TCONS_00019554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019554
Unique NameTCONS_00019554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2046

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019554 ID=TCONS_00019554|Name=TCONS_00019554|organism=Clytia hemisphaerica|type=transcript|length=2046bp
gacgtcaaatgagcttagtaaagctcaaattgcagatgtagacaATAAGC
TTGGTATACAAGTAATGAACAAATTGAAAGTAtatcgaatgcaattaaaa
acaAATCATTAGGTACTATTTGTATTTTGGCTTGTGAAATACCatcagat
taaaaaaatttaacttatAGCACCACTACACTATGTGCAAAAGCATAGTA
TACAGGGGGCTTCCTTCATGATGaaatttacataaaatttcaaaaaaaga
agattgaaaggtTAACATTGAGGTTTGACATAACATTAAACCTTTTTTAG
ttcaaataaatgaaaacaaaatttcagtGTCGCTGTATGAATTGAATAAT
GGGTGGCAGTCAATCCGCATTCACTGTTGAAGAGCTAAAAGAATACCAAG
AACTTACATACTTCACTCAAAAAGAAATTCTACATTGTTTCAAGCGTTTT
CAACAGTTGGATCCCACTCTGGTCACGTACAATAATAAAAACCCACAATT
GCCACAAAAAACTATACTCAAATTACCAGAGCTTGAAGTGAATCCATTTC
GTGATCGAATCTGTAAAGTGTTCTCTTCTAGTCATGATGGAAACATGACT
TTTGAGGACTTTTTGGATATGATGTCAGTATTTTCAGAGAATGCTCCAAA
AACTGTTAAAGTGGAATATGCATTCCGTATTTATGATTTCAATGAGGATG
ATTACATTTGTGAAAGTGATTTGAAGCGTGTTATTGATCGATTATGTGGA
GAAGATGACAAACTTTCAAGTGAGGACACAAACAGCATTGTCAAGAAAAT
CTTGCTTGAGGCTGACTTGGATGATGATAATCAACTGTCGTTTGCAGAAT
TTGAACATGTCATATCTAAAGCCCCAGATTTCTTGAACGCTTTTAGAATT
cgtgtttaaagtttgttttccATTCAAGCGATTTTATTGACACTTGACCA
ATATATTTTCAAGATTGTATCATTTTTATTCTCCATAGTCTTTTAAAGCT
CAATTTCATTGACTAGACAGCTCAAAAATTCAATGGTGATTCTCAACATT
TTAGTGTTTAGTTATTTTTAGTGGTTTTTTGAGTCTTCAGAAAACAGACC
CTTATTAAAGCAGTGGGGTATAATATGATTTTAATCATCGATAAAATAAT
TGTAATCTTTTTCCTAATTTAATATGACTTTCTAGTTGGGATACTAACCT
cgcacaatttttttcttattgtttttattcttgggtgataatattttgat
aagtAGTTTTTAGTGAATCGTGTGTGTATAtaattgaatgaaaatttttt
gtaaaaccaCAGAAAGGACGTGTATAAATTTGCTTTTTATgtctaaatta
tttttttgtaaacataATCTTCAACAGGGATATTCTCTTTAAAAGAGAAA
TAGTCTTAATAATTATGTTTTATTCCAGATTTCAAACTACACAGTCAAGG
AGATATTTAAATAATGAATGGGTTAGAAAAATTATAATCCAATTATATTT
TTCTCTGTATCTTTGAACTTGATATTtattattttctgattttttttgtt
tctatagcaacatttttgctttgtttattttttgtgtaatttCAAATTTG
TACTTTTTATAATATGAATCTGATaattttatatcaaatttgaaGTACAA
TAAGTTCTGTCTTTTttgattgtttatttttattatgtGGATATTGGTTT
CTTCATGTACCAAAATCTTAGTTTCATGAATTTTCGTTATGAAAATTTCT
GGGAGATCTTTTTGGATTATTTGTTTCCTCTATTGCAGTTTTTTGAGGgt
tgtttttttagtttttggttTTACTTACGATTGTTTTAAAGTGTAAGCAT
TAGTCTTTTCTAATCAGACTCATTCTGAAACATTTAGCCAAAATTTTTCA
TACTGTaatatttttatgtttgttttgatttgttttgtaaACGTGTCTTT
TTTAAGGttatttgtgagtattttgatTGTCTTTTCAATTCCAAGTTGgt
gaaaagtttttgtttagGTAGACTCTTTCTTTATAACAAAACCAAT
Run BLAST on NCBI

protein sequence of TCONS_00019554-protein

>TCONS_00019554-protein ID=TCONS_00019554-protein|Name=TCONS_00019554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MGGSQSAFTVEELKEYQELTYFTQKEILHCFKRFQQLDPTLVTYNNKNPQ
LPQKTILKLPELEVNPFRDRICKVFSSSHDGNMTFEDFLDMMSVFSENAP
KTVKVEYAFRIYDFNEDDYICESDLKRVIDRLCGEDDKLSSEDTNSIVKK
ILLEADLDDDNQLSFAEFEHVISKAPDFLNAFRIRV
Run BLAST on NCBI

