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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019456 ID=TCONS_00019456|Name=TCONS_00019456|organism=Clytia hemisphaerica|type=transcript|length=1995bp
GTTTGTTTCACTTTCGTTTGTGAAACATATTTGTGACGTCAATTCCTTTT
TCACTCTAAAACGTCAAAGAAGACGCTGCACTGAAAGTTATACCAGTTAC
AAAACCTCAAATCTTGAATGTTGAAAGCAGAGTAAATAGAATTGAGAGAT
GTTTGAATACCGAAGGAAAATCACAATTGTTTGGATGAAACTTCTCATAT
GACTAAAACAGACGATGTCAATTCACACAAATCCATCAGATCTGAATTTG
AAACGAAGCAGTGTTtgttgtcgaatttgtcaagatgGACGCGCCATAGA
AGAACTAATCACACCGTGCAAATGCGCCGGTACCATGGGATATGTCCATT
CCAGCTGTCTAGAGAAATGGTTGAGTAGAACCTCGAGGACGTTTTGCGAA
CTATGCAATCACGATTTTAACACGAGGGTTGAAGTTAGCTCTTTTACCCA
GtgGTTACGATCAGTCAATAGCACAGTCAGCAATGATCGACGTTACATGC
TGATAGATCTTACTTGTTTCCTTTTACTCACGCCGCTTGGTTTTGTCAGT
TCATTCTTATGCATCCAAGGATCTGTCTTGTATTACCGCACGGAAAATTT
TTGGACTGGTTTTGGATTAGCTCTGTTAACAGGTTTTCTAATTCTAATGT
ACTTTCTATGGATGGGTGTTACCCTTAGATATCATTATCTGACGTTCAGG
AAATGGCAAGGAAATAATACAACAGTTAGGTTAGTTTTTTCGAATCATCG
ACGCCCTGAAAATGTATTACCAAACGCACTTGGGCGGCTGGCAACGCTTC
AGCGTGATGAACAACAAACGCCTGGGGTGGAAATTGTAATGTCTATTGTT
AAAAATGATGACCACCCTGAAAACATAGTGTGATATTATTTTAATGTGAT
TTATGTATGTACAGTATAGATTACCGGTGACTCAAAAAATCCAAAGGATG
ATCTCTTTTCCCTTCACCAAACTTTCATCTTaggagactgttcatctaac
gtttccagaccatctaaaaagaacgacaaaactattaaaaagcgacaaaa
aaatgacaaaccctaaccctaaccttaGCTATAaaaaaaacgacatattt
cgccgtcccAATCCCCGACCTTGGTCAGTGACTACCACCCCTACATATcc
attactttttttattttacgctATAACAACTATTTAAAGAACGAtgaatt
acgcatgcgtataagtctctatttgggtgagctgtaAACATTAGATTAAC
TAACGCATAGGGGCTGTTTATATAAAGACGAGCTCACCCGGCTAGTTGAG
TTTGGATGGATTTTCGAACGTTACGTCACAGTTTTTGACGaatcaaatgg
ctaaaaatagATCACGTGACGTTCGGAAATCCATCCCATTTCACCTAGCC
AGACCAGTCCGCCTCCATACGAACAGcctcttaaggccggtctccacttt
cgcgtggcatgagcgaaaactttttgacgtttttgtaaggctattggtcg
gttgaaaaatgaagcaattctattggtcgaaattgacgtaacggatgaaa
aaggtagaacttccttcaacttttttctgTTCGcgtgaaacttttttatg
acgtaatcttttcttcaagcagaaaaggttaaaaaaaaactgCCGTCCAT
TTctcgcgaaagtggagaccggcctttagctCTTGCAGTtggatttttat
gaaaaaatccagttattttctttccttttaaatactactgttcccaagta
acttttcataaaaaattctttctttcaaCGATATCCctttataaaaattt
tgaataactgaGGGGAAATCTAGCTTAAAGATTATAGCCTAACGGGCGGA
GAATATATAAACcactttgaataaaaaactttggCAATATTAACCGGGAG
TCTATTGCATTTTATTTAGTGtatatgaatttttatttgtGTAGAAATGT
AAgtgtagatttatttttaaagtagaaaCTTTTATAATCAAGATT Run BLAST on NCBI protein sequence of TCONS_00019456-protein >TCONS_00019456-protein ID=TCONS_00019456-protein|Name=TCONS_00019456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MSIHTNPSDLNLKRSSVCCRICQDGRAIEELITPCKCAGTMGYVHSSCLE
