TCONS_00019496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019496
Unique NameTCONS_00019496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019496 ID=TCONS_00019496|Name=TCONS_00019496|organism=Clytia hemisphaerica|type=transcript|length=1857bp
TTTTAAAGTGCCATTATATCAAAAAACTGTCATTAAAAGTTGCGGTCGGT
CatcaaaaaacgtttttttcgtCAATATAAATAAAGAACCTTTTCAGTCA
AAGGAAAGTAGTTTAGTCAAGCCTTTGCAACGCTCAAGAGCAGACAACAT
AGCCTGTGCAATTGGACTTTTGAAAGGCAACTTGTGTGTTGTGTGTGGTA
TCCAGTCTAATGATAATGCGACCAGAACCTACAAAGCTTCGTTTTGATAT
ACAACAGCAGTCACATAGAGAAGATATGAAGAAACCGTTTTGTTTTGACT
CCATCACAGCTGAAAAACAGAAACAAAAGAGTATGGCTGCCGAAATTGAG
ATAATCGAGACAAGTCGTGATCAAGTAGTGAAAGAGAAGAAGATGATTGA
TGAAAACGCGGTTAAAACGCGGGACACTAAAGTCTCGGAATCGTCATCTA
CCCGCGGTTCAGACGACGAAGGAACCACAGATGGAAAGCCGAACCATTCT
TACATTAGCCTTATTGCCAATGCTATCTTGTCATCCAAGGAAAAGAGGCT
AGTTCTCAGTGATATTTATCAATTTGTTCTAGACACTCAACCGTATTTCC
GTAACAAAGCTGGTCAAGGATGGAGAAACAGTATCAGACATAATCTAAGT
TTAAACGAATGTTTCGTAAAAGCAGGACGAAGCCCGAACGGGAAAGGACA
TTTCTGGGCAATCAATCCTGCAAATTTTGATGACTTTTCAAAAGGTGATT
TCAGACGTCGCAGAGCTCAACGACGCGCCCGACGTGCGATGGCTTTTGGT
GATTTGATCGAACATTTTGGTCCTTATTGGTCATCCTATCAACAATATTC
ATCTCCAAGACCAACAATGGCATCTTATACTTCACACCCAGTCAGATATT
CGCCCTACTACCGCCCAACATCGATCAGATCGCCCGAATGTAAGAGCCCG
CCCTACTTAGTAAGCTCAAAGAGAATCGAAGTGAACTCAAAACCAATTGC
AACTAGCCTTCCAACTCCCTCACCACCGCCCACCGCCACCAAAAAACGTG
GCTTTGACGTTGAAAGTTTGTTACGCGACGACAAAGAAATTGAACGCCCG
ATCCCGATTAAGATTAACAAACGCCCTTCATCAACGGATGTTTCACCGCC
CTCGTTTACGGGTGTTGCATCATCATACCCGTACGCCCGTCTCAATTTGG
ATTACTTAAACGACAAACGGTACGCTACGCCGCGTTTCGGTGCAACTGAC
CTTTCAACGGCCGCATCTCTTTATGAGAGGCGCCGCATCTATGGGTCCAC
CCAACGATCACATTATTTATGGGACGAACGCTATAAGCTTTCCATGGttt
aaaatgacattttgtttgaaaataagaagaaaacTTTATATGTGGAAAGC
TAGAAATTTATGAACTTTCCCGCTAAATACactttatttttctaaattca
acACCCATACCTTGTGTTTATAGTTTTGAACGTTGTTTAGATAATGTAAA
TATTCCAAAGTTATTTAGTTGAGTTTTAGTCAATTAGtgttttgtagaaa
aaaaataagtacatttatttttgtgttttatgttttttatttttttttca
aaatattataatcGTATAAATTAGTTACTGTAAATTATTACTGTAGATTT
TATTACTGGGTTCTTGTTAGTATATAAAGCgctaaatttattgaaaaaat
ttatgatattattattattttaagtgGCTATTATAGTTTTATATAAATTA
TATAAAATATGaacaaaatttatttgaaaaatttattattggcttgtaaa
tatttttcttcgtcTTTCAAAAGTACTAAATagttggaaaaagaaaatct
ttaaaag
Run BLAST on NCBI

