TCONS_00019420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019420
Unique NameTCONS_00019420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019420 ID=TCONS_00019420|Name=TCONS_00019420|organism=Clytia hemisphaerica|type=transcript|length=1784bp
GAGcctatttaaaaaatgtttgaataaAATGTTTTAAGAGAGAAGGAAAA
TGTCATGCTACGCAAGATTAGAGTCAAATTACCTGTAATTCTGttagttt
ttgctggttttCTGATGAAATATCGTCATGATTTGATGTGTTTGCTTCCG
CCATCTTGGATCTGTTATTTCAAATGATAACCAAAAGTTGCGGATTTGTT
TACTTTCAAGAACTTCAAAATGGTAGCCCTAAACCAAAACAAATCGCAGC
AAGGACAGAAGgaggaagacattgcattgaagcgaaacgAAGCAAAATCT
GTTTATATTTTCACTTAGAAGATGAAACTTTATGTTGTAAAGATATCACC
ATGCTGTCGAGTTGTTTGGCTTTATTGTCTTCAAAATGACATCAAAGTGG
AAATTGAAGATGTGGATGTATTTTCAGGTGAACACAAAACAGAGAACTTC
AAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTTTGAGTGATGGAGAAAA
CTCGATTTATGGTGCATGTCCAATTTTGCTATACCTTGGTGAAAAGTATT
CAAACTTCAAATGTTTCGGTGAAGATGGCAAACAGAACATGATGGTTAAG
TCGATGCTCTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCG
AGTGGTATATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCA
CAGAAGGGTTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAA
ATGAtggaaaatgtatttttaaGACGAAACAAATTCCTAACAGGCTCCTC
GATCACAGTCGCTGATTATTATGTTGCTACGTTGATCTTACAACTTGAAT
GGTTGGAGTTCGATTTCAGTTTATGGCCGAAATTAACAAACTGGCTGAAC
ACTTTCAAGGATTTAGAACTATGGAAAAAAGTTCATGAGAAGCATAATGG
ATTTGTTGCTGAATTGAAGAAATAAACTTAAAGAGACCTTTCAAGATGAA
AAGTTGGTTTACACCTCGATGTTACAATCTTTCAACATATCTAACTCAAT
ATGATAGATATACCATCGTTCAAGataacatccccttctcacagacccgt
taGGATTTTTTTAGCCGGTAGGAGTAGGGATAATGGACTGAaattcgatg
gggattgatatccCCATTCATTTTATGTCTGGGGATTTTTTTGTTGCCAA
GACGGAAAATTCAGTGGGTTGGGAAAAATAGCATTGTATTTTGCAATGAG
GATTGGTTtgtctgattattttcagtggggacgaaAATTTGAGTattatt
ttccaccggggacgacattctggccaattttttccagtgggaagggttct
cagtgagtctgtgagaaggggatgtaagATTATCTTCCAGGCTGTGGTTT
GACCAACAGCCTGGAACAGCCTCAGCAAAATACATTCAACTTCAACCTTT
GGAAGATTGGTATAAGAGGAATACCCAATATCAATGGCTGTTTAAAAATT
GAGTTGTTTTGAACTTAGATAACCTTTCCACAACTACCAAAGGACTTCAA
GAAATAGATTTCAAGGAGAGAGCATACGAAGTGCTCAACTATGTAAAAAT
AAAGCCTAATCTgtgagaaataattttttaaactgcatttttatttacaa
agatttttcagtttttagttATTATTATAATATCTGTACATTTGCTGTAG
TAAATCATGTATAAGCCGTATTTTACTTCTACAATGTTTACTGTTATGAA
TGtcattgcaaaaaaaatattgaccgCAGCCAGA
Run BLAST on NCBI

protein sequence of TCONS_00019420-protein

>TCONS_00019420-protein ID=TCONS_00019420-protein|Name=TCONS_00019420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MKLYVVKISPCCRVVWLYCLQNDIKVEIEDVDVFSGEHKTENFKKMSPFS
EFPVLSDGENSIYGACPILLYLGEKYSNFKCFGEDGKQNMMVKSMLSWAS
SELHQVLGYRVVYPNFMESYQLTGDSTEGLIEKGTKELTKMLEMMENVFL
RRNKFLTGSSITVADYYVATLILQLEWLEFDFSLWPKLTNWLNTFKDLEL
WKKVHEKHNGFVAELKK
Run BLAST on NCBI

transcript from alignment at sc0000326:296596..301586-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019420 ID=TCONS_00019420|Name=TCONS_00019420|organism=Clytia hemisphaerica|type=transcript|length=4991bp|location=Sequence derived from alignment at sc0000326:296596..301586- (Clytia hemisphaerica)
GAGCCTATTTAAAAAATGTTTGAATAAAATGTTTTAAGAGAGAAGGAAAA
