TCONS_00019648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019648
Unique NameTCONS_00019648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019648 ID=TCONS_00019648|Name=TCONS_00019648|organism=Clytia hemisphaerica|type=transcript|length=491bp
ccggggggttggaaaaaaatcgaaaaattaacaagtgggtggggggcgtt
tatttggcacctaagagtagatCTCTTGGTATACTTCATTCGGAGCCGTA
CAAGAGTACGGGGAAGTTGGATATTTCCTTCCTTCACGCGGGTGTTCTTT
GTTGTCTAGCAATAGAAGTACTTTGCCATAATGAAATGTTAATAAACTTT
AGCATACTGTTAGTCATGAGGTATGAGTTCTGTTTTATAGTATTCGGTCA
TTTCTAGATTCCTCGGAACTGAAAATAGCACTGTATGCGCACTTTACTTA
GACCATgctcagacgttacggttttgTATCGTTCCTATATGGCTtccgtt
acggatcgagagtgttcatattgttttcggaacgtttcggagtaATAAAA
AGGAGAAGTTTCGTttcgatgaaaatagtggagcgaaaccgtttcgatct
gttttgctttgtaacgtcttctcttttgaagttttgaattt
Run BLAST on NCBI

transcript from alignment at sc0000332:169221..169711

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019648 ID=TCONS_00019648|Name=TCONS_00019648|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000332:169221..169711 (Clytia hemisphaerica)
aaattcaaaacttcaaaagagaagacgttacaaagcaaaacagatcgaaa
cggtttcgctccactattttcatcgaaACGAAACTTCTCCTTTTTATtac
tccgaaacgttccgaaaacaatatgaacactctcgatccgtaacggaAGC
CATATAGGAACGATAcaaaaccgtaacgtctgagcATGGTCTAAGTAAAG
TGCGCATACAGTGCTATTTTCAGTTCCGAGGAATCTAGAAATGACCGAAT
ACTATAAAACAGAACTCATACCTCATGACTAACAGTATGCTAAAGTTTAT
TAACATTTCATTATGGCAAAGTACTTCTATTGCTAGACAACAAAGAACAC
CCGCGTGAAGGAAGGAAATATCCAACTTCCCCGTACTCTTGTACGGCTCC
GAATGAAGTATACCAAGAGatctactcttaggtgccaaataaacgccccc
cacccacttgttaatttttcgatttttttccaaccccccgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011059XLOC_011059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019648-exon-sc0000332-1491911889:169221..169711TCONS_00019648-exon-sc0000332-1491911889:169221..169711Clytia hemisphaericaexon
TCONS_00019648-exon-sc0000332-1510915933:169221..169711TCONS_00019648-exon-sc0000332-1510915933:169221..169711Clytia hemisphaericaexon
TCONS_00019648-exon-sc0000332-1575043694:169221..169711TCONS_00019648-exon-sc0000332-1575043694:169221..169711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:169221..169711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127053	0.146763	0.627856	0.196669	0.172493	0	0.664972	0.157016	0	0	0	0.169616	1.33923	0.52995	0.760211	0.274989	1.27731	1.29838	0.139303	0.149168	1.01984	1.48024	0.770167	0.666049	0.69834	1.1028	8.81978	3.28823	3.59297	2.62017
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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