protein sequence of forkhead box-containing transcription factor FoxQ2b

>TCONS_00019496-protein ID=TCONS_00019496-protein|Name=forkhead box-containing transcription factor FoxQ2b|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MIMRPEPTKLRFDIQQQSHREDMKKPFCFDSITAEKQKQKSMAAEIEIIE
TSRDQVVKEKKMIDENAVKTRDTKVSESSSTRGSDDEGTTDGKPNHSYIS
LIANAILSSKEKRLVLSDIYQFVLDTQPYFRNKAGQGWRNSIRHNLSLNE
CFVKAGRSPNGKGHFWAINPANFDDFSKGDFRRRRAQRRARRAMAFGDLI
EHFGPYWSSYQQYSSPRPTMASYTSHPVRYSPYYRPTSIRSPECKSPPYL
VSSKRIEVNSKPIATSLPTPSPPPTATKKRGFDVESLLRDDKEIERPIPI
KINKRPSSTDVSPPSFTGVASSYPYARLNLDYLNDKRYATPRFGATDLST
AASLYERRRIYGSTQRSHYLWDERYKLSMV
Run BLAST on NCBI

transcript from alignment at sc0000328:115344..117200

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019496 ID=TCONS_00019496|Name=TCONS_00019496|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at sc0000328:115344..117200 (Clytia hemisphaerica)
cttttaaagattttctttttccaactATTTAGTACTTTTGAAAgacgaag
aaaaatatttacaagccaataataaatttttcaaataaattttgttCATA
TTTTATATAATTTATATAAAACTATAATAGCcacttaaaataataataat
atcataaattttttcaataaatttagcGCTTTATATACTAACAAGAACCC
AGTAATAAAATCTACAGTAATAATTTACAGTAACTAATTTATACgattat
aatattttgaaaaaaaaataaaaaacataaaacacaaaaataaatgtact
tattttttttctacaaaacaCTAATTGACTAAAACTCAACTAAATAACTT
TGGAATATTTACATTATCTAAACAACGTTCAAAACTATAAACACAAGGTA
TGGGTgttgaatttagaaaaataaagtGTATTTAGCGGGAAAGTTCATAA
ATTTCTAGCTTTCCACATATAAAgttttcttcttattttcaaacaaaatg
tcattttaaaCCATGGAAAGCTTATAGCGTTCGTCCCATAAATAATGTGA
TCGTTGGGTGGACCCATAGATGCGGCGCCTCTCATAAAGAGATGCGGCCG
TTGAAAGGTCAGTTGCACCGAAACGCGGCGTAGCGTACCGTTTGTCGTTT
AAGTAATCCAAATTGAGACGGGCGTACGGGTATGATGATGCAACACCCGT
AAACGAGGGCGGTGAAACATCCGTTGATGAAGGGCGTTTGTTAATCTTAA
TCGGGATCGGGCGTTCAATTTCTTTGTCGTCGCGTAACAAACTTTCAACG
TCAAAGCCACGTTTTTTGGTGGCGGTGGGCGGTGGTGAGGGAGTTGGAAG
GCTAGTTGCAATTGGTTTTGAGTTCACTTCGATTCTCTTTGAGCTTACTA
AGTAGGGCGGGCTCTTACATTCGGGCGATCTGATCGATGTTGGGCGGTAG
TAGGGCGAATATCTGACTGGGTGTGAAGTATAAGATGCCATTGTTGGTCT
TGGAGATGAATATTGTTGATAGGATGACCAATAAGGACCAAAATGTTCGA
TCAAATCACCAAAAGCCATCGCACGTCGGGCGCGTCGTTGAGCTCTGCGA
CGTCTGAAATCACCTTTTGAAAAGTCATCAAAATTTGCAGGATTGATTGC
CCAGAAATGTCCTTTCCCGTTCGGGCTTCGTCCTGCTTTTACGAAACATT
CGTTTAAACTTAGATTATGTCTGATACTGTTTCTCCATCCTTGACCAGCT
TTGTTACGGAAATACGGTTGAGTGTCTAGAACAAATTGATAAATATCACT
GAGAACTAGCCTCTTTTCCTTGGATGACAAGATAGCATTGGCAATAAGGC
TAATGTAAGAATGGTTCGGCTTTCCATCTGTGGTTCCTTCGTCGTCTGAA
CCGCGGGTAGATGACGATTCCGAGACTTTAGTGTCCCGCGTTTTAACCGC
GTTTTCATCAATCATCTTCTTCTCTTTCACTACTTGATCACGACTTGTCT
CGATTATCTCAATTTCGGCAGCCATACTCTTTTGTTTCTGTTTTTCAGCT
GTGATGGAGTCAAAACAAAACGGTTTCTTCATATCTTCTCTATGTGACTG
CTGTTGTATATCAAAACGAAGCTTTGTAGGTTCTGGTCGCATTATCATTA
GACTGGATACCACACACAACACACAAGTTGCCTTTCAAAAGTCCAATTGC
ACAGGCTATGTTGTCTGCTCTTGAGCGTTGCAAAGGCTTGACTAAACTAC
TTTCCTTTGACTGAAAAGGTTCTTTATTTATATTGacgaaaaaaacgttt
tttgatGACCGACCGCAACTTTTAATGACAGTTTTTTGATATAATGGCAC
TTTAAAA

