTAGACGAtcacattttttaacttttaaaagtAGAA
GAATTTGATTTTCGGTGAATTTCACAAATTAGGCCAAGTGGATCAAAAGA
TATGctgaaaaaaagataaatgTTACTTTTGGAAAGAGCCTACACTAAAT
AATGCCTACTGAAAAAACCTAACACTTCTCTCCAACCTGGGCAGATTGGg
gtcttccagaaaatttttgtacatgggggtggaggatatattttGTCcga
ggggtagtgaaaaatcttgGGGGCAAACTTGCCTTGATTAGGGGTGAATC
TGAATGTCtggggtcaactaatgcttgtctGGGGGTGAGATCCGTTGTCT
GGGGGTAAAAATTCACAATATCCGGggataaatttccaaaaaatatatcc
tccacccctcatattcaaattttttctggaagagcccattcccTTTTCAG
AGCCACGCGCGGAGTAATCACAATCACAATCAGCCTAGAGATTAGGTTTG
AATTATAAATTATTAATTGTGTCTTtaaaattcctttgtttactttcagc
ACGGAACCGTAAAAAACACCAACAAAAGTCATCCTCAGACACAACGAGTG
AAGACgatgaaaacatttcaaacaccAGTGGTgaagaagaaactgaaaaa
ttggaagaatTCGAAGATCCCAACAGTGGTTTGGATACTGTCACCGCCAT
TATGTTGATTTTTGTCATCTTTACTGTAGCTTTTATTGGTCTGTCTTTCG
TTTATATGAAATTCCCTAAAATGAGTGCAGAAGATGAGAGGAAAGTCAAA
TTACCGAAATCCATTGATGATGCTAAAGCCCTGGGTAAAGTGTTATCCAG
ATATACTGATAATTACTTCTTTGAAGTGTTAGTCGCGTTTACGCTTACTT
ACATATTTTTACAATCATTCGCCATCCCTGGATCGATCTTCCTCAGTATT
TTATCAGGTTACTTATTTCCATTTCCGTTAGCTTTGTTTCTGGTTTGTTT
TTGTTCAAGCTCTGGTGCATCTTTTTGTTACCTTATATCATCAATTATCG
GTCAGAAAGTGGTTAACAGATTTTTCTTGGAACGCGTTCGCAAATGGAAA
ACACAAGTCCAACGCCATGAGAAAGATCTCCTCAGCTATATCACTTTTCT
TAGAATTACACCATTTTTACCAAATTGGTTTATCAATATCACATCACCAG
TTCTCAATGTACCTCTTACCCCATTCTTTGTTGGCACCTTTCTCGGCGTG
GCGCCGCCATCCTTCGGCTTCATCAGTGCCGGTGTTGAGTTATACGAGTT
GACAACCACCGGAGATGCATTCTCATTTAAGTCTGTTCTCATAGTTATTG
GTTCAGCAATTATTTCCTTATTACCTGTCATGTTTCGAAGACAATTGCAG
AAGAAGATTgagtaaattatttttgactttaaatATCTATTCGCTTTAAA
GGGACAGAAAAATACtgacaaaatttgtaaacaaaccgtatgcagcggga
tacaaaatcaaaaacgaagttacatgtcaaaatcaaaaatcaaaacaaat
atggctgcaTTTATTGAAATAGTTACCATCCATCCAGAACATCCAGAATT
TAAAAGCTTTCTCTAAGGATTTGACTTATACAATATCTAGAATATTTAAA
TTTCGCTTTTTTTCAATCGGGATGGGTAAGAGGTCgggtgaaatatttaa
cttaaaGTAGAACGTTTAGGAAAATTTAGtcagcttttgaaatttttaca
aaGGGACATATataagtagtaaaatgtaaaaaatcaaaaagaacaattaa
aatcacgtgtccaaaacaaacttgtaaaacaattgaaacaatcaaaatca
gccatatttgttttggtttgttattttgacatgtgacatttgttttgatt
ttgtaccccgctgcatacggtttgtttacagaTTTCGTCAGAACTTTTCT
GACCCTTTACACATTTTGTCATATACCCTTGATATGAGATTTTATTAACC
ATGGCATTTTTTATTATTGATGCGATACCATAGTATCATAGCTacatggg
ccccggcgagccattttgagtgagggggccaacattttGGCCCATGGTca
accatggttgggcgacaaagaaaatttttcactttttgcaccctcaaaac
accttaaaacgatatctaTTTGGGGAGAATtatagtttttgtggtttgat
ttggtctcaaactggcttaaaatagtaactcttaaaaacgtatgtcatgg
tctaccaaaaagtgggggggggggcatggacCCCTCGGTCCCCCCGTTGA
CGGGGCCCATGAGCTATTTGTATTTATAATTGAATTTAATACTTCTaaga
aattctgtaaaaaagtCAACTCTTTACAATTTTCTACAAAGCTCTATTAA
