TCONS_00019653-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019653-protein
Unique Name	TCONS_00019653-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	311

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019653-protein ID=TCONS_00019653-protein|Name=TCONS_00019653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
QKAKYLNYNKIMVSTRSQHKLDKARNRKKHQQKSSSDTTSEDDENISNTS
GEEETEKLEEFEDPNSGLDTVTAIMLIFVIFTVAFIGLSFVYMKFPKMSA
EDERKVKLPKSIDDAKALGKVLSRYTDNYFFEVLVAFTLTYIFLQSFAIP
GSIFLSILSGYLFPFPLALFLVCFCSSSGASFCYLISSIIGQKVVNRFFL
ERVRKWKTQVQRHEKDLLSYITFLRITPFLPNWFINITSPVLNVPLTPFF
VGTFLGVAPPSFGFISAGVELYELTTTGDAFSFKSVLIVIGSAIISLLPV
MFRRQLQKKIE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011063	XLOC_011063	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019653	TCONS_00019653	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032816	SNARE_assoc

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 303..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
IPR032816	SNARE associated Golgi protein	PFAM	PF09335	SNARE_assoc	coord: 149..268 e-value: 7.6E-20 score: 71.5

Blast

[Close]

BLAST of TCONS_00019653-protein vs. Swiss-Prot (Human)
Match: TM41B (Transmembrane protein 41B OS=Homo sapiens GN=TMEM41B PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.219e-103
Identity = 145/291 (49.83%), Postives = 208/291 (71.48%), Query Frame = 0

Query:   24 ARNRKKHQQKSSSDTTSEDDENISNTSG---EEETEKLEEFEDPNSGLDTVTAIMLIFVIFTVAFIGLSFVYMKFPKMSAEDERKVKLPKSIDDAKALGKVLSRYTDNYFFEVLVAFTLTYIFLQSFAIPGSIFLSILSGYLFPFPLALFLVCFCSSSGASFCYLISSIIGQKVVNRFFLERVRKWKTQVQRHEKDLLSYITFLRITPFLPNWFINITSPVLNVPLTPFFVGTFLGVAPPSFGFISAGVELYELTTTGDAFSFKSVLIVIGSAIISLLPVMFRRQLQKKIE 311
            A+ R   + +  +  T+   +  + T G       +  +E     +G   ++ ++L+ +  + AF+ +  VY  FP++S E+   +K+P+ +DDAKALGKVLS+Y D ++ +VLVA+  TYIFLQ+FAIPGSIFLSILSG+L+PFPLALFLVC CS  GASFCY++S ++G+ VV ++  E+  KW  QV+RH + L++YI FLRITPFLPNWFINITSPV+NVPL  FF+GTFLGVAPPSF  I AG  LY+LTT G+A S+ S+ I++  A++S+LP +F+++L++K E
Sbjct:    2 AKGRVAERSQLGAHHTTPVGDGAAGTRGLAAPGSRDHQKEKSWVEAGSARMSLLILVSIFLSAAFV-MFLVYKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPNWFINITSPVINVPLKVFFIGTFLGVAPPSFVAIKAGTTLYQLTTAGEAVSWNSIFILMILAVLSILPAIFQKKLKQKFE 291

The following BLAST results are available for this feature:

BLAST of TCONS_00019653-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019653-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TM41B	1.219e-103	49.83	Transmembrane protein 41B OS=Homo sapiens GN=TMEM4...	[more]

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TCONS_00019653-protein (polypeptide) - C. hemisphaerica