TCONS_00019602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019602
Unique NameTCONS_00019602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019602 ID=TCONS_00019602|Name=TCONS_00019602|organism=Clytia hemisphaerica|type=transcript|length=296bp
gtaataaagatagatggagaatcaatgccttttgttctattctgatttat
catcggaagcaaacagctgtttggttgctttgggaataagatgattaatt
tgtCGCCCATGTCTCACAAATTCCAGAAACCTTTGCTGTCGTCAAGTAAC
CACAACCTCCACGTTCGTGTCACAACAAACAAAACGCCAATTCAAAATAT
TCCACAATGTCAACTGTAAAAGCAAATACGTCATCTACCTACTAGAATGT
CAAATCTGCAAGATCCAATACGTCGGTAAAACTGAAACACCCTTNN
Run BLAST on NCBI

transcript from alignment at sc0000331:250779..251074

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019602 ID=TCONS_00019602|Name=TCONS_00019602|organism=Clytia hemisphaerica|type=transcript|length=296bp|location=Sequence derived from alignment at sc0000331:250779..251074 (Clytia hemisphaerica)
NNAAGGGTGTTTCAGTTTTACCGACGTATTGGATCTTGCAGATTTGACAT
TCTAGTAGGTAGATGACGTATTTGCTTTTACAGTTGACATTGTGGAATAT
TTTGAATTGGCGTTTTGTTTGTTGTGACACGAACGTGGAGGTTGTGGTTA
CTTGACGACAGCAAAGGTTTCTGGAATTTGTGAGACATGGGCGacaaatt
aatcatcttattcccaaagcaaccaaacagctgtttgcttccgatgataa
atcagaatagaacaaaaggcattgattctccatctatctttattac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011026XLOC_011026Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019602-exon-sc0000331-1491911889:250779..251074TCONS_00019602-exon-sc0000331-1491911889:250779..251074Clytia hemisphaericaexon
TCONS_00019602-exon-sc0000331-1510915933:250779..251074TCONS_00019602-exon-sc0000331-1510915933:250779..251074Clytia hemisphaericaexon
TCONS_00019602-exon-sc0000331-1575043694:250779..251074TCONS_00019602-exon-sc0000331-1575043694:250779..251074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:250779..251074 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.59635	1.33711	6.23201	2.47426	4.83538	5.6249	11.6468	12.4753	3.02532	5.25851	2.87742	3.62951	4.06366	6.95094	5.087	1.88849	3.41897	4.12377	2.47071	5.33527	6.49772	4.59954	0.5065	2.42504	1.64526	1.16125	7.50167	0	1.15727	0.981669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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