TGTCATGCTACGCAAGATTAGAGTCAAATTACCTGTAATTCTGTTAGTTT
TTGCTGGTTTTCTGATGAAATATCGTCATGATTTGATGTGTTTGCTTCCG
CCATCTTGGATCTGTTATTTCAAATGATAACCAAAAGTTGCGGATTTGTT
TACTTTCAAGAACTTCAAAATGGTAGCCCTAAACCAAAACAAATCGCAGC
AAGGACAGAAGGAGGAAGACATTGCATTGAAGCGAAACGAAGCAAAATCT
GTTTATATTTTCACTTAGAAGATGAAACTTTATGTTGTAAAGATATCACC
ATGCTGTCGAGTTGTTTGGCTTTATTGTCTTCAAAATGACATCAAAGTGG
AAATTGAAGATGTGGATGTATTTTCAGGTGATTTAAAACTTTTTTAAAAC
TTGCACTTCTACCTTTTCTCTTTCATTCCACTTTCTGAAATCGAAATTTT
AATAAACGGGCGACTTCTTCTTACTAACTGAAAATGATCTTAAATATTAA
AAACAGAAAAGTCTTAATAAAGTCCGGGGATTGAAAAATTTTCCAAAAAT
TAACAAGCGGGGGGACCGTTTATTTTTTTTCCATTTGTCACTTTTTTCAT
TTTTGAAAAATTTTTATTTGACATTTTTTTCTTAGGTGAACACAAAACAG
AGAACTTCAAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTTTGAGTGAT
GGAGAAAACTCGATTTATGGTGCATGTCCAATTTTGCTATACCTTGGTGA
AAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACAGAACATGA
TGGTATGATATATTCGAATCAATTTTTGATAGTAACGCAACCATAAAATC
AATATCAAAATGATTTTTATAATTTTAGGTAAATATTCCCAAGAACACTT
TTAAATGGTTTTTAAAGAAAACACAATCCACGATGAAAATTAAAAAAGTC
TATTTGATACTGTTTAATCGTTGAATTTCTTGGTATGATTGTACCTGATT
GTAAAATTCTTGAATGTTTAAAAAAAACACACAATCGCACCCTGAGCTAC
CTGCTTCACTTGAATTTACTGATAGATAAACATTGGTTCAATTATTAATA
AGTCGTAGCCTTTCGTGAGCGCTATTAGAATCATAAAATAGCGAACAAAT
GGACTTGAATAATTCAAAGTGATTTAGTGGAATATTCTAAAAGAGGGCCA
AGTAAAATAGATCAAAGTAATCACTACTGCAATTGCATACTATTAAAAAT
AATATTAGCTTGGTGAAAAGTATTCAAACTTCAAATGTTTCGGTGAAGAT
GGCAAACAGAACATGATGGTATGATATATTCGAATCAATTTTTGATAGTA
ACGCAACCATAAAATCAATATCAAAATGATTTTTATAATTTTAGGTAAAT
ATTCCCAAGAACACTTTAAAGGCTTTAAAGATTCCTTTTACTTTGAAGTT
GATAAAAATAAGATAAATTTTCCATTGTGTTTGTAAAGCATTGTGATATA
AGGGAAAATAGAATAAAACTTCTATACAAAGCTCTCTATTTACATCTAAT
TTATGCTAAAGTTACCAAAAATATTTCCATTTCTCAATTTGCTAAGGTTA
AGTCGATGCTCTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTAT
CGAGTGGTATATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAG
CACAGAAGGGTTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGG
AAATGATGGAAAATGTATTTTTAAGACGAAACAAATTCCTAACAGGTGAG
ATTTCGTTCTTTAAAGTGATATTTAATTTAATTTATATTTTAGGTAAAAA
CTATACAATATCTATTTCGTAAAATATTGAACAGAAATACTTTAAAAGTC
AGCTATAGTTTTACCTAAAATATATCATATAAATATAACAAGAAAATCTT
GGGGGAATAACAAGCCGCTGTTACAAAATAATGTAATCGTCGTGTTAAAG
CTAATTGCCCACTTAGAGGGGAATGTCTTGATAAATGTATTTTTCAGACG
AAACAAATTTCTAACAGGTGAGATTTGGTGATTTACTCAAAAGGTCCGAA
TAGTAGGGGTCCGAATAAAAGGTTTTATTATCCGACGCGCGTAAATAGCG
ACATTTGATTGGCTTCTTTGCTGTCCAATATTTTCGAATATATAGCTTCC
ATGGAGGCTATATGTTTCAAAAATTGACGTCACACGACGAGTTCAATATG
ACAATTGAGCATCTTCTTTTTGACGTTACGTCACAAAATAAGAATAAGAC
TTTTGAATAAAAAACTACCAAGAAACCAGATTTAAGAGTTTATAAATTGG
AATAAATTTTGAAAACGAGAAATATTTTAGCGATGAACGGAAAATAAACC
ATTTATTTGGACGCAGTCTCCCCGGGGGGGGTACTACCCTTGTCGACCGA
CGGGGGTGCTCCGCTGAGTTTCGAAAAATGGACCCTACGTGGGACTCGAA
ATTTGCGAAAAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGGACTAGTGGA
GGTTAAAAAAGGTACCCTGACCAGCGGAGCATCCCCGTAACCCATTTTGC
CCTAGTACCCCCCCCCGGGGCAGTCTCATCCAATATGAAAAATATTGGAT
TCGACTTTGTCCAATAACTGCTTAATACTTAATTTTCTTAATGCTGGAAT
AGATATTTTCATCATTAAATTCATTACCCAGGTAAAGTTGATTAATGTCG
TATTTAAGGAAATGGGCCGTAAAATGTTTTTAGACTGTAATTCGCAGGTT
AAATGTTTAAGTCTATTTTTCGCTCCATCTATATTATAATACGTTTAAAT
CGGAACTCTCCCATTCTCGTATGAAACTTTTTTTCTAGCGATTTTCAAGT
AGACGGTAATTTGTTTTAACGCTCTTTCTGATTGATCTTTCAATTTGCCT
TAAATCTGTGCAACATTAAATTCTTTCTTTCTTTTTCCAATCTTCTTTTT
TGAAATTGAACACTCCTCCGTCGTCTTTTTCTTTTTCATTTTGAAATAAC
TAATTTTCAAAGCTATTCAAAGTCTTTAAAGTCACCCTTGAATGTCTGCC
CACGATGACTTGCCACGATGGCTGAACATCTCCAAGCATAATAACAGTTT
TATAAGATACTCTTGATTCTTGTTGATTTTAGCCAATACAGAGTCTTCTT
TACTTGCAGTAGTTTCGATTCGATTTACTTTCAAAATAACTCTATAATTT
CACACCCCTGTGTCACAGACCCGCTAGGACCCTAGCCCCATTTTAGAATT
TGGTTAAAAAGCCCCACTAGTAAATTGACTCTGATTTTATCCCTACTCGA
AATTAGATGTTTAAAAATTGCATTCCAAAACCATCCCACTGGACTTCATA
ACCCTGGAACATTAGAATTTCTATTGGGATTTCAATATGAATTTTTATCC
CCACTGTGGGAATAAGTTCCTTACCTTTTTGTCTAGAATGAAACTTATGC
TGATAGTAGCAAAAATTGCAAAGAAAAATTCCTTTGAAAATACACAGGAA
AAAATGTTTTAAATAGTGTTCCATTTGATGTACAAGAAAATATTATTGTT
CAATTTCCTTGGAAAATACAAGAAATCGTTTACCTATTTCTCTGATAGGG
GCTCGAGTCAAAGATATTATATTATATTGCTGGTTTATTTATTGTTTTAG
GCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACGTTGATCTTACAA
CTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAAATTAACAAACTG
GCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAGTTCATGAGAAGC
ATAATGGATTTGTTGCTGAATTGAAGAAATAAACTTAAAGAGACCTTTCA
AGATGAAAAGTTGGTTTACACCTCGATGTTACAATCTTTCAACATATCTA
ACTCAATATGATAGATATACCATCGTTCAAGATAACATCCCCTTCTCACA
GACCCGTTAGGATTTTTTTAGCCGGTAGGAGTAGGGATAATGGACTGAAA
TTCGATGGGGATTGATATCCCCATTCATTTTATGTCTGGGGATTTTTTTG
TTGCCAAGACGGAAAATTCAGTGGGTTGGGAAAAATAGCATTGTATTTTG
CAATGAGGATTGGTTTGTCTGATTATTTTCAGTGGGGACGAAAATTTGAG
TATTATTTTCCACCGGGGACGACATTCTGGCCAATTTTTTCCAGTGGGAA
GGGTTCTCAGTGAGTCTGTGAGAAGGGGATGTAAGATTATCTTCCAGGCT
GTGGTTTGACCAACAGCCTGGAACAGCCTCAGCAAAATACATTCAACTTC
AACCTTTGGAAGATTGGTATAAGAGGAATACCCAATATCAATGGCTGTTT
AAAAATTGAGTTGTTTTGAACTTAGATAACCTTTCCACAACTACCAAAGG
ACTTCAAGAAATAGATTTCAAGGAGAGAGCATACGAAGTGCTCAACTATG
TAAAAATAAAGCCTAATCTGTGAGAAATAATTTTTTAAACTGCATTTTTA
TTTACAAAGATTTTTCAGTTTTTAGTTATTATTATAATATCTGTACATTT
GCTGTAGTAAATCATGTATAAGCCGTATTTTACTTCTACAATGTTTACTG
TTATGAATGTCATTGCAAAAAAAATATTGACCGCAGCCAGA

Coding sequence (CDS) from alignment at sc0000326:296596..301586-

>TCONS_00019420 ID=TCONS_00019420|Name=TCONS_00019420|organism=Clytia hemisphaerica|type=CDS|length=2616bp|location=Sequence derived from alignment at sc0000326:296596..301586- (Clytia hemisphaerica)
GCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACGTTGATCTTACAA
CTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAAATTAACAAACTG
GCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAGTTCATGAGAAGC
ATAATGGATTTGTTGCTGAATTGAAGAAATAAGTTAAGTCGATGCTCTCC
TGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCGAGTGGTATATCC
AAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCACAGAAGGGTTGA
TTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAAATGATGGAAAAT
GTATTTTTAAGACGAAACAAATTCCTAACAGGTGAACACAAAACAGAGAA
CTTCAAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTTTGAGTGATGGAG
AAAACTCGATTTATGGTGCATGTCCAATTTTGCTATACCTTGGTGAAAAG
TATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACAGAACATGATGAT
GAAACTTTATGTTGTAAAGATATCACCATGCTGTCGAGTTGTTTGGCTTT
ATTGTCTTCAAAATGACATCAAAGTGGAAATTGAAGATGTGGATGTATTT
TCAGGCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACGTTGATCTT
ACAACTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAAATTAACAA
ACTGGCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAGTTCATGAG
AAGCATAATGGATTTGTTGCTGAATTGAAGAAATAAGTTAAGTCGATGCT
CTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCGAGTGGTAT
ATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCACAGAAGGG
TTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAAATGATGGA
AAATGTATTTTTAAGACGAAACAAATTCCTAACAGGTGAACACAAAACAG
AGAACTTCAAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTTTGAGTGAT
GGAGAAAACTCGATTTATGGTGCATGTCCAATTTTGCTATACCTTGGTGA
AAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACAGAACATGA
TGATGAAACTTTATGTTGTAAAGATATCACCATGCTGTCGAGTTGTTTGG
CTTTATTGTCTTCAAAATGACATCAAAGTGGAAATTGAAGATGTGGATGT
ATTTTCAGGCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACGTTGA
TCTTACAACTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAAATTA
ACAAACTGGCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAGTTCA
TGAGAAGCATAATGGATTTGTTGCTGAATTGAAGAAATAAGTTAAGTCGA
TGCTCTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCGAGTG
GTATATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCACAGA
AGGGTTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAAATGA
TGGAAAATGTATTTTTAAGACGAAACAAATTCCTAACAGGTGAACACAAA
ACAGAGAACTTCAAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTTTGAG
TGATGGAGAAAACTCGATTTATGGTGCATGTCCAATTTTGCTATACCTTG
GTGAAAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACAGAAC
ATGATGATGAAACTTTATGTTGTAAAGATATCACCATGCTGTCGAGTTGT
TTGGCTTTATTGTCTTCAAAATGACATCAAAGTGGAAATTGAAGATGTGG
ATGTATTTTCAGGCTCCTCGATCACAGTCGCTGATTATTATGTTGCTACG
TTGATCTTACAACTTGAATGGTTGGAGTTCGATTTCAGTTTATGGCCGAA
ATTAACAAACTGGCTGAACACTTTCAAGGATTTAGAACTATGGAAAAAAG
TTCATGAGAAGCATAATGGATTTGTTGCTGAATTGAAGAAATAAGTTAAG
TCGATGCTCTCCTGGGCAAGCAGTGAACTTCATCAAGTACTTGGTTATCG
AGTGGTATATCCAAACTTCATGGAATCCTACCAGCTGACTGGTGACAGCA
CAGAAGGGTTGATTGAAAAGGGTACAAAGGAGTTAACAAAAATGCTGGAA
ATGATGGAAAATGTATTTTTAAGACGAAACAAATTCCTAACAGGTGAACA
CAAAACAGAGAACTTCAAAAAGATGAGCCCTTTTTCAGAATTCCCTGTTT
TGAGTGATGGAGAAAACTCGATTTATGGTGCATGTCCAATTTTGCTATAC
CTTGGTGAAAAGTATTCAAACTTCAAATGTTTCGGTGAAGATGGCAAACA
GAACATGATGATGAAACTTTATGTTGTAAAGATATCACCATGCTGTCGAG
TTGTTTGGCTTTATTGTCTTCAAAATGACATCAAAGTGGAAATTGAAGAT
GTGGATGTATTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010907XLOC_010907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019420-exon-sc0000326-1575043694:301160..301586TCONS_00019420-exon-sc0000326-1575043694:301160..301586Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1575043694:300735..300901TCONS_00019420-exon-sc0000326-1575043694:300735..300901Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1575043694:299742..299940TCONS_00019420-exon-sc0000326-1575043694:299742..299940Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