TCONS_00019399 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019399
Unique NameTCONS_00019399
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019399 ID=TCONS_00019399|Name=TCONS_00019399|organism=Clytia hemisphaerica|type=transcript|length=1856bp
CTTCAATGCTCGGAAAAGATCACCACGTTCTTATCGCTACATGGAAGTTT
TCGCGGAATGTCAATTATTACATCTTACAGCTTTATCTTCCTTGCATGCT
CATCGTTGTCCTCTCATGGGTCGGTTTCTGGATTGACTATCGTTCGGTTC
CGGCAAGAACGGCTTTGGGAATTGTAACAGTTCTAAGCATGATTACTTTC
ACGAACACTGTGCATGCAGAATCTCCACCAAATGGCAAATCAACTCTGGT
TAATTGGTATGTCTTGGTTAGTTTCATCTTTGTCTTTTTGGGGATTGTTG
AATTTGCAATCGTTGGGATCACTGATAAAATTTGGAAACAGAGAATTCAG
AGAACAATCAAGGAATCATCAAATGTGTCACAGCATCGAAAAAACAACCA
CGGTTTGTCGCCACGGAGTCGCCGTCAATCTGCATATTCTCAAACGCCAT
GTGAAAGCGATCATGTCGACGATTTGAACGTCATTTTTAAACGACAATTA
CAACAGACGGATTCGACAGCTCGTGTAAATGATCTACAACCACAAATGAA
TCGACGGAATCCAAGATCTAACGGTATGTTTTTGGCACCTACAGGAGTTG
CCTTGCAAGAACTAACTAAGGTGCATGAGTATACACAAAAATGGAAAGCC
AAGGCTGGTCTCAAAGAGAAAGTCCATGCTCGACTTTACGAGAAACAAAA
GTTCGGTAAAGACGATGCACACGTGCTTGACCAATTAGCAAGAGTTATTT
TCCCTGTATGTTTCGTCTTGTTCAATATCATTTATGGCGTCGCTGTGTAT
TTTCATCGACAGAAGGATAATTTGGCAAGTGAAGGTTTTATTGCTCCAAA
GAGACTACAATGGCAAGATCAGAATTAGAATCAAAAGCTATATACTATTG
TACTTGTTCAATATAATTTATGGCGCCGCTGTATATTTTCATCGACAAAA
GGATAATTTGGCAAGTCAAGGTTTTATCGCTCCAAAGAGGTTGCAATGGC
AAGATCAAACTTTGTTAAATCAGAAACTTCATGATATTATGATTGTTCAA
TATCATTTATGACTTCGCTGTATATTTTCATTGCCAGAAGGATAATTTGG
CAAGCGAAAGTTTTATTGTTTCGAATGGGTTGCAATGGCAAGATCAAACT
TTGTTAAATCAAGTCTCAAAATATTATGCTTGTTCAATATCATTTATGGC
GTCGCTGTATATTTTCATTACCAGAAGGATAATTTGGCAAGCGAAGGTTT
ATTGTTTCGAATGGGTTGCAATGGCAAGATCAGAATTAGAATCAATAATG
TCCTATTCGTGGTAAAGGGACATAATTACATTGTTGTTGTCAAAAAaatg
agatgccttggagtttttacaagataattcactaattggtcatttaaagt
gatagagatgatgcgttctttagaaaaagtaataagattcttttattact
acatcttaacgaccaaccaaatcaaataagagcttgtaaaaactcaagct
tgtcaaaaaaaatttctactcTTCAGAAGCAAATGCTCCTTCACCCGTGT
CCACGCTACTGCATCAAAAcattatgttcttatgaaagaaagtaccttat
cgggaaaaatttgtcggggaaaagtgacgaaattttggccaagtgacaaa
tattttttcccgacgaaaattttccccggcttTATTGCGTTTACccacta
ccagcaagtgacgaatatttttccccgacgaaaattttcccgacgaagtt
ttccccgataaggtatagatGATACGGGCAAACGAATCGTCATTTTATTT
ACTTGAATTTTTAACCTCGAGAATATTTAGCTTTGGTTTTCGAGACTGGC
AACCCA
Run BLAST on NCBI

