TCONS_00019564 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019564
Unique Name	TCONS_00019564
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	638

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000331:97001..101035+

transcript sequence

>TCONS_00019564 ID=TCONS_00019564|Name=TCONS_00019564|organism=Clytia hemisphaerica|type=transcript|length=638bp
CTATGCTGTGGCCAGAAAACTGGACAGGTTGTTTTACACGATCCCCAATC
TTTGGAGGTTTGCCATAAATTGGAAGCACATTCTGGATCACTATCAGATT
TCGATTTCAATGGAAATCTTCTGGTTACTACTGGTTTCTCAAAAAGgtaC
AATCATCTGATTGTTGACCCTTACTTAATGGTTTATGACTTACGCACACT
GAGAGCTTTCCCACCTGTTCAGATGCCGATTGAACCATATTTTGTGCGCT
TCTTACCGACATACACTTTGAGATGTCTTGTTTTGTCATTGAGTGGGCAA
TTTGTAATTTGTCAACCAGAGAGTCTGGTGGTAGATCCCGGCCTTTACCA
ACTCAATAACCAAGGTTCCATTATGGATGTGTGTATATCGGATACTTATC
AATGTCTTGGGATTGGAGATGACGCAGGTTTCGTCCATTTGTGGGCAGAT
CGAGACGAAGAGCAAGTCACGTTCAATCATCAATCACAAGAAACTGTCTT
CCCTGATGAGcttcaacattttGATGCGTTTGACATCGATGATTGGTCGA
TTTCGTTGAGTAAAATACCCATGCCTCAATGCTCAGAACCTTTACTATCT
GATTGGCCAGAGCATTTAACCAAAAGAAATGATAGGTA