1575043694:296596..297586TCONS_00019420-exon-sc0000326-1575043694:296596..297586Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1510915933:301160..301586TCONS_00019420-exon-sc0000326-1510915933:301160..301586Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1510915933:300735..300901TCONS_00019420-exon-sc0000326-1510915933:300735..300901Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1510915933:299742..299940TCONS_00019420-exon-sc0000326-1510915933:299742..299940Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1510915933:296596..297586TCONS_00019420-exon-sc0000326-1510915933:296596..297586Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1491911889:301160..301586TCONS_00019420-exon-sc0000326-1491911889:301160..301586Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1491911889:300735..300901TCONS_00019420-exon-sc0000326-1491911889:300735..300901Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1491911889:299742..299940TCONS_00019420-exon-sc0000326-1491911889:299742..299940Clytia hemisphaericaexon
TCONS_00019420-exon-sc0000326-1491911889:296596..297586TCONS_00019420-exon-sc0000326-1491911889:296596..297586Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019420-proteinTCONS_00019420-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:296596..301586 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.5341	30.8746	48.1954	47.8251	24.8559	16.4024	28.6091	29.6326	29.1043	28.4078	16.5521	17.9262	3.72251	3.2646	3.17744	3.43056	2.89724	2.90284	5.54246	3.78359	6.13911	5.29721	11.163	10.0704	3.73533	4.09016	5.48335	5.29748	3.95181	4.64557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004045Glutathione_S-Trfase_N
IPR004046GST_C
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00019420 vs. Swiss-Prot (Human)
Match: GSTT1 (Glutathione S-transferase theta-1 OS=Homo sapiens GN=GSTT1 PE=1 SV=4)

HSP 1 Score: 88.5817 bits (218), Expect = 1.927e-19
Identity = 60/216 (27.78%), Postives = 107/216 (49.54%), Query Frame = 1 
Query:  322 MKLYVVKISPCCRVVWLYCLQNDIKVEIEDVDVFSGEHKTENFKKMSPFSEFPVLSDGENSIYGACPILLYLGEKYSNFKC-FGEDGKQNMMVKSMLSWASSELH----QVLGYRVVYPNFMESYQLTGDSTEGLIEKGT-KELTKMLEMMENVFLRRNKFLTGSSITVADYYVATLILQLEWLEFD-FSLWPKLTNWLNTFKDL---ELWKKVHE 939
            ++LY+  +S  CR V+++  +NDI  E+  VD+  G+H ++ F +++P  + P L DG+ ++  +  ILLYL  KY      + +D +    V   L+W  + L     + L ++V++P F+      G+         T  EL   L+++E+ FL+   FLTG  I++AD    T ++         F   PKL  W    +     +L+++ HE
Sbjct:    3 LELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYLTRKYKVPDYWYPQDLQARARVDEYLAWQHTTLRRSCLRALWHKVMFPVFL------GEPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELMHPVGAGCQVFEGRPKLATWRQRVEAAVGEDLFQEAHE 212
The following BLAST results are available for this feature:
BLAST of TCONS_00019420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GSTT11.927e-1927.78Glutathione S-transferase theta-1 OS=Homo sapiens ... [more]
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