KWLSRTSRTFCELCNHDFNTRVEVSSFTQWLRSVNSTVSNDRRYMLIDLT
CFLLLTPLGFVSSFLCIQGSVLYYRTENFWTGFGLALLTGFLILMYFLWM
GVTLRYHYLTFRKWQGNNTTVRLVFSNHRRPENVLPNALGRLATLQRDEQ
QTPGVEIVMSIVKNDDHPENIV Run BLAST on NCBI transcript from alignment at sc0000328:82869..86026+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019456 ID=TCONS_00019456|Name=TCONS_00019456|organism=Clytia hemisphaerica|type=transcript|length=3158bp|location=Sequence derived from alignment at sc0000328:82869..86026+ (Clytia hemisphaerica)
GTTTGTTTCACTTTCGTTTGTGAAACATATTTGTGACGTCAATTCCTTTT
TCACTCTAAAACGTCAAAGAAGACGCTGCACTGAAAGTTATACCAGTTAC
AAAACCTCAAATCTTGAATGTTGAAAGCAGAGTAAATAGAATTGAGAGAT
GTTTGAATACCGAAGGAAAATCACAATTGTTTGGATGAAACTTCTCATAT
GACTAAAACAGTAAGTCAATTTTCTTCAAGGGCTCGTGAAgcagtgttaa
aagtttttccttATCCGAAAAATTTCCGTCTCAGTGAAGTTTATAAAGAA
gtttttccgtctcaaaattttgcacacaaaaTTCAAGAATATATGTTAGT
TTACTGTGTGAAATCCGGTTTCCATCTCAGATGTAAACCCTTGTTTTGAC
CActgataaaaactttttttagtcGTTTAACGTTTTTAGTCGTTTTTCTC
AGGACGATGTCAATTCACACAAATCCATCAGATCTGAATTTGAAACGAAG
CAGTGTTtgttgtcgaatttgtcaagatgGACGCGCCATAGAAGAACTAA
TCACACCGTGCAAATGCGCCGGTACCATGGGATATGTCCATTCCAGCTGT
CTAGAGAAATGGTTGAGTAGAACCTCGAGGACGTTTTGCGAACTATGCAA
TCACGATTTTAACACGAGGGTTGAAGTTAGCTCTTTTACCCAGGTGAGAC
AAAATTTATTTAGCAGAAGTAAGAAAACCGTTAACATGAAACATCCCGAC
CTCAGTATTAAGTTGCTCAAATGGCTAAGTCATTTGTCAATTTCACGCTA
AACTGAATGATGATGGTGCCGCATTTCGATTCTAAATCTCAGCTACAATC
GGTGCCGAAATATATTAACAATATTGGACAATTtcgggtattttaacgtt
tttcagaacttaaagctcgggcgagaattcagtacttccactttgttttg
CATTAGATTTATCGATTTGGGAGGAGTTAAGTGGCTTTCAGGcaatattc
tcagccttattggatcatttttgagtttttagttcctgagatcctaaggt
gcTTAAGTGTTAAGCTTCATGTTAAAATCAGAGATTAAACTCTACTTTCA
AACCGTACTTTAAGggacttaaaaatcacttgcggtttcaaaattttgaa
ggaattccccttttgtccCAAATATTACGGTGGAAATAGAAGTATCACTG
ACGTGCAGATTTTTTAAATCCGGAAGGGCTAGATAGCGTACTTTAGCTGA
AAGGTGTGCCgcgaccaatcagaagcttcatGGATTTTCGAGAACAAAta
acaacaatatttttttgcgGTATTCGCTTTTTTTCTACCACTTCGGGCTT
TACTGTGGTGATCGGTAGCCTGGGTGAGCCTTTCACTTGACAAAATGTTT
TATCGGGTGGCTCCACTTTACTTCATAAATTACATTCGCTTAATGACCTT
ATATTTAGTGACTTTTAATAAAAGGGATTTTTAACGGGCAATGGACAAAT
TGTTTTGGGAACACTGGAACTGTTATTTACTTCATGCGCTTTTTGAGCCT
GATGATCGTCGGCGGACCAGGAAAATACCCTCGAATGAAAGAtaatttat
ttctttattttcagtgGTTACGATCAGTCAATAGCACAGTCAGCAATGAT
CGACGTTACATGCTGATAGATCTTACTTGTTTCCTTTTACTCACGCCGCT
TGGTTTTGTCAGTTCATTCTTATGCATCCAAGGATCTGTCTTGTATTACC
GCACGGAAAATTTTTGGACTGGTTTTGGATTAGCTCTGTTAACAGGTTTT
CTAATTCTAATGTACTTTCTATGGATGGGTGTTACCCTTAGATATCATTA
TCTGACGTTCAGGAAATGGCAAGGAAATAATACAACAGTTAGGTTAGTTT
TTTCGAATCATCGACGCCCTGAAAATGTATTACCAAACGCACTTGGGCGG