Run BLAST on NCBI

transcript from alignment at sc0000331:97001..101035+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019564 ID=TCONS_00019564|Name=TCONS_00019564|organism=Clytia hemisphaerica|type=transcript|length=4035bp|location=Sequence derived from alignment at sc0000331:97001..101035+ (Clytia hemisphaerica)
CTATGCTGTGGCCAGAAAACTGGACAGGTATGATAGTGTGTTTAATTTTA
ATCTATAAAAAACACAACTTTATGTTGGTCCTTTAGTTTTAACACATACA
GGGACAAGATTTGCAACTAGAGAAAAAACAAGATGGTTACATTGACAATA
TTTGTGACTTTCCAAACGATATGCCACACCTGAAAATCCAACCGGTCTTG
AGGTAGTTCTTAAATGCCTGGTAAAAACTGACCAAAAGGCTGCTGCAGAT
TAGGTTGATTAAGCAGACACTTTAAAGCGTCTATTTCAACAATCGGACTG
GTCCCAGACCATTCTTGATTGACCAGTCATCAttactttaaaaaatttgt
tttaatgTCATCATTACCAACAAACACAAAAtggtaaataaaaaataccG
GGAATGTTAAATCAACAGGCTGTCTGCGACTAGTTAAGAGCAGCAAGGAC
CAGCAaaactcaaatttcttttctagTTTGAAGACggcttcaaaacaaaa
ctggGTTCAAATTCTCAATTTTGTTGCTATTATGTCACTCTTTATATTGT
ACCAAGGCAAGTCCtattttcaggtacttaaaattgcttggggagtcaca
ttttCTGTTTGCAATCAACTGTTGTTGCTAAAAAACCTGATTTTAAAGAT
CGAATGAAAATCCAATCTTGGTACTATAGGCTTAAGAGTTAGCCAATCAT
TAACCtctatttgatttaaaaatcaagCTATTACTTGAGACTAGCATCCC
AATAATATCGTCAACAATCAATCGGTAGTTTATATTTAATCTTGGTCTCA
CTGTTGAAAACAGTGCAAAATTTATTCAGATCAGTGAAAATTACAAAGTC
GAAGTATAAAATTTTGCTTTACCAATTACAGGTTGTTTTACACGATCCCC
AATCTTTGGAGGTTTGCCATAAATTGGAAGCACATTCTGGATCACTATCA
GATTTCGATTTCAATGGAAATCTTCTGGTTACTACTGGTTTCTCAAAAAG
GTTTGTGTTGTGTCAATTGTTGGGTTTTCTAAACATTTGCGCatttaaat
ctatttttatccGACCCATTTCATTGCAATTATTAACCAGGCTACTTACT
GTGCAAAAGCTACGTCTGGTTGCTCTGACTGACACCATTAATGCCTTCTT
CTCTAGTCAAAATGATATGTATTCCCAAAAGATCATAATTACTAATGATA
CCAAAACTCAAACCTTCATCAATGTATTCAATACTTTGAACAGAGGTTTC
CGATGATTTTATGCATTTCAAGAATTACGTATTTGCGTTTTATCAGTTTT
AATATATGAGAAATTATAAAttgattatttcaaaattttaggtaCAATCA
TCTGATTGTTGACCCTTACTTAATGGTTTATGACTTACGCACACTGAGAG
CTTTCCCACCTGTTCAGGTATGTGGCAACTTTTCTTCGTATCTCAAATCA
TTTTAACCTCCCTTTTTTTTCTAATGGTTCTTCCATCTCAAAATTCGGCA
AAATTTAATAAAGAGTCTGGGCTAATTTAGTAACCCTTGTGTAATTTTTG
TTTGagaagaaaatttcaactttgacCACTTCTTTATTGCATATAGTTTT
TTTAACAAGGGGCTCTTCGAAAAAATGTCTGTATATGGGGGGTGGaagat
atagtgtccgggggtagtgaaaaatctacaaaatttaccttgtcctgggg
gtaaatttgctctgtttgggggtaatttcgCCCTGTTTGAGGGTGANtgg
ggggggggggggtgtcaaAAGTCATAATGTCACAatgaaatgttatatcc
tccacccaccacattcaatttttttctggaaaggcCAAGTTGATTGGGTG
CTTCTTAAAAAGAAAGGATAAGTTTAACAAGCTTAGAAATAATTAgtctg
ttagacgaaaaccacTTTTTTATCGCGTTTTAGcataaaacaaataaaca
atTTGCTTTTCGGAAGGTACTGGCTAATAAATAACACAATTGTCACATTG
TTCCTCTTCAGATGCCGATTGAACCATATTTTGTGCGCTTCTTACCGACA
TACACTTTGAGATGTCTTGTTTTGTCATTGGTAAGCATTACATTATCACC
CATTGTACAAGAAGAAACATAACCAAaaatagactggagtcgtttataat
agTGTAATACAGAAATAATCGAATTAATGTGATGATTTTTATAGGCGATA
AGGTACCCGGTTAAGATTTTAATTTCTCGTCAGGAATATTGAAAATCGAG
ATGAACATTGAAGTCTTTTTCAATGGCATTCGTCAAGTAATGTCTGCTTG
AACCTGTGAATTAAACCCTATTGAATTAATTTCAAATAAACTGAAATAAA
TCAAATCTTGTGTCTTCATACTTCTTAGAGTGGGCAATTTGTAATTTGTC
AACCAGAGAGTCTGGTGGTAGATCCCGGCCTTTACCAACTCAATAACCAA
GGTTCCATTATGGATGTGTGTATATCGGATACTTATCAATGTCTTGGGAT
TGGAGATGACGCAGGTTTGAGTCCCAGGATGTTTTTAATTCCCTCTCAAA
GACATTACATAAATCGGCATTCaagcaatttaaatttttgtacTTTGAAT
TTTATTTGTAATGCAACCGAAGTTTATAGATACAAAAATCTATCAAAAGG
AATCTCAGCtagtaatgtttaaaaataacaGTACGCAGGAGCTAGGTCAC
AAAATTCAGTTAACGGTTCGTTCTGAGCAAGCCCAATCTGTATAAAACAA
TGATTAGGATTACAAAAGGAGGAATCATATAATCATGTTACAATGAACAA
GAATGACCCTTCAAGTTCAAGGACAAATATTAAGTTCTTGATAATAAGTA
CTTCTAATACAGTATAGTCTCGAAACTCCTACAACTGGAATACCTCTTTA
GCTCGAACTAGACAAGTTTATCTGATCCCTTTACGTAATAAATCCACATA
AACAAGTACccataatgtttttaaattttctcttttcttcatTATTTAAC
GTTTTCATGTGTTTGATGTTCTGCATTCTTTGAAGGTTTCGTCCATTTGT
GGGCAGATCGAGACGAAGAGCAAGTCACGTTCAATCATCAATCACAAGAA
ACTGTCTTCCCTGATGAGGTATTAAATGAACACCATCAGCGCTAATACTT
TTGAACATGACCACATGATGCAATAGTGAATCGCCTTTAAGAAAGCTTTA
TTGAAAGTATTGaagcaaaaaataaagaaataaaaaactaactgaagaaa
aaaatttgaacgaAATTTTTGAGGCTCGCCATCTATGAAATATTCTCAGC
ATTGTAATTCTCATAAAGTGAAAAAAGGTGTAAATAGGTAGAACATTCGG
CTACGGTCCACAAAGTGCGTTGTCCCTGGGGAAATCCTCCTCTGCCTCTT
GGTAGACAGCTAAGAAAAAGGAGGCTTCGacctgcggtcgcaaacttact
taatcatctttttttgatttttcctgtATTTCATGTTATATATTCAATAG
ATATATAGAAAGAAGTGCGTTATAGTTCCTTAGTATACCAagactttcga
tttcttttccagcttcaacattttGATGCGTTTGACATCGATGATTGGTC
GATTTCGTTGAGTAAAATACCCATGCCTCAATGCTCGTAAGTTAAATCTA
TTCTTGGATGAGTCTTGGTTCTCTCAAATAAAGTTCAATAAGAGTCTATA
TTTTAGCAGAGTATCCTTCTCAGACCTTTATTTATATTACACTTCTTGAT
AAAGGATGAAATGCATCATGCTACAGTGTAAATTTCTTAAATCTTGTTGC
ACAGAAACTCATATTTCTCCCTATAGGTCTGCTATAATTTTCAACTTCCA
TAGACGTTTCTCTCACTTTATCTTTTTCGTCAAAAACGAGAACTAATACG
GATAACATAATTGAATTTAGCGGAAACGCTTAATCATGCTTGTTTTGTTT
AGTTGAGCCGAGTTTGGTAATTTATTTCTAGAGAACCTTTACTATCTGAT
TGGCCAGAGCATTTAACCAAAAGAAATGATAGGTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010997	XLOC_010997	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000331	supercontig	sc0000331:97001..101035 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.21863	2.89352	0.26218	0.674234	5.09887	0.00353335	0	6.12355	1.02303	0.179448	3.47875	1.53554	1.28041	0	2.28033	6.54319	4.09739	7.33037	2.36304	1.70229e-08	2.61942	0.468007	2.50327	0.320677	6.90786	4.64046	1.54673	2.16867	1.06843	2.24445

Blast

[Close]

BLAST of TCONS_00019564 vs. Swiss-Prot (Human)
Match: PAN2 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 OS=Homo sapiens GN=PAN2 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 6.216e-43
Identity = 89/205 (43.41%), Postives = 121/205 (59.02%), Query Frame = 1

Query:    7 CGQKTGQVVLHDPQSLEVCHKLEAHSGSLSDFDFNGNLLVTTGFSKRYNHLIVDPYLMVYDLRTLRAFPPVQMPIEPYFVRFLPTYTLRCLVLSLSGQFVICQPESLVVDPGLYQLNNQGS-IMDVCISDTYQCLGIGDDAGFVHLWADRDEEQVTFNHQSQETVFPDELQHFDAFDIDDWS---ISLSKIPMPQCSEPLLSDWP 609
            CG  +G+V L D ++ +V H+ +A SGSLSDFD +GNLL   GFS R   L  D +L VYDLR +RA  P+Q+ ++P F+RF+PTYT R  ++S SGQ   C+P  L     ++ +N  G  +M   +S + Q L  GD  G VHLW D  E   +FN  S+ET F       D+    DWS   + LS IP+P  ++ LLSDWP
Sbjct:  211 CGHTSGKVSLRDLRTFKVEHEFDAFSGSLSDFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRLAIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDSPEP--SFNPYSRETEFALPCL-VDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWP 412

The following BLAST results are available for this feature:

BLAST of TCONS_00019564 vs. Swiss-Prot (Human)

BLAST of TCONS_00019564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PAN2	6.216e-43	43.41	PAN2-PAN3 deadenylation complex catalytic subunit ...	[more]

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TCONS_00019564 (transcript) - C. hemisphaerica