GAATATTATCACAAACTAGAATTTTagctttttaatttatttttagctTC
TTATTGTTTAAAATGGactattttgtcatttttttctaaggtaATTGTAT
TTTAAGTTTAGGTaacaattttccttttaaaatgaattcaaatattttca
tcaaatttaaatattttcatcaaa

Coding sequence (CDS) from alignment at sc0000333:226798..229621+

>TCONS_00019653 ID=TCONS_00019653|Name=TCONS_00019653|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000333:226798..229621+ (Clytia hemisphaerica)
CagaaagcaaaatatttaaattataataaaataatGGTTTCTACTAGATC
CCAACACAAGCTTGACAAAGcACGGAACCGTAAAAAACACCAACAAAAGT
CATCCTCAGACACAACGAGTGAAGACgatgaaaacatttcaaacaccAGT
GGTgaagaagaaactgaaaaattggaagaatTCGAAGATCCCAACAGTGG
TTTGGATACTGTCACCGCCATTATGTTGATTTTTGTCATCTTTACTGTAG
CTTTTATTGGTCTGTCTTTCGTTTATATGAAATTCCCTAAAATGAGTGCA
GAAGATGAGAGGAAAGTCAAATTACCGAAATCCATTGATGATGCTAAAGC
CCTGGGTAAAGTGTTATCCAGATATACTGATAATTACTTCTTTGAAGTGT
TAGTCGCGTTTACGCTTACTTACATATTTTTACAATCATTCGCCATCCCT
GGATCGATCTTCCTCAGTATTTTATCAGGTTACTTATTTCCATTTCCGTT
AGCTTTGTTTCTGGTTTGTTTTTGTTCAAGCTCTGGTGCATCTTTTTGTT
ACCTTATATCATCAATTATCGGTCAGAAAGTGGTTAACAGATTTTTCTTG
GAACGCGTTCGCAAATGGAAAACACAAGTCCAACGCCATGAGAAAGATCT
CCTCAGCTATATCACTTTTCTTAGAATTACACCATTTTTACCAAATTGGT
TTATCAATATCACATCACCAGTTCTCAATGTACCTCTTACCCCATTCTTT
GTTGGCACCTTTCTCGGCGTGGCGCCGCCATCCTTCGGCTTCATCAGTGC
CGGTGTTGAGTTATACGAGTTGACAACCACCGGAGATGCATTCTCATTTA
AGTCTGTTCTCATAGTTATTGGTTCAGCAATTATTTCCTTATTACCTGTC
ATGTTTCGAAGACAATTGCAGAAGAAGATTgagtaaCagaaagcaaaata
tttaaattataataaaataatGGTTTCTACTAGATCCCAACACAAGCTTG
ACAAAGcACGGAACCGTAAAAAACACCAACAAAAGTCATCCTCAGACACA
ACGAGTGAAGACgatgaaaacatttcaaacaccAGTGGTgaagaagaaac
tgaaaaattggaagaatTCGAAGATCCCAACAGTGGTTTGGATACTGTCA
CCGCCATTATGTTGATTTTTGTCATCTTTACTGTAGCTTTTATTGGTCTG
TCTTTCGTTTATATGAAATTCCCTAAAATGAGTGCAGAAGATGAGAGGAA
AGTCAAATTACCGAAATCCATTGATGATGCTAAAGCCCTGGGTAAAGTGT
TATCCAGATATACTGATAATTACTTCTTTGAAGTGTTAGTCGCGTTTACG
CTTACTTACATATTTTTACAATCATTCGCCATCCCTGGATCGATCTTCCT
CAGTATTTTATCAGGTTACTTATTTCCATTTCCGTTAGCTTTGTTTCTGG
TTTGTTTTTGTTCAAGCTCTGGTGCATCTTTTTGTTACCTTATATCATCA
ATTATCGGTCAGAAAGTGGTTAACAGATTTTTCTTGGAACGCGTTCGCAA
ATGGAAAACACAAGTCCAACGCCATGAGAAAGATCTCCTCAGCTATATCA
CTTTTCTTAGAATTACACCATTTTTACCAAATTGGTTTATCAATATCACA
TCACCAGTTCTCAATGTACCTCTTACCCCATTCTTTGTTGGCACCTTTCT
CGGCGTGGCGCCGCCATCCTTCGGCTTCATCAGTGCCGGTGTTGAGTTAT
ACGAGTTGACAACCACCGGAGATGCATTCTCATTTAAGTCTGTTCTCATA
GTTATTGGTTCAGCAATTATTTCCTTATTACCTGTCATGTTTCGAAGACA
ATTGCAGAAGAAGATTgagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011063XLOC_011063Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019653-proteinTCONS_00019653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019653-exon-sc0000333-1491911889:226798..226867TCONS_00019653-exon-sc0000333-1491911889:226798..226867Clytia hemisphaericaexon
TCONS_00019653-exon-sc0000333-1510915933:226798..226867TCONS_00019653-exon-sc0000333-1510915933:226798..226867Clytia hemisphaericaexon
TCONS_00019653-exon-sc0000333-1575043694:226798..226867TCONS_00019653-exon-sc0000333-1575043694:226798..226867Clytia hemisphaericaexon
TCONS_00019653-exon-sc0000333-1491911889:227597..229621TCONS_00019653-exon-sc0000333-1491911889:227597..229621Clytia hemisphaericaexon
TCONS_00019653-exon-sc0000333-1510915933:227597..229621TCONS_00019653-exon-sc0000333-1510915933:227597..229621Clytia hemisphaericaexon
TCONS_00019653-exon-sc0000333-1575043694:227597..229621TCONS_00019653-exon-sc0000333-1575043694:227597..229621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:226798..229621 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0422	15.9715	4.37761	2.39024	27.332	18.855	21.1977	21.9885	15.1248	16.2674	10.9054	8.22485	6.08972	6.59054	7.33904	7.64452	12.3742	8.93314	3.2253	3.5455	6.65895	6.08516	18.1133	16.9467	7.18077	11.781	5.66012	4.34209	15.3989	14.4971
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032816SNARE_assoc
Blast
[Close]
BLAST of TCONS_00019653 vs. Swiss-Prot (Human)
Match: TM41B (Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 2.907e-95
Identity = 139/247 (56.28%), Postives = 193/247 (78.14%), Query Frame = 1 
Query:  193 NSGLDTVTAIMLIFVIFTVAFIGLSFVYMKFPKMSAEDERKVKLPKSIDDAKALGKVLSRYTDNYFFEVLVAFTLTYIFLQSFAIPGSIFLSILSGYLFPFPLALFLVCFCSSSGASFCYLISSIIGQKVVNRFFLERVRKWKTQVQRHEKDLLSYITFLRITPFLPNWFINITSPVLNVPLTPFFVGTFLGVAPPSFGFISAGVELYELTTTGDAFSFKSVLIVIGSAIISLLPVMFRRQLQKKIE 933
             +G   ++ ++L+ +  + AF+ +  VY  FP++S E+   +K+P+ +DDAKALGKVLS+Y D ++ +VLVA+  TYIFLQ+FAIPGSIFLSILSG+L+PFPLALFLVC CS  GASFCY++S ++G+ VV ++  E+  KW  QV+RH + L++YI FLRITPFLPNWFINITSPV+NVPL  FF+GTFLGVAPPSF  I AG  LY+LTT G+A S+ S+ I++  A++S+LP +F+++L++K E
Sbjct:   46 EAGSARMSLLILVSIFLSAAFV-MFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE 291
The following BLAST results are available for this feature:
BLAST of TCONS_00019653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM41B2.907e-9556.28Transmembrane protein 41B OS=Homo sapiens GN=TMEM4... [more]
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