transcript from alignment at sc0000331:71623..73733+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019554 ID=TCONS_00019554|Name=TCONS_00019554|organism=Clytia hemisphaerica|type=transcript|length=2111bp|location=Sequence derived from alignment at sc0000331:71623..73733+ (Clytia hemisphaerica)
gacgtcaaatgagcttagtaaagctcaaattgcagatgtagacaATAAGC
TTGGTATACAAGTAATGAACAAATTGAAAGTAtatcgaatgcaattaaaa
acaAATCATTAGGTACTATTTGTATTTTGGCTTGTGAAATACCatcagat
taaaaaaatttaacttatAGCACCACTACACTATGTGCAAAAGCATAGTA
TACAGGGGGCTTCCTTCATGATGaaatttacataaaatttcaaaaaaaga
agattgaaaggtTAACATTGAGGTTTGACATAACATTAAACCTTTTTTAG
ttcaaataaatgaaaacaaaatttcagtGTCGCTGTATGAATTGAATAAT
GGGTGGCAGTCAATCCGCATTCACTGTTGAAGAGCTAAAAGAATACCAAG
AACTTACATACTTCACTCAAAAAGAAATTCTACATTGTTTCAAGCGTTTT
CAACAGTTGGATCCCACTCTGGTCACGTACAATAATAAAAACCCACAATT
GCCACAAAAAACTATACTCAAATTACCAGAGCTTGAAGTGAATCCATTTC
GTGATCGAATCTGTAAAGTGTTCTCTTCTAGTCATGATGGAAACATGACT
TTTGAGGACTTTTTGGATATGATGTCAGTATTTTCAGAGAATGCTCCAAA
AACTGTTAAAGTGGAATATGCATTCCGTATTTATGATTTCAATGAGGATG
ATTACATTTGTGAAAGTGATTTGAAGCGTGTTATTGATCGATTATGTGGA
GAAGATGACAAACTTTCAAGTGAGGACACAAACAGCATTGTCAAGAAAAT
CTTGCTTGAGGCTGACTTGGATGATGATAATCAACTGTCGTTTGCAGAAT
TTGAACATGTCATATCTAAAGCCCCAGATTTCTTGAACGCTTTTAGAATT
cgtgtttaaagtttgttttccATTCAAGCGATTTTATTGACATTTGACCA
ATATATTTTCAAGATTGTATCATTTTTATTCTCCNtattcaagcgatttt
attGACACTTGACCAATATATTTTCAAGATTGTATCATTTTTATTCTCCA
TAGTCTTTTAAAGCTCAATTTCATTGACTAGACAGCTCAAAAATTCAATG
GTGATTCTCAACATTTTAGTGTTTAGTTATTTTTAGTGGTTTTTTGAGTC
TTCAGAAAACAGACCCTTATTAAAGCAGTGGGGTATAATATGATTTTAAT
CATCGATAAAATAATTGTAATCTTTTTCCTAATTTAATATGACTTTCTAG
TTGGGATACTAACCTcgcacaatttttttcttattgtttttattcttggg
tgataatattttgataagtAGTTTTTAGTGAATCGTGTGTGTATAtaatt
gaatgaaaattttttgtaaaaccaCAGAAAGGACGTGTATAAATTTGCTT
TTTATgtctaaattatttttttgtaaacataATCTTCAACAGGGATATTC
TCTTTAAAAGAGAAATAGTCTTAATAATTATGTTTTATTCCAGATTTCAA
ACTACACAGTCAAGGAGATATTTAAATAATGAATGGGTTAGAAAAATTAT
AATCCAATTATATTTTTCTCTGTATCTTTGAACTTGATATTtattatttt
ctgattttttttgtttctatagcaacatttttgctttgtttattttttgt
gtaatttCAAATTTGTACTTTTTATAATATGAATCTGATaattttatatc
aaatttgaaGTACAATAAGTTCTGTCTTTTttgattgtttatttttatta
tgtGGATATTGGTTTCTTCATGTACCAAAATCTTAGTTTCATGAATTTTC
GTTATGAAAATTTCTGGGAGATCTTTTTGGATTATTTGTTTCCTCTATTG
CAGTTTTTTGAGGgttgtttttttagtttttggttTTACTTACGATTGTT
TTAAAGTGTAAGCATTAGTCTTTTCTAATCAGACTCATTCTGAAACATTT
AGCCAAAATTTTTCATACTGTaatatttttatgtttgttttgatttgttt
tgtaaACGTGTCTTTTTTAAGGttatttgtgagtattttgatTGTCTTTT
CAATTCCAAGTTGgtgaaaagtttttgtttagGTAGACTCTTTCTTTATA
ACAAAACCAAT