Coding sequence (CDS) from alignment at sc0000328:115344..117200

>TCONS_00019496 ID=TCONS_00019496|Name=TCONS_00019496|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0000328:115344..117200 (Clytia hemisphaerica)
ttaaaCCATGGAAAGCTTATAGCGTTCGTCCCATAAATAATGTGATCGTT
GGGTGGACCCATAGATGCGGCGCCTCTCATAAAGAGATGCGGCCGTTGAA
AGGTCAGTTGCACCGAAACGCGGCGTAGCGTACCGTTTGTCGTTTAAGTA
ATCCAAATTGAGACGGGCGTACGGGTATGATGATGCAACACCCGTAAACG
AGGGCGGTGAAACATCCGTTGATGAAGGGCGTTTGTTAATCTTAATCGGG
ATCGGGCGTTCAATTTCTTTGTCGTCGCGTAACAAACTTTCAACGTCAAA
GCCACGTTTTTTGGTGGCGGTGGGCGGTGGTGAGGGAGTTGGAAGGCTAG
TTGCAATTGGTTTTGAGTTCACTTCGATTCTCTTTGAGCTTACTAAGTAG
GGCGGGCTCTTACATTCGGGCGATCTGATCGATGTTGGGCGGTAGTAGGG
CGAATATCTGACTGGGTGTGAAGTATAAGATGCCATTGTTGGTCTTGGAG
ATGAATATTGTTGATAGGATGACCAATAAGGACCAAAATGTTCGATCAAA
TCACCAAAAGCCATCGCACGTCGGGCGCGTCGTTGAGCTCTGCGACGTCT
GAAATCACCTTTTGAAAAGTCATCAAAATTTGCAGGATTGATTGCCCAGA
AATGTCCTTTCCCGTTCGGGCTTCGTCCTGCTTTTACGAAACATTCGTTT
AAACTTAGATTATGTCTGATACTGTTTCTCCATCCTTGACCAGCTTTGTT
ACGGAAATACGGTTGAGTGTCTAGAACAAATTGATAAATATCACTGAGAA
CTAGCCTCTTTTCCTTGGATGACAAGATAGCATTGGCAATAAGGCTAATG
TAAGAATGGTTCGGCTTTCCATCTGTGGTTCCTTCGTCGTCTGAACCGCG
GGTAGATGACGATTCCGAGACTTTAGTGTCCCGCGTTTTAACCGCGTTTT
CATCAATCATCTTCTTCTCTTTCACTACTTGATCACGACTTGTCTCGATT
ATCTCAATTTCGGCAGCCATACTCTTTTGTTTCTGTTTTTCAGCTGTGAT
GGAGTCAAAACAAAACGGTTTCTTCATATCTTCTCTATGTGACTGCTGTT
GTATATCAAAACGAAGCTTTGTAGGTTCTGGTCGCATTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010956XLOC_010956Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
forkhead box-containing transcription factor FoxQ2bTCONS_00019496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019496-exon-sc0000328-1491911889:115344..117200TCONS_00019496-exon-sc0000328-1491911889:115344..117200Clytia hemisphaericaexon
TCONS_00019496-exon-sc0000328-1510915933:115344..117200TCONS_00019496-exon-sc0000328-1510915933:115344..117200Clytia hemisphaericaexon
TCONS_00019496-exon-sc0000328-1575043694:115344..117200TCONS_00019496-exon-sc0000328-1575043694:115344..117200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000328supercontigsc0000328:115344..117200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0645833	0.0839718	0.0487497	0.119235	0.145157	0.068823	0.193741	0.155467	0.0907051	0.202235	0.174484	0.0143374	7.45938	7.76151	17.3705	23.5607	2.52109	1.55704	0.114422	0.215523	0.353842	0.243659	5.50438	6.10387	18.5369	14.3366	192.522	170.086	2.07879	1.26591
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00019496 vs. Swiss-Prot (Human)
Match: FOXB1 (Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 2.066e-24
Identity = 51/94 (54.26%), Postives = 66/94 (70.21%), Query Frame = 3 
Query:  477 TDGKPNHSYISLIANAILSSKEKRLVLSDIYQFVLDTQPYFRNKAGQGWRNSIRHNLSLNECFVKAGRSPN--GKGHFWAINPANFDDFSKGDF 752
            +D KP +SYISL A AI SS EK L LS+IY+F++D  PY+R    Q W+NS+RHNLS N+CF+K  R P+  GKG FWA++P+  D F  G F
Sbjct:   10 SDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENT-QRWQNSLRHNLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSF 102
The following BLAST results are available for this feature:
BLAST of TCONS_00019496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXB12.066e-2454.26Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 P... [more]
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