|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019498 ID=TCONS_00019498|Name=TCONS_00019498|organism=Clytia hemisphaerica|type=transcript|length=1023bp
GTAAATTCAACACCACTTTCTGCCATGAAGGCTGTTCAGTATTTGTTAAT
GAGAAATACAAATAAATCATGTCTCCAACAATCCATGTTAAGATAAAAGA
CACGATAATAAACGTAGGTATCGTTAAAGCCTTGTTGATTTTTCGGTGAT
ATAACGAGGCAGTCGCTTGATTCAATGATTTGACGATGGCTTTGAGACTT
TGTTTGATTGAAATAAAACACGTGATCGAAACCATCAGAAACATTGCATC
AGAAATGGTCCAAAAATATAACGTTAAATTATAGTTTAATTGGGATAGCG
TTGTTTGTGTGATAAATAACATAACGGTTATTGATGAAGAGATTAAAGCT
ATCCCAAGATGCAATAGTTTTGTCCGAAATATAGTGATGTATAAATCGTA
ACGCATGTTCAAGCGGACGAATAAAAGCCGGTCTATCGTTAGTGCTGTCA
TAACCATATACAGTTGCGAGACTAAGAAACCTTGGCGAAAACATCGAATG
TGAAACGATACCGTGTCTTTCTCTAAGAATTTTTCGACGATGCGCAACAG
GTTGGTAAACATCTCGTTAAAACTCATTACTATTAAGTAGAGTCGTTGTA
TTTTGTTGAAATTCTGTTTATAACGTACTCTTAATAAAAGCGTTAAGCCA
ATACTGTGCAGAATGACTGGGATAGATCTTAATGTGACATCGGTAATGAA
ATAACCATCCATAGTGGTTTATCATATGTAAACTATCTCTGGATACAGTA
GAACGAAATACAATCGCGAGATGGATAAACTGTCCTGGTTTGATAGTACC
CAATGTCCTATTTGAATACGTAGACGGAAAGAAATCTTTGTCTCTGGGTC
AGCAGCCGATTTCAAACAGGTTTCTTCAAGAAATGATTTATTGGGCCTTA
TGGTTCAAAAGTTGATAAACTCTGCTCTGGCCTCGAGACTAGCTGTCGTA
AAAATAAGTTCTTTCAATGTTGAAgaataaatccaaaaaacaatcgaatc
aatcacttcttgaaaaaaatgtg Run BLAST on NCBI protein sequence of TCONS_00019498-protein >TCONS_00019498-protein ID=TCONS_00019498-protein|Name=TCONS_00019498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MDGYFITDVTLRSIPVILHSIGLTLLLRVRYKQNFNKIQRLYLIVMSFNE
MFTNLLRIVEKFLEKDTVSFHIRCFRQGFLVSQLYMVMTALTIDRLLFVR
LNMRYDLYITIFRTKLLHLGIALISSSITVMLFITQTTLSQLNYNLTLYF
WTISDAMFLMVSITCFISIKQSLKAIVKSLNQATASLYHRKINKALTIPT
FIIVSFILTWIVGDMIYLYFSLTNTEQPSWQKVVLNL Run BLAST on NCBI transcript from alignment at sc0000328:173691..174713 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019498 ID=TCONS_00019498|Name=TCONS_00019498|organism=Clytia hemisphaerica|type=transcript|length=1023bp|location=Sequence derived from alignment at sc0000328:173691..174713 (Clytia hemisphaerica)
cacatttttttcaagaagtgattgattcgattgttttttggatttattcT
TCAACATTGAAAGAACTTATTTTTACGACAGCTAGTCTCGAGGCCAGAGC
AGAGTTTATCAACTTTTGAACCATAAGGCCCAATAAATCATTTCTTGAAG
AAACCTGTTTGAAATCGGCTGCTGACCCAGAGACAAAGATTTCTTTCCGT
CTACGTATTCAAATAGGACATTGGGTACTATCAAACCAGGACAGTTTATC
CATCTCGCGATTGTATTTCGTTCTACTGTATCCAGAGATAGTTTACATAT
GATAAACCACTATGGATGGTTATTTCATTACCGATGTCACATTAAGATCT
ATCCCAGTCATTCTGCACAGTATTGGCTTAACGCTTTTATTAAGAGTACG
TTATAAACAGAATTTCAACAAAATACAACGACTCTACTTAATAGTAATGA
GTTTTAACGAGATGTTTACCAACCTGTTGCGCATCGTCGAAAAATTCTTA
GAGAAAGACACGGTATCGTTTCACATTCGATGTTTTCGCCAAGGTTTCTT
AGTCTCGCAACTGTATATGGTTATGACAGCACTAACGATAGACCGGCTTT
TATTCGTCCGCTTGAACATGCGTTACGATTTATACATCACTATATTTCGG
ACAAAACTATTGCATCTTGGGATAGCTTTAATCTCTTCATCAATAACCGT
TATGTTATTTATCACACAAACAACGCTATCCCAATTAAACTATAATTTAA
CGTTATATTTTTGGACCATTTCTGATGCAATGTTTCTGATGGTTTCGATC
ACGTGTTTTATTTCAATCAAACAAAGTCTCAAAGCCATCGTCAAATCATT
GAATCAAGCGACTGCCTCGTTATATCACCGAAAAATCAACAAGGCTTTAA
CGATACCTACGTTTATTATCGTGTCTTTTATCTTAACATGGATTGTTGGA
GACATGATTTATTTGTATTTCTCATTAACAAATACTGAACAGCCTTCATG
GCAGAAAGTGGTGTTGAATTTAC Coding sequence (CDS) from alignment at sc0000328:173691..174713 >TCONS_00019498 ID=TCONS_00019498|Name=TCONS_00019498|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0000328:173691..174713 (Clytia hemisphaerica)
ATGGATGGTTATTTCATTACCGATGTCACATTAAGATCTATCCCAGTCAT
TCTGCACAGTATTGGCTTAACGCTTTTATTAAGAGTACGTTATAAACAGA
ATTTCAACAAAATACAACGACTCTACTTAATAGTAATGAGTTTTAACGAG
ATGTTTACCAACCTGTTGCGCATCGTCGAAAAATTCTTAGAGAAAGACAC
GGTATCGTTTCACATTCGATGTTTTCGCCAAGGTTTCTTAGTCTCGCAAC
TGTATATGGTTATGACAGCACTAACGATAGACCGGCTTTTATTCGTCCGC
TTGAACATGCGTTACGATTTATACATCACTATATTTCGGACAAAACTATT
GCATCTTGGGATAGCTTTAATCTCTTCATCAATAACCGTTATGTTATTTA
TCACACAAACAACGCTATCCCAATTAAACTATAATTTAACGTTATATTTT
TGGACCATTTCTGATGCAATGTTTCTGATGGTTTCGATCACGTGTTTTAT
TTCAATCAAACAAAGTCTCAAAGCCATCGTCAAATCATTGAATCAAGCGA
CTGCCTCGTTATATCACCGAAAAATCAACAAGGCTTTAACGATACCTACG
TTTATTATCGTGTCTTTTATCTTAACATGGATTGTTGGAGACATGATTTA
TTTGTATTTCTCATTAACAAATACTGAACAGCCTTCATGGCAGAAAGTGG
TGTTGAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019498-exon-sc0000328-1491911889:173691..174713 | TCONS_00019498-exon-sc0000328-1491911889:173691..174713 | Clytia hemisphaerica | exon |
| TCONS_00019498-exon-sc0000328-1510915933:173691..174713 | TCONS_00019498-exon-sc0000328-1510915933:173691..174713 | Clytia hemisphaerica | exon |
| TCONS_00019498-exon-sc0000328-1575043694:173691..174713 | TCONS_00019498-exon-sc0000328-1575043694:173691..174713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:173691..174713 . |
Blast
The following BLAST results are available for this feature:
|
