TCONS_00019652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019652
Unique NameTCONS_00019652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019652 ID=TCONS_00019652|Name=TCONS_00019652|organism=Clytia hemisphaerica|type=transcript|length=862bp
GTGGTTTTTCACTGTTTAAATTTTAGGTCGCCAAATGATTCGAAAAAGTC
GTTTCTTCTTGGCAAAACTCATTATCACAATCCTGATATACGTTAGTGCT
TTTATGACAATGATCTACAAATACCCAGATAATTTCCTGTACAAAAGCTT
GGAGAAGAATTACCTGCCATCTCTATGTAAAATTTTGATCATGATCCCGT
TCGTAACAGGTTTGGTTCTACCTTTAGCGTTGTTTACAATCCTTTGCAAT
GCATTAACGTACACATTTAAAGGATTCTATGATGCATTGCAACATCACCA
GGCAAGCAAAGGTTTATGCTGTAAGAAGTTTATCAAAGGCATACGAACAA
GTTACCTCAGACTGACCATTCTCTGTGAAGATTTTGATGACATGTTTTCA
CTAATGCTGATGTTCTCTTACCTCATTGATGTTGTGTTGACTTGTTTGCA
ACTCAGGCTAATGTTATTCACCTACACTGATATGATATCCAGGCTAATGA
TCGCcatttatcttttctttccaATCGTTTCACTGTTATTTTTATCGGCA
TCAACATCACAGCTGTTTGAAGTGGGCCAGAAGATTCGTTGCTTTGTTCA
AGGTCTTCAAGTTGACGTCATCGATCTAGACACTAAAGTGGAGTTGGATT
TACTGCTCTTTCACATTGGATCAGACCCTGTTGTCATGACAATATGGAAG
ATGATACCACTTAATCGATCTATTATCGTTTCCATTTTCATCAGTATTGT
GACGTATTTCACGATGCTACTTTCATTCTTGTGATGCTGGTTTGCTTAAT
ACTGTACTCAAATTTTGATATCACATTCTTCGCTCGTTATtgagctcttc
cagaaaaaaatg
Run BLAST on NCBI

transcript from alignment at sc0000333:198855..204006+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019652 ID=TCONS_00019652|Name=TCONS_00019652|organism=Clytia hemisphaerica|type=transcript|length=5152bp|location=Sequence derived from alignment at sc0000333:198855..204006+ (Clytia hemisphaerica)
GTGGTTTTTCACTGTTTAAATTTTAGGTCGCCAAATGATTCGAAAAAGTC
GTTTCTTCTTGGCAAAACTCATTATCACAATCCTGATATACGTTAGTGCT
TTTATGACAATGATCTACAAATACCCAGATAATTTCCTGTACAAAAGCTT
GGAGAAGAATTACCTGCCATCTCTATGTAAAATTTTGATCATGATCCCGT
TCGTAACAGGTTTGGTTCTACCTTTAGCGTTGTTTACAATCCTTTGCAAT
GCATTAACGTACACATTTAAAGGATTCTATGATGCATTGCAACATCACCA
GGCAAGCAAAGGTTTATGCTGTAAGAAGTTTATCAAAGGCATACGAACAA
GTTACCTCAGGTAAAAACTtacatatgtttttttttcggagAGAATTGAG
TGGTATTATTATTAAAAAGTTTGTAAAACAACATTGGGCTGTTCAAGTAA
ATCGTCAAagagggtggacgaaccttttcaagacaaaaaaaaatcctGGA
AACATGTGGATGCCCCCtggaaaatgggaaaatttgcaaaagaaccattg
gaaaaatcattttcatatcttaaagtgagggtgaacgaactaaaatcagt
ctttttatcccctgaaaaaaaaaaatactcctttaagaccccctggaaat
tctacTCAGATTACCCCCtgcatggatataaaatggccCATTAAAACAAC
GTATAATAACGTATACGTATATAACTCATACTCATACTATATACAACATG
TATAAACAATGCGttaggtcgtgggttcaatccccagccTGGTCATACCC
AAGACTTCGTACTTAGtacaaaaaagtacaaaaagacgCCTCTCTGCTTG
AAGCTCCGCAATTGAAGAGAATGATCAAGAGTTAGAGGAGCAATgcgtca
aaaacttcaaaaaatcgaaattatgCGAGCCTCGATTAACGTAGTCTAGT
ATATTGAGATTAGCCTATAAGAAGATTCTACTATGGCCTTAATCCTTGAC
AAAAGGGGAtttctcaaaatcttaaaaCCAAAATGATTGGAAAGTGAAGC
TTTAGCTCTGAGTTTTAAacgtcacagacccgctgggaccccagcccaac
tGCAAACTTTTATCCCTGTTGGGAAagataccctagaatttcagctccac
tgggaaattgactttgtttttatcccaattcgaaattcaattaaaaaatt
acactccaaaaccatcccaacgGATTTTTTGTACACTGAGtttcagaggt
taagttttcaaagaatatactaacctctgaagaccaataatagaaatttt
atcgcgcatgtgtcaatctaatcactgtagaaaaatcaaagatgaagagc
aaatattaccaTATTAATGTCTAGCAGGAGACGATATCAGTATACATGTT
TACTATTGACGAATTCCCCAGCGAAACTTCCAAGTGTAAtcgaaatgagt
ttctttcaaaagaaatcttctacatgattcccaaatgtataacagtaatt
actaaattATTAATTATGGTAATACTAATTCAATGGGATCGTAATAATAG
AGAAATCTTGTGTtacgattctctatcactgactctttttaaaaagcgtt
