TCONS_00019644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019644
Unique NameTCONS_00019644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019644 ID=TCONS_00019644|Name=TCONS_00019644|organism=Clytia hemisphaerica|type=transcript|length=355bp
GCCAGATATTCTCCGGCttccatcagtaacgtaaataaagcctaggATAC
ACGGAGACGAGGTTGTTAgattttcatctttagctttGCTGTCATTGAGG
TGAAAATGAATGATTTCCATTAGTTTAGGCTAAAAAgaatcaaacaaaca
aacaaatgaaacaaatcgTTGATCTAATTGGGCAATACTCTgattaaatt
attattttgatagTTTTGTTAATAGAGATATTCTGTATAATATTGTAGCA
AAATTTAAGACAAAGATAATAAAGAAAAGTTAAATTTTAATTATGAATTT
attaatttaaaggttttgtttttaaataagagtgatatcgtttgcttact
catca
Run BLAST on NCBI

transcript from alignment at sc0000332:118586..118940

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019644 ID=TCONS_00019644|Name=TCONS_00019644|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0000332:118586..118940 (Clytia hemisphaerica)
tgatgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaaa
ttaatAAATTCATAATTAAAATTTAACTTTTCTTTATTATCTTTGTCTTA
AATTTTGCTACAATATTATACAGAATATCTCTATTAACAAAActatcaaa
ataataatttaatcAGAGTATTGCCCAATTAGATCAAcgatttgtttcat
ttgtttgtttgtttgattcTTTTTAGCCTAAACTAATGGAAATCATTCAT
TTTCACCTCAATGACAGCaaagctaaagatgaaaatcTAACAACCTCGTC
TCCGTGTATcctaggctttatttacgttactgatggaaGCCGGAGAATAT
CTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011055XLOC_011055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019644-exon-sc0000332-1491911889:118586..118940TCONS_00019644-exon-sc0000332-1491911889:118586..118940Clytia hemisphaericaexon
TCONS_00019644-exon-sc0000332-1510915933:118586..118940TCONS_00019644-exon-sc0000332-1510915933:118586..118940Clytia hemisphaericaexon
TCONS_00019644-exon-sc0000332-1575043694:118586..118940TCONS_00019644-exon-sc0000332-1575043694:118586..118940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:118586..118940 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.387805	0.419264	0	0.259998	0.939353	1.52828	0.205792	0.253884	0.24897	0.486574	1.13697	1.07108	0.857628	0.596031	4.04552	2.62859	2.08826	4.62591	3.185	1.78857	0.560751	0.508049	0	0.233171	3.02586	1.2334	0.858195	0.281047
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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