transcript from alignment at sc0000326:85398..91596-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019399 ID=TCONS_00019399|Name=TCONS_00019399|organism=Clytia hemisphaerica|type=transcript|length=6199bp|location=Sequence derived from alignment at sc0000326:85398..91596- (Clytia hemisphaerica)
CTTCAATGCTCGGAAAAGGTAAGTGTCTTCCGATCCTCAAAATACAAACA
TGATCAGAATGAGAATGAAAAGTTATTCCTTGAAAAGCACTGTCAGAACT
TCAATGCTTGGAAAAGGTAAGTGTCTTCTGGTCCCGAAAATAGAAACATG
ATCAGAATGCAGATCGTTGAATAGCACTATCAGAACTTAATGCTCCGAAA
AGGTAAGAAAGCGACTTCGGATCCTGAAAATACAAACATGATTAGAATGA
CAACGTCCACATAACGTTAGACAATCGTCCTGAGAATATTAACATAATCT
GAATACTAATTAAAAGTCATTTGCTAAAAAGCATTGTCAGAGCCACTGGT
CTTTATATATCCTTGATCAAGTTTCTCAATTCCGGCCAAGAAAAATCTTT
GTTCGGAGTTTTTTGAAAAGTGGTACCCTAATGGCGGCACTACTCAATAG
TGGTGTAAATGCATCGATAGCGCTAGACCTACGTCCACTCGAATACTTTT
GATGATATAGCGCCGTTCGACGTTAATTTTTAACACTGCAACGGCTCGTG
GGTACCAATTCAAAAGCGGATATAGCTTGGTCCAGGGATATATAAAGGTC
AGTGGTCAGAGCAAATAATAGCGGTGCTAGAGTTTGGAACAAAAACTACA
GTAACCAGTAGCGTGGTGGGCCGACAAAAGTTCGGGCAAACCGGGGAGGC
AATTTTTGAACATTATGATTTTGGCGCCTTCTATGAAATCTAAATATATT
TGTAAAGATTACGCGTGCGAAGCGAGCACGAAAATTTTAGGATATTTTTT
TCTCTTTTAGAATGAAGTGACTTCCATTTCTAGGGTGAAAAAGGGCACTA
CCCACCCCCCATGCCACGCTACTGACAGAAACTTATCTCTATCTCTGGGT
TGTAAACTTTCTTTCCAGATCACCACGTTCTTATCGCTACATGGAAGTTT
TCGCGGAATGTCAATTATTACATCTTACAGCTTTATCTTCCTTGCATGCT
CATCGTTGTCCTCTCATGGGTCGGTTTCTGGATTGACTATCGTTCGGTTC
CGGCAAGAACGGCTTTGGGAATTGTAACAGTTCTAAGCATGATTACTTTC
AGTACGTGTTTCCGACATATTTTAATGATTTAAATGATCAATTTATCTTT
ACCGCAAAATTCAATTCAATCATTTTTGTTGAAAAAAAAAGAACTTTTTT
CAATGGACAAATATAGACACCAGGGGGTACTAGGGTAGGAGAATATTGGT
ACCGGCAAGAACGACTTTGGGAATTGTAACAAGTTCTAACCTTTAGTAAG
GCTTATATATACCATATTTCAAAATCTAGTCCTAAGAATTCACCATCAGA
GGATCCCAACCGGCACACAACGTCAAAACAACGTCAAATCAACGTCCATA
ACGTCCATATAACGTTGTGTGAACGTTAAAATAACGTTGTGTGCCAGCTG
GGATTATTTCAATAATTTCTACAGTAATCTAACCGGGTAACTGCTTTCAA
ATAAATTACCAAGCAACAAATTTAGTGATGCCAAAAATTGCCGATGTAGA
ACGATAAACTCGTTATACATTCATTCACGATCTGGATAACGCTATCAATA
AGTCTCAATAACTTTCTGCATATTGGAAGTGAAGGCTTCGATCTCAGACT
TGCATTTAACTGCAATTAACTGTGTTTGAACCCCAGAAACTTCCAGGTAG
GGTATCAAGGATGCATCTATTTTCACTAATGATATCTTGAAATACTTTGT
TTTCACATATATCTTTGTAACTTTTTTAACCGTTTCTCATTTTAGCGAAC
ACTGTGCATGCAGAATCTCCACCAAATGGCAAATCAACTCTGGTTAATTG
GTATGTCTTGGTTAGTTTCATCTTTGTCTTTTTGGGGATTGTTGAATTTG
