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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019650 ID=TCONS_00019650|Name=TCONS_00019650|organism=Clytia hemisphaerica|type=transcript|length=4561bpRun BLAST on NCBI protein sequence of TCONS_00019650-protein >TCONS_00019650-protein ID=TCONS_00019650-protein|Name=TCONS_00019650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=850bp MSEKKSKRVPKRKVLYDDEITEVEIPTIKTTKKKKKEPKQTTPPIKIKIKRun BLAST on NCBI transcript from alignment at sc0000333:37490..51092+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019650 ID=TCONS_00019650|Name=TCONS_00019650|organism=Clytia hemisphaerica|type=transcript|length=13603bp|location=Sequence derived from alignment at sc0000333:37490..51092+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000333:37490..51092+ >TCONS_00019650 ID=TCONS_00019650|Name=TCONS_00019650|organism=Clytia hemisphaerica|type=CDS|length=45954bp|location=Sequence derived from alignment at sc0000333:37490..51092+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019650 vs. Swiss-Prot (Human)
Match: KDM1B (Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=3) HSP 1 Score: 599.356 bits (1544), Expect = 0.000e+0 Identity = 317/777 (40.80%), Postives = 468/777 (60.23%), Query Frame = 3
Query: 366 KCPKMSCTSGHMVCF-----RCSNEGHSARWYHMSDAEHFCNNCFDFFYRSHKKGHLEEFEPWKTLWSASCRREGPLKLFMQEETVPFWAQCN--ECEKWRQLGYGEEINKEFNENFVCSMIDEM--------ECSDEENIYVKDYKQYEWLKTLVHPPFLKNSPASPFLKDFYYDGIGLSXXXXXXXXXXX----------------------FMENLIPFYSPEDSEKARCICADVMTGEEREEFKHHIKDASIFLGLRNLIIAMWNINPKQYLTYHVCRNRLICRGIGRLTLAEELKKVLDFLTINGYVNFGILNRVPTHFNL--NYWTGSXXXXXXXXXXXXXXRQLTNAGCKVTVLEASDRCGGRLKDDHSL-GNCIGLGAQILTGCINNPLYVMCEQVSLPLRYLGMRCDLIDDKGALIDTPIDQEIEFRFNLMLDSLEDWKQTISNRERDSYSLSEA-LAEQLKELQKSLCKD----MTQMEKNLLEFHLGNLEYGCGSSLQNVSALHWNQNENYPQYSGAHAWAIDGFERIVTSLADGLDVRLNSPVASITYTNKNTCEVKTKSGKTLKADKIVCALPLSTYQSKFVEFDPELPKDKLKAIGRLGAGLIEKIALKFPTAFWRNKIGDADYFGHVPGTSEDRGMFSVFYDV-SREDDFILMTVLAGEAVKRRNEMTDQELVDKCMSTLRKIFTGETVPDPTAQIISHWGDDTYTRMAYSYVKVGSSGQDLDILANTVNEKLYFAGEATNRQFPQTVTGAYLSGLREAKKI 2558
KC K CT+ VCF RC+ G+++RWYH+S EHFCN CFD +YRSHK G+ +++ WK +W+++ + E K FM ++ +P+W QC EC KWRQL ++ + + + C M CS E++ V + + W L+ PP LK+S A+P L +Y D +G+SP PFY P + KA C+ DVM +E EF + +D +++L LRNLI+A+W N K+ LT C +I RG+ R+ +E++++L F+T G +N G+L+ + L +Y SVI++GAG AG+ AARQL N G KVTVLEA DR GGR+ DD S G +G GAQI+ GCINNP+ +MCEQ+ + + G RCDLI + G + D ID+ ++F FN +LD + +W+ +D L + L E+++E+ K+ K+ +++E +L+FHL NLEY CGS+L VSA W+ NE + Q++G H G+ I+ LA+GLD++L SPV I Y+ + +V T G A K++ +PL+ Q ++F+P L + K+KAI LGAG+IEKIAL+FP FW +K+ AD+FGHVP ++ RG+F+VFYD+ ++ +LM+V+AGEAV + D++++ +CM+TLR++F + VPDPT ++ W D + +MAYS+VK G SG+ DI+A + ++FAGEATNR FPQTVTGAYLSG+REA KI
Sbjct: 52 KCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRSHKDGY-DKYTTWKKIWTSNGKTEPSPKAFMADQQLPYWVQCTKPECRKWRQLTKEIQLTPQIAKTYRCGMKPNTAIKPETSDHCSLPEDLRVLEVSNHWWYSMLILPPLLKDSVAAPLLSAYYPDCVGMSPSCTSTNRAAATGNASPGKLEHSKAALSVHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRDPTMYLALRNLILALWYTNCKEALTPQKCIPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNALLDVVSEWR-------KDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSG-DEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 819 The following BLAST results are available for this feature:
BLAST of TCONS_00019650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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