|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019486 ID=TCONS_00019486|Name=TCONS_00019486|organism=Clytia hemisphaerica|type=transcript|length=3015bpRun BLAST on NCBI protein sequence of TCONS_00019486-protein >TCONS_00019486-protein ID=TCONS_00019486-protein|Name=TCONS_00019486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp MYHELLIALSGLPGAIFKADKYGGLEVTKNLPFLHPSEAELLDKLCSLGGRun BLAST on NCBI transcript from alignment at sc0000328:290562..309684- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019486 ID=TCONS_00019486|Name=TCONS_00019486|organism=Clytia hemisphaerica|type=transcript|length=19123bp|location=Sequence derived from alignment at sc0000328:290562..309684- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:290562..309684- >TCONS_00019486 ID=TCONS_00019486|Name=TCONS_00019486|organism=Clytia hemisphaerica|type=CDS|length=38361bp|location=Sequence derived from alignment at sc0000328:290562..309684- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019486 vs. Swiss-Prot (Human)
Match: GCP4 (Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1 SV=1) HSP 1 Score: 522.316 bits (1344), Expect = 5.342e-172 Identity = 280/682 (41.06%), Postives = 422/682 (61.88%), Query Frame = 3
Query: 105 MYHELLIALSGLPGAIFKADKYGGLEVTKNLPFLHPSEAELLDKLCSLGGHYRSLLKFIETYSVDLSPIDHLLKNDNRNPLEGQYLHAFCAGLTSVLKPYQDSLVQIERRVMKDPYTSLSHIHRGLEEYFFIFPVLSGLVETMDTNKLHGCQVLELLYNESNTGNPTVRKAILKILHACHGVLFKQLSAWMIYGILMDEYDEFFISMKSTEGG-KRKSETDEVDGAVLSSETILRGVSGREVXXXXXXXXXXXXXXKHEARIMVVPNM---------LPTYIPLRLAQKILFIGESVQMLKDTENLKIHHYDENIGNLLQGRENDFLKTLHDLQERQEFSIPALEVEVDKIKACVAEQLWKLVVEDADLIKHLKLLKEMYLLGRGELYLTLIDHLHTTMKGPPTTVMSYDISAAFKQSLAKILT---------------YSEEYEDLFELKLDMKTDDQTSNEKFKSTWDLLQVQYNPPWPLHLLFTPSIMEKLNMLFTFLLKVRRTQIELQGLWAFLMSAKRSGKIKMTSGPIWVLRRRMAFFIDNLQYYLQVDVLETQFSLLISKIHKTQSFENINRSLDNFLIEMLKQSFVSMKKVFNILHEIIYHCMAFCETVTSSDDLWDTSSKTEERIERIAEEYNKQTSLLFTILSSVRSHQTSPHLAQLLLRIDFNKFFTKKSA 2075
M HELL+ALSG PG+IF +K GL+V+++ PFLHPSE +L++LC LG Y +FIE Y+ + DH + L G YL AFC GL SVL+PY+ +L+ +E+ + DP+ S+SH++ L+++ +FP + +VE + + K+HGCQ+LE +Y S G P VR A+ KIL CHGV++KQLSAWM++G+L+D+++EFFI + G + E DE D + G++G+++ E L E M+ P++ LP+YIP+R+A+KILF+GESVQM ++ +N+ + G++L+ +E+ F LH L+++ FS+ E VD+I++ VAE LWKL+VE++DL+ LK++K+ YLLGRGEL+ ID +K PPT V +D++ AF+QS K+L + +E++ + + + + E S W L + Y WPLH+LFTP+++EK N++F +LL VRR Q ELQ WA M K K T W LR MAF +DNLQYYLQVDVLE+QFS L+ +I+ T+ FE+I + D+FL +L QSF+ +K VF+ L+EI+ C +FC V S +L + ++ + + +++Q+SLLF ILSSVR+HQ + LAQLLLR+D+NK++T+
Sbjct: 1 MIHELLLALSGYPGSIFTWNKRSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGI-------GGLTGKQLRELQDLRLI-------EEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFEN-QNVNL----TRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKADATQAREGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL-KSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLV--SQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGG 660 The following BLAST results are available for this feature:
BLAST of TCONS_00019486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.