forkhead box-containing transcription factor FoxQ2b (polypeptide) - C. hemisphaerica

Overview
Nameforkhead box-containing transcription factor FoxQ2b
Unique NameTCONS_00019496-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019496-protein ID=TCONS_00019496-protein|Name=forkhead box-containing transcription factor FoxQ2b|organism=Clytia hemisphaerica|type=polypeptide|length=380bp
MIMRPEPTKLRFDIQQQSHREDMKKPFCFDSITAEKQKQKSMAAEIEIIE
TSRDQVVKEKKMIDENAVKTRDTKVSESSSTRGSDDEGTTDGKPNHSYIS
LIANAILSSKEKRLVLSDIYQFVLDTQPYFRNKAGQGWRNSIRHNLSLNE
CFVKAGRSPNGKGHFWAINPANFDDFSKGDFRRRRAQRRARRAMAFGDLI
EHFGPYWSSYQQYSSPRPTMASYTSHPVRYSPYYRPTSIRSPECKSPPYL
VSSKRIEVNSKPIATSLPTPSPPPTATKKRGFDVESLLRDDKEIERPIPI
KINKRPSSTDVSPPSFTGVASSYPYARLNLDYLNDKRYATPRFGATDLST
AASLYERRRIYGSTQRSHYLWDERYKLSMV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010956XLOC_010956Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019496TCONS_00019496Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
IPR030456TF_fork_head_CS_2
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001766Fork head domainPRINTSPR00053FORKHEADcoord: 93..106
score: 60.26
coord: 114..131
score: 44.4
coord: 138..155
score: 73.59
IPR001766Fork head domainSMARTSM00339forkneu4coord: 91..180
e-value: 6.4E-43
score: 158.6
IPR001766Fork head domainPFAMPF00250Forkheadcoord: 93..175
e-value: 2.1E-29
score: 101.6
IPR001766Fork head domainPROSITEPS50039FORK_HEAD_3coord: 93..186
score: 30.696
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 83..178
e-value: 3.5E-32
score: 109.9
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 93..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..95
NoneNo IPR availableCDDcd00059FHcoord: 93..169
e-value: 6.94139E-37
score: 128.441
IPR030456Fork head domain conserved site 2PROSITEPS00658FORK_HEAD_2coord: 138..144

Blast
[Close]
BLAST of forkhead box-containing transcription factor FoxQ2b vs. Swiss-Prot (Human)
Match: FOXB1 (Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.411e-27
Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 0 
Query:   90 TDGKPNHSYISLIANAILSSKEKRLVLSDIYQFVLDTQPYFRNKAGQGWRNSIRHNLSLNECFVKAGRSPN--GKGHFWAINPANFDDFSKGDFRRRR 185
            +D KP +SYISL A AI SS EK L LS+IY+F++D  PY+R    Q W+NS+RHNLS N+CF+K  R P+  GKG FWA++P+  D F  G F RRR
Sbjct:   10 SDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPYYRENT-QRWQNSLRHNLSFNDCFIKIPRRPDQPGKGSFWALHPSCGDMFENGSFLRRR 106
The following BLAST results are available for this feature:
BLAST of forkhead box-containing transcription factor FoxQ2b vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXB11.411e-2755.10Forkhead box protein B1 OS=Homo sapiens GN=FOXB1 P... [more]
back to top