|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019480 ID=TCONS_00019480|Name=TCONS_00019480|organism=Clytia hemisphaerica|type=transcript|length=3576bpRun BLAST on NCBI protein sequence of TCONS_00019480-protein >TCONS_00019480-protein ID=TCONS_00019480-protein|Name=TCONS_00019480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=923bp MALNFQYCEEKLEDVYDIKEELGRGQFAVVKRCLSKDTSEAVAAKFVKVKRun BLAST on NCBI transcript from alignment at sc0000328:44877..59342- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019480 ID=TCONS_00019480|Name=TCONS_00019480|organism=Clytia hemisphaerica|type=transcript|length=14466bp|location=Sequence derived from alignment at sc0000328:44877..59342- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:44877..59342- >TCONS_00019480 ID=TCONS_00019480|Name=TCONS_00019480|organism=Clytia hemisphaerica|type=CDS|length=33264bp|location=Sequence derived from alignment at sc0000328:44877..59342- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019480 vs. Swiss-Prot (Human)
Match: DAPK2 (Death-associated protein kinase 2 OS=Homo sapiens GN=DAPK2 PE=1 SV=1) HSP 1 Score: 306.99 bits (785), Expect = 1.913e-93 Identity = 150/307 (48.86%), Postives = 210/307 (68.40%), Query Frame = 1
Query: 127 YCEEKLEDVYDIKEELGRGQFAVVKRCLSKDTSEAVAAKFVKVKRTKSSRNGLDRKLIEREAGILNSLQHEKVLKLFNVFDLGAEMCLVLELLSGGELFDKISEQEYLTEVEAACYMKQVLQGIDYLHKNNIVHLDIKPENIVLKEKY--GTDIKLVDFGLAQIVKPGDEIREMMGTPEFVAPEVINYDCIGLYTDMWAIGVLAYILLSGCSPFLGDDNQETYDNICRVDYHFDEEYFDTISEDAKLFVQELLIKNPKKRNTADDCLDHPWIRSM--AQFRSREDSSIIQTARFKAFVARRRWQQSF 1035
+ ++K+ED YDI EELG GQFA+VK+C K T AAKF+K +++++SR G+ R+ IERE IL + H V+ L +V++ ++ L+LEL+SGGELFD ++++E L+E EA ++KQ+L G++YLH I H D+KPENI+L +K IKL+DFGLA ++ G E + + GTPEFVAPE++NY+ +GL DMW+IGV+ YILLSG SPFLGD QET NI V Y FDEE+F SE AK F+++LL+K +KR T + L HPWI + Q R + S++ F+ RRRW+ SF
Sbjct: 14 FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRE-SVVNLENFRKQYVRRRWKLSF 319 The following BLAST results are available for this feature:
BLAST of TCONS_00019480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.