TCONS_00019502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019502
Unique NameTCONS_00019502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019502 ID=TCONS_00019502|Name=TCONS_00019502|organism=Clytia hemisphaerica|type=transcript|length=416bp
cacgacgcaacgggtacggcagggacggcggccgccgtaccagattttca
caaaatacccgaagttttcctcttcgtcggtcaaatcgctataaaatcgc
ttaaatttcctcattcgccgtaccagatataaaaagcttccgtcgtgcct
acTGTACTATCTTTGATGTAATAAATTGCTTATACTTCTTCGATTGAACT
GAACTCTGAATTATTTGTCACCAAAAATGACacttttcaatgaaatgaaa
aggagTTGTCAGACCCCTCTCTTCTTACTTATTCTTAATAAGGATTAACA
CCAAGAGATTAGCACTGGTGTATTATATTTAGTGTCTGATGCCTTAAGGG
AGAAATGCACTGATGTAATTAAATGTTTAAAGGTCAAAATCATAGTCAGA
ATTAGCTGAATTTCAG
Run BLAST on NCBI

transcript from alignment at sc0000328:257860..258275

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019502 ID=TCONS_00019502|Name=TCONS_00019502|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0000328:257860..258275 (Clytia hemisphaerica)
CTGAAATTCAGCTAATTCTGACTATGATTTTGACCTTTAAACATTTAATT
ACATCAGTGCATTTCTCCCTTAAGGCATCAGACACTAAATATAATACACC
AGTGCTAATCTCTTGGTGTTAATCCTTATTAAGAATAAGTAAGAAGAGAG
GGGTCTGACAActccttttcatttcattgaaaagtGTCATTTTTGGTGAC
AAATAATTCAGAGTTCAGTTCAATCGAAGAAGTATAAGCAATTTATTACA
TCAAAGATAGTACAgtaggcacgacggaagctttttatatctggtacggc
gaatgaggaaatttaagcgattttatagcgatttgaccgacgaagaggaa
aacttcgggtattttgtgaaaatctggtacggcggccgccgtccctgccg
tacccgttgcgtcgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010962XLOC_010962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019502-exon-sc0000328-1491911889:257860..258275TCONS_00019502-exon-sc0000328-1491911889:257860..258275Clytia hemisphaericaexon
TCONS_00019502-exon-sc0000328-1510915933:257860..258275TCONS_00019502-exon-sc0000328-1510915933:257860..258275Clytia hemisphaericaexon
TCONS_00019502-exon-sc0000328-1575043694:257860..258275TCONS_00019502-exon-sc0000328-1575043694:257860..258275Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:257860..258275 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.761446	0.305691	0.465849	0.684056	0	0	31.4092	39.3908	0.922364	7.40387	0.81674	0	0	0	0	0	0	0	0	0	1.94283	1.61248	1.18369	1.56291	0	0	20.4855	19.7239	0	0.875345
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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