gatgacatttctgagttGTAATCAACGACGGGAATAGATATATCGACTAT
Gaccctcatccaagatcttggatgtcgtcatggttacttttctctgcgtt
gattgcgcgctgaatagaaactcgattggtcggcacaggtcaatatatga
ttttggccTGTGCTTTTCAAGGTAGATTTTTTGACCTGGGAACAATAAAA
TATCTATTcctattgggatttcaatagaaatctTTATCACCGCTTGGGAA
CAggttccactggggctgtgaggcagggctgtttttaacattagacttaa
aatTTAGGAACTTAAGATTTCAGGATCTAAAATGATCTAAAATGATCCAA
TAGATAAGGCTTAGAATATATTCTAGTAAAGCCGATAAAACCCCCCTAAG
AAAAACCCAATGACAAAAAGTAGAAGTGCTGAAATCACCATTCTCAcctg
aacttgaaattttgatcaacgaaaaaatactcaaaaatgctATTTTATTT
TGAGCAGTACAGTGGATCTCTTtatttcgaacctctataactcgaatgcc
tCCTTAGCTCGAACAAGTTTTGTGGTCCAAATGCATTATAAATcttactc
gaaatttccttaaatcGAAAATATTTCTGTTCCCCGTCCGAGTTCCAGTT
ATGGAGACTTCATCGTATTTTAGTTTCCTTCCCAAGTGGAGATTTGAGAA
ATATAATGCAGGAGTGCTTTCAATAGTGCTCGAATcttggtcgaaatata
ttgaaatttttagtgtatttaaaagtttttcagaatttagagTTTGGCTA
TTTTAGTACTTCCTCTTTATTTCATTGAATATTCCAATTAAAAggtttga
gcttttaaatcctgagactCTAACGTTTTActagtcttaagtctcatgtt
aaaattCAGACCTAAAACTGTATTTTTATTACTATTTTATTACAGACTGA
CCATTCTCTGTGAAGATTTTGATGACATGTTTTCACTAATGCTGATGTTC
TCTTACCTCATTGATGTTGTGTTGACTTGTTTGCAACTCAGGCTAATGTT
ATTCACCTACACTGATATGATATCCAGGCTAATGATCGCcatttatcttt
tctttccaATCGTTTCACTGTTATTTTTATCGGCATCAACATCACAGCTG
TTTGAAGTGGTAGGTTTTTACTGTACTGCAACCCAATATTATTTCGTACA
TCtgaaatgaatgaataaataatGGAGTGGCGGCTTTATGTGAGCCGAAA
TAACGATTTTCTATCAAAAGgtgctattcatgatattcctgacataatgt
tttctacggaaagacccggtttttgccagtagtggcaaattctatacaac
ttttgtctagtttaaatttgccactactggttAAAACTGGGGTATTTCCG
taaaaaaacattacgtcatgaatatcatgaatcgtTTCTTGATCCTTTAT
TGTTAAATTCGAGGTATTTTGAATAACAGCTAGACGATAAATATTTCTTT
AtcatttattttctatttcccCCAATCTAACTTCACGTATTTGATCATAG
TTcgtaaaaaaccccggtctgcaagccttttgtttctttccattgttccc
tacttgaacttgcgtttgagaaattagtttgttttgctcgctttttgatc
atgtgattaaatcttaaaccaattcCAAGAGGAATAAATACTTGGTatcg
tgatcaaaaactgagcaaatcgattttcatcttttgatattaacaaagga
aaaagctatcAAAAAGCTTTCAGACCAGAGTTTTTTTACGGACTatgatt
tgattgaaatttcaaCAATCCGATACCaaataatgatttttcaaaGTGAA
TTTAATAGAATATCTCACGCTTATAACAGGGCCAGAAGATTCGTTGCTTT
GTTCAAGGTCTTCAAGTTGACGTCATCGATCTAGACACTAAAGTGGAGGT
AAAGTATTTTAGGCACacaaactttcgcaagcagaaagtttcgcgaggtc
gaaaaatcgcgaaatttacgatATTTACTTTCGcggatttgaagaaaaaa
tgtttttcccgAGCATAAATcgtttgaataaaaatgaaatttttcaaatg
aaaattgccttaaaattgaaaacattCCTTAAATTCGATAAAGACGGTTG
CTCTTCAACTTTAAAAGGCATTAAAGGATAGAGTAGTAGTCAAAGATATC
CTGCTTTTGCGGAACAAATGATTTAATTACATGCAAGAAACCAGTTTAGT
AACCAGAAGAACAACTATGAGAATCCCTTGAACTCCAACGGCCGttaaaa
aattgttcaagaTCTAAAAACTTCCACTAATATGTTTTTCGTTGCTTTTC
AGTTGGATTTACTGCTCTTTCACATTGGATCAGACCCTGTTGTCATGACA
ATATGGAAGATGATACCACTTAATCGATCTATTATCGTTTCCGTAAGTTC
TGTAAACACAATTTAGCGGGGTTTAGGGAAAGGTCCGACTCGGAGGGCTG
CGAGTTCGAAATAGACCGGGGATAGGCCATGTAGTGAGGTCACCTCTAGG
GTCGCCTTTTGACCAAGGTGGCGGTTCCAGGTCCCATAATAAGAGACAGA
TCATTGGaagaagaaataaaacaaaaaaatgttgcaaaaaaaaattacta
aatggaatttcaaattcaatatcGAAAGTGATTTTTCTTCTTCGCGCTTT
TGTGAAATTTCGGTTAGAAACTAAGTAGGCTACTCTACTCACCTTTTATc
aaaaagagtttcttataggaaaTATACCTATAATAGAGGTTTGCGATTCG
GACTATGCAATAAGAAACAAATTTATAAAGACTCAATACCGTATTCCGTT
TGCTCGTTGTTGAACATTTCTGTATTTGAGTCTTTGAATCTTCATGATTG
GTCCTCATAGCATTGCTTCTTTCTTTCTTAACTGAAAATACAAAAACGCA
TATAAAGTAAAGCTGTATTATTTATAAATAAAAGGATGCTTTAAATTTTA
GCTTatagaatttcaattttattttttcgcaaCCGAAAAAACGGGACTCT
CTTAAATGATACAAATTgccattttaaaatgtttaaaaacgACAAACTCG
AACCCAAGTCTCTTTAAATTCACCTTTTTCATGATTCTGATAGCCTTCAC
GAAATGTTTGCACCAGTAAAAGCAAGCGTAGCTCTTGGAGACGGGATTGA
CGAGATTGGAAAAACGGTCAATAAAGTTCCTTATATTGGGATTCAAAAAA
GTAGTTTAGTTGTCTggattttagtttttagttCATTAAAATAGCTGCCC
CCCCACtgattaatttttcgaaaattttccacccaggacattcttattcc
accccctcgctttttaagattttttccaaccccctggcTATTAGTATACA
GTATCTTACTACTTTTCTTTTAGATTTTCATCAGTATTGTGACGTATTTC
ACGATGCTACTTTCATTCTTGTGATGCTGGTTTGCTTAATACTGTACTCA
AATTTTGATATCACATTCTTCGCTCGTTATtgagctcttccagaaaaaaa
tg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011062XLOC_011062Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019652-exon-sc0000333-1491911889:198855..199214TCONS_00019652-exon-sc0000333-1491911889:198855..199214Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1510915933:198855..199214TCONS_00019652-exon-sc0000333-1510915933:198855..199214Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1575043694:198855..199214TCONS_00019652-exon-sc0000333-1575043694:198855..199214Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1491911889:201400..201613TCONS_00019652-exon-sc0000333-1491911889:201400..201613Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1510915933:201400..201613TCONS_00019652-exon-sc0000333-1510915933:201400..201613Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1575043694:201400..201613TCONS_00019652-exon-sc0000333-1575043694:201400..201613Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1491911889:202334..202402TCONS_00019652-exon-sc0000333-1491911889:202334..202402Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1510915933:202334..202402TCONS_00019652-exon-sc0000333-1510915933:202334..202402Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1575043694:202334..202402TCONS_00019652-exon-sc0000333-1575043694:202334..202402Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1491911889:202807..202896TCONS_00019652-exon-sc0000333-1491911889:202807..202896Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1510915933:202807..202896TCONS_00019652-exon-sc0000333-1510915933:202807..202896Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1575043694:202807..202896TCONS_00019652-exon-sc0000333-1575043694:202807..202896Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1491911889:203878..204006TCONS_00019652-exon-sc0000333-1491911889:203878..204006Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1510915933:203878..204006TCONS_00019652-exon-sc0000333-1510915933:203878..204006Clytia hemisphaericaexon
TCONS_00019652-exon-sc0000333-1575043694:203878..204006TCONS_00019652-exon-sc0000333-1575043694:203878..204006Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:198855..204006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32835	1.63065	0.824105	0.433535	0	0	0	0.011184	0	0.16165	0.055044	0	0.877508	0.0674682	0.0651958	0	0	0	0	0	0	0.149902	2.91958	1.6534	0.133644	0.218706	1.34331	1.18772	1.21743	1.69855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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