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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019405 ID=TCONS_00019405|Name=TCONS_00019405|organism=Clytia hemisphaerica|type=transcript|length=2502bpRun BLAST on NCBI transcript from alignment at sc0000326:85398..98572- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019405 ID=TCONS_00019405|Name=TCONS_00019405|organism=Clytia hemisphaerica|type=transcript|length=13175bp|location=Sequence derived from alignment at sc0000326:85398..98572- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00019405 vs. Swiss-Prot (Human)
Match: GBRA6 (Gamma-aminobutyric acid receptor subunit alpha-6 OS=Homo sapiens GN=GABRA6 PE=2 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 2.602e-40 Identity = 92/320 (28.75%), Postives = 156/320 (48.75%), Query Frame = 3
Query: 87 SHNKTKIFRQLLQKGYNKHVLPSEHGEPVKVEVNMVIHDFVPRSPLSANSYSMDFLYRSRWKDHRLAFKHLLEPGDDFVLEFGIQSVVDKIWVPGISFDNQIMNIETKVPQANIRMQFFSDGGIRLSQRHQVELACKMDTGDFPFDRQFCDMRMLSYAYDKDHVDLQWEKSNSTHFQTVFGPQNTNMIRMRMKSYSLKSTVRTSMLGKDHHVLIATWKFSRNVNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNTVHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQR 1046
S N ++I LL+ GY+ + P G +V+ ++ + F P S + Y+MD +R W D RL F G +L +V KIW P F N +I + N + +G I + R + C M +FP D C ++ SYAY K + W+K + +++++++ + ++ S S G ++ ++ + R + Y+++Q+Y PC++ V+LS V FWI+ SVPART GI TVL+M T + + P +T ++W++ V F FVF ++EFA V + Q+ +R
Sbjct: 29 SENVSRILDNLLE-GYDNRLRPGFGGAVTEVKTDIYVTSFGPVSDVEME-YTMDVFFRQTWTDERLKFG-----GPTEILSLN-NLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKSEIIYTWKKG--PLYSVEVPEESSSLLQYDLIGQTVSSETIKSNTG-EYVIMTVYFHLQRKMGYFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKR 337 The following BLAST results are available for this feature:
BLAST of TCONS_00019405 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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