CAATCGTTGGGATCACTGATAAAATTTGGAAACAGAGAATTCAGGTGAGA
CCAATTGATAATATAAAGAATTATCTTTCTTCAAAACCTTAACATTTTTT
AACCGTGTGCTCAGACATATTTGATAAATGAAAATACATTAACCCTTTAA
GTGTCAATGTGGTATATATCAGACATGGGCTATGTAGGAGGGCGAACTCC
TTCTAGATCCGGAGATAAAAGCATTTAAAGTTTGAACTAGCGATTTTCTT
TAAAAAAACTTAGAAAAAATGACCGTTGCACTTAAAGGGTTAAGCAAAAC
AAAATATTAAGGCATAAAGAAACGTAGGACGATCACGACAAGATGTAAAC
ATGGCCTGGAATCAGGTGTAACAGAGAACAAACTATAAATAAGAACATAA
GGCTTTGATGTCAAAATATTAAGATCAGGTTAAGAACATTTTAAGTCTTT
GCGGACTCGAAAACGCCCGATTTCATCATCTTTAGAACATTTTTAGACTT
AAAACTTAAAAAAGATTAAGAACATCCGAAATCTTCAAACATTTTGGATG
TTCTTATAAAAAAAACGTGTAAATACTGAAAATACTTTTGACAGACAAAC
AAAAGAACAAAGAAAAAAAAACAGGACGATCACGACAAGATGAAGATAGA
GTCTAGAATCACGGGCACAGTTTAATACAGACCTGTTTTTAGTGGGTGGA
ATATCATTAATTGGTTCTTCCTAGCTTATCCCCCGTGTCTAACGTTACCG
ATGAATTATAAATTTATATCATCTGGTTCCAGAAATAAAAAAAAACCAGC
TGCTACAAATGGCTGTGCATCTAAGATTGAGGTTTTGTGCCAGTTTGGAT
CAAAATGATAGTGCTATGTTAAAGAAATCCTTTCCATGATGTACACCNCT
CTTCCTAGCTTATCCCCCTTGTCTAACGTTACCGATGAATTCTAAATTTA
TATCATATGGTGCCAGAAATAAAAAAAAACCAGCTGGTACAAGTGGCTGT
GTATCTAAGATTGAGGTTTTGTGCCAGTTTGGATCAAAATGATAGTGCTA
TGTTAAAGAAATCCTTTCCATGATGTACACCCCTGTCTCACTGACCCGGT
GGGAATGAAATTGAAGGAGTATTCTGCAGTGGGGGTAGCAAATCCCTTCT
ATTTTATGACTGGGGATTTTGATTTCTATTGTTTTCAATACAAAAATTCC
AGTGAAGACGGCAAATTTACATTAAAATTTTACAGTGGGGATATTGATAC
TTCAATCTTTCCGATGGGGACGAAATTTGAGGGATTTAACTCCTTTGGGG
ACAAATTTTGGGCTTATATTTCCAGTGGGGCGGAGGTCCCACCCGGTCTG
TGACACAGCGGTGTTGATGTAGAAAAGAAGCGAACCTCTTATGTTGTCAA
AATATATAGAGTGTCGTTTATCAGTTCCTTGTTGACGTTAACTTTCAATA
TTATCTAATAATGGAGCGTGTTGAACAGCAGAATGTCAATTAAGAACGCT
AACATTAAGAAAAACACTCAAAGCAACATCAAGTTTCAAAATAATTTTTA
TTTCTTCTTTAACCAGAGAACAATCAAGGAATCATCAAATGTGTCACAGC
ATCGAAAAAACAACCACGGTTTGTCGCCACGGAGTCGCCGTCAATCTGCA
TATTCTCAAACGCCATGTGAAAGCGATCATGTCGACGATTTGAACGTCAT
TTTTAAACGACAATTACAACAGACGGATTCGACAGCTCGTGTAAATGATC
TACAACCACAAATGAATCGACGGAATCCAAGATCTAACGGTATGTTTTTG
GCACCTACAGGAGTTGCCTTGCAAGAACTAACTAAGGTACATTTTTACAT
CTTTTTGTTTTTAATACATTCTGCAATGTGCTTTTCCAGAAGAAAAAACT
TACCAAATACTGTTGAGGATATTGATTTTTCAAAGTATCAAACCCCCTGG
ATATCCTCTCTTATAAAGATGCTTAAGTACCCCTGGATATCGTATTTTTT
ACTTGAATAGACACTTTACGGACTATTTTCGGAAAAGCCCAATATCAGAA
AGATAGGGTTTAAGAGGAATTTCAAAAATCCATTTTCACGAGTACATGAT
TTTCACGGTTCACGCTTTTGGAAGGAAATAATTCGAGTATGTGCGAACTC
GATCTGCGAAAATTGAACCCTTAAