TCONS_00019456-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019456-protein
Unique NameTCONS_00019456-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019456-protein ID=TCONS_00019456-protein|Name=TCONS_00019456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MSIHTNPSDLNLKRSSVCCRICQDGRAIEELITPCKCAGTMGYVHSSCLE
KWLSRTSRTFCELCNHDFNTRVEVSSFTQWLRSVNSTVSNDRRYMLIDLT
CFLLLTPLGFVSSFLCIQGSVLYYRTENFWTGFGLALLTGFLILMYFLWM
GVTLRYHYLTFRKWQGNNTTVRLVFSNHRRPENVLPNALGRLATLQRDEQ
QTPGVEIVMSIVKNDDHPENIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010937XLOC_010937Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019456TCONS_00019456Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 18..65
e-value: 2.3E-17
score: 73.7
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 19..64
e-value: 2.9E-15
score: 56.0
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 11..71
score: 21.132
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 13..71
e-value: 2.5E-16
score: 58.8
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 15..69

Blast
[Close]
BLAST of TCONS_00019456-protein vs. Swiss-Prot (Human)
Match: MARH2 (E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.554e-39
Identity = 67/185 (36.22%), Postives = 102/185 (55.14%), Query Frame = 0 
Query:   19 CRICQDGRAIEELITPCKCAGTMGYVHSSCLEKWLSRTSRTFCELCNHDFNTRVEVSSFTQWLRSVNSTVSNDRRYMLIDLTCFLLLTPLGFVSSFLCIQGSVLYYRTENFWTGFGLALLTGFLILMYFLWMGVTLRYHYLTFRKWQGNNTTVRLVFSNHRRPENVLPNALGRLATLQRDEQQTP 203
            CRIC +G   E L++PC C GT+G VH SCLEKWLS ++ ++CELC+ +F         T+WL+  +     ++R +  D+ CFL +TPL  +S +LC++G+  + R  +     GL  LT  L  +Y LW  V+ RYH   + +W+  N  VRL       PE    + L     L++  ++TP
Sbjct:   64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLTEWLK--DPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGAQDHLRLHSQLEAVGLIALTIALFTIYVLWTLVSFRYHCQLYSEWRKTNQKVRLKIREADSPEGPQHSPLA-AGLLKKVAEETP 245
The following BLAST results are available for this feature:
BLAST of TCONS_00019456-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARH22.554e-3936.22E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens... [more]
back to top