Coding sequence (CDS) from alignment at sc0000331:71623..73733+

>TCONS_00019554 ID=TCONS_00019554|Name=TCONS_00019554|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000331:71623..73733+ (Clytia hemisphaerica)
ATGGGTGGCAGTCAATCCGCATTCACTGTTGAAGAGCTAAAAGAATACCA
AGAACTTACATACTTCACTCAAAAAGAAATTCTACATTGTTTCAAGCGTT
TTCAACAGTTGGATCCCACTCTGGTCACGTACAATAATAAAAACCCACAA
TTGCCACAAAAAACTATACTCAAATTACCAGAGCTTGAAGTGAATCCATT
TCGTGATCGAATCTGTAAAGTGTTCTCTTCTAGTCATGATGGAAACATGA
CTTTTGAGGACTTTTTGGATATGATGTCAGTATTTTCAGAGAATGCTCCA
AAAACTGTTAAAGTGGAATATGCATTCCGTATTTATGATTTCAATGAGGA
TGATTACATTTGTGAAAGTGATTTGAAGCGTGTTATTGATCGATTATGTG
GAGAAGATGACAAACTTTCAAGTGAGGACACAAACAGCATTGTCAAGAAA
ATCTTGCTTGAGGCTGACTTGGATGATGATAATCAACTGTCGTTTGCAGA
ATTTGAACATGTCATATCTAAAGCCCCAGATTTCTTGAACGCTTTTAGAA
TTcgtgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010995XLOC_010995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019554-proteinTCONS_00019554-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019554-exon-sc0000331-1491911889:71623..72563TCONS_00019554-exon-sc0000331-1491911889:71623..72563Clytia hemisphaericaexon
TCONS_00019554-exon-sc0000331-1510915933:71623..72563TCONS_00019554-exon-sc0000331-1510915933:71623..72563Clytia hemisphaericaexon
TCONS_00019554-exon-sc0000331-1575043694:71623..72563TCONS_00019554-exon-sc0000331-1575043694:71623..72563Clytia hemisphaericaexon
TCONS_00019554-exon-sc0000331-1491911889:72629..73733TCONS_00019554-exon-sc0000331-1491911889:72629..73733Clytia hemisphaericaexon
TCONS_00019554-exon-sc0000331-1510915933:72629..73733TCONS_00019554-exon-sc0000331-1510915933:72629..73733Clytia hemisphaericaexon
TCONS_00019554-exon-sc0000331-1575043694:72629..73733TCONS_00019554-exon-sc0000331-1575043694:72629..73733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000331supercontigsc0000331:71623..73733 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.48912	6.19609	7.73962	7.10263	27.2946	20.1073	22.024	21.9436	23.6307	18.6468	14.8703	17.8911	6.47262	5.25557	4.255	3.73003	5.34835	5.20103	6.7749	9.23701	10.1199	9.01685	13.8177	14.4144	8.25268	9.27142	31.2484	30.1274	18.4562	18.7166
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00019554 vs. Swiss-Prot (Human)
Match: CIB3 (Calcium and integrin-binding family member 3 OS=Homo sapiens GN=CIB3 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.398e-50
Identity = 89/189 (47.09%), Postives = 129/189 (68.25%), Query Frame = 1 
Query:  349 MGGSQSAFTVEELKEYQELTYFTQKEILHCFKRFQQLDPTLVTYNNK---NPQLPQKTILKLPELEVNPFRDRICKVFSSSHDGNMTFEDFLDMMSVFSENAPKTVKVEYAFRIYDFNEDDYICESDLKRVIDRLCGEDDKLSSEDTNSIVKKILLEADLDDDNQLSFAEFEHVISKAPDFLNAFRIRV 906
            MG  Q+ FT E+L+ YQ+ T+FT+KEI+  F R+Q L P LV  +     + ++P + I  +PEL+ NPFR RI +VFS   DG+MT ++FLDM SV SE AP+ +K  YAF+IYDFN DDYIC  DL++ + +L      LS+E+ + + +K+L EAD D D +LS  +F+++I +APDFL+ F IR+
Sbjct:    1 MGNKQTVFTHEQLEAYQDCTFFTRKEIMRLFYRYQDLAPQLVPLDYTTCPDVKVPYELIGSMPELKDNPFRQRIAQVFSEDGDGHMTLDNFLDMFSVMSEMAPRDLKAYYAFKIYDFNNDDYICAWDLEQTVTKLTR--GGLSAEEVSLVCEKVLDEADGDHDGRLSLEDFQNMILRAPDFLSTFHIRI 187
The following BLAST results are available for this feature:
BLAST of TCONS_00019554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIB31.398e-5047.09Calcium and integrin-binding family member 3 OS=Ho... [more]
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