CTGGCAACGCTTCAGCGTGATGAACAACAAACGCCTGGGGTGGAAATTGT
AATGTCTATTGTTAAAAATGATGACCACCCTGAAAACATAGTGTGATATT
ATTTTAATGTGATTTATGTATGTACAGTATAGATTACCGGTGACTCAAAA
AATCCAAAGGATGATCTCTTTTCCCTTCACCAAACTTTCATCTTaggaga
ctgttcatctaacgtttccagaccatctaaaaagaacgacaaaactatta
aaaagcgacaaaaaaatgacaaaccctaaccctaaccttaGCTATAaaaa
aaacgacatatttcgccgtcccAATCCCCGACCTTGGTCAGTGACTACCA
CCCCTACATATccattactttttttattttacgctATAACAACTATTTAA
AGAACGAtgaattacgcatgcgtataagtctctatttgggtgagctgtaA
ACATTAGATTAACTAACGCATAGGGGCTGTTTATATAAAGACGAGCTCAC
CCGGCTAGTTGAGTTTGGATGGATTTTCGAACGTTACGTCACAGTTTTTG
ACGaatcaaatggctaaaaatagATCACGTGACGTTCGGAAATCCATCCC
ATTTCACCTAGCCAGACCAGTCCGCCTCCATACGAACAGcctcttaaggc
cggtctccactttcgcgtggcatgagcgaaaactttttgacgtttttgta
aggctattggtcggttgaaaaatgaagcaattctattggtcgaaattgac
gtaacggatgaaaaaggtagaacttccttcaacttttttctgTTCGcgtg
aaacttttttatgacgtaatcttttcttcaagcagaaaaggttaaaaaaa
aactgCCGTCCATTTctcgcgaaagtggagaccggcctttagctCTTGCA
GTtggatttttatgaaaaaatccagttattttctttccttttaaatacta
ctgttcccaagtaacttttcataaaaaattctttctttcaaCGATATCCc
tttataaaaattttgaataactgaGGGGAAATCTAGCTTAAAGATTATAG
CCTAACGGGCGGAGAATATATAAACcactttgaataaaaaactttggCAA
TATTAACCGGGAGTCTATTGCATTTTATTTAGTGtatatgaatttttatt
tgtGTAGAAATGTAAgtgtagatttatttttaaagtagaaaCTTTTATAA
TCAAGATT Coding sequence (CDS) from alignment at sc0000328:82869..86026+ >TCONS_00019456 ID=TCONS_00019456|Name=TCONS_00019456|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000328:82869..86026+ (Clytia hemisphaerica)
ATGTCAATTCACACAAATCCATCAGATCTGAATTTGAAACGAAGCAGTGT
TtgttgtcgaatttgtcaagatgGACGCGCCATAGAAGAACTAATCACAC
CGTGCAAATGCGCCGGTACCATGGGATATGTCCATTCCAGCTGTCTAGAG
AAATGGTTGAGTAGAACCTCGAGGACGTTTTGCGAACTATGCAATCACGA
TTTTAACACGAGGGTTGAAGTTAGCTCTTTTACCCAGtgGTTACGATCAG
TCAATAGCACAGTCAGCAATGATCGACGTTACATGCTGATAGATCTTACT
TGTTTCCTTTTACTCACGCCGCTTGGTTTTGTCAGTTCATTCTTATGCAT
CCAAGGATCTGTCTTGTATTACCGCACGGAAAATTTTTGGACTGGTTTTG
GATTAGCTCTGTTAACAGGTTTTCTAATTCTAATGTACTTTCTATGGATG
GGTGTTACCCTTAGATATCATTATCTGACGTTCAGGAAATGGCAAGGAAA
TAATACAACAGTTAGGTTAGTTTTTTCGAATCATCGACGCCCTGAAAATG
TATTACCAAACGCACTTGGGCGGCTGGCAACGCTTCAGCGTGATGAACAA
CAAACGCCTGGGGTGGAAATTGTAATGTCTATTGTTAAAAATGATGACCA
CCCTGAAAACATAGTGTGAATGTCAATTCACACAAATCCATCAGATCTGA
ATTTGAAACGAAGCAGTGTTtgttgtcgaatttgtcaagatgGACGCGCC
ATAGAAGAACTAATCACACCGTGCAAATGCGCCGGTACCATGGGATATGT
CCATTCCAGCTGTCTAGAGAAATGGTTGAGTAGAACCTCGAGGACGTTTT
GCGAACTATGCAATCACGATTTTAACACGAGGGTTGAAGTTAGCTCTTTT
ACCCAGtgGTTACGATCAGTCAATAGCACAGTCAGCAATGATCGACGTTA
CATGCTGATAGATCTTACTTGTTTCCTTTTACTCACGCCGCTTGGTTTTG
TCAGTTCATTCTTATGCATCCAAGGATCTGTCTTGTATTACCGCACGGAA
AATTTTTGGACTGGTTTTGGATTAGCTCTGTTAACAGGTTTTCTAATTCT
AATGTACTTTCTATGGATGGGTGTTACCCTTAGATATCATTATCTGACGT
TCAGGAAATGGCAAGGAAATAATACAACAGTTAGGTTAGTTTTTTCGAAT
CATCGACGCCCTGAAAATGTATTACCAAACGCACTTGGGCGGCTGGCAAC
GCTTCAGCGTGATGAACAACAAACGCCTGGGGTGGAAATTGTAATGTCTA
TTGTTAAAAATGATGACCACCCTGAAAACATAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019456-exon-sc0000328-1491911889:82869..83078 | TCONS_00019456-exon-sc0000328-1491911889:82869..83078 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1510915933:82869..83078 | TCONS_00019456-exon-sc0000328-1510915933:82869..83078 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1575043694:82869..83078 | TCONS_00019456-exon-sc0000328-1575043694:82869..83078 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1491911889:83321..83561 | TCONS_00019456-exon-sc0000328-1491911889:83321..83561 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1510915933:83321..83561 | TCONS_00019456-exon-sc0000328-1510915933:83321..83561 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1575043694:83321..83561 | TCONS_00019456-exon-sc0000328-1575043694:83321..83561 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1491911889:84483..86026 | TCONS_00019456-exon-sc0000328-1491911889:84483..86026 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1510915933:84483..86026 | TCONS_00019456-exon-sc0000328-1510915933:84483..86026 | Clytia hemisphaerica | exon |
| TCONS_00019456-exon-sc0000328-1575043694:84483..86026 | TCONS_00019456-exon-sc0000328-1575043694:84483..86026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000328 | supercontig | sc0000328:82869..86026 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00019456 vs. Swiss-Prot (Human)
Match: MARH2 (E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 3.472e-32 Identity = 67/185 (36.22%), Postives = 102/185 (55.14%), Query Frame = 2
Query: 269 CRICQDGRAIEELITPCKCAGTMGYVHSSCLEKWLSRTSRTFCELCNHDFNTRVEVSSFTQWLRSVNSTVSNDRRYMLIDLTCFLLLTPLGFVSSFLCIQGSVLYYRTENXXXXXXXXXXXXXXXXMYFLWMGVTLRYHYLTFRKWQGNNTTVRLVFSNHRRPENVLPNALGRLATLQRDEQQTP 823
CRIC +G E L++PC C GT+G VH SCLEKWLS ++ ++CELC+ +F T+WL+ + ++R + D+ CFL +TPL +S +LC++G+ + R + GL LT L +Y LW V+ RYH + +W+ N VRL PE + L L++ ++TP
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLK--DPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLAA-GLLKKVAEETP 245
The following BLAST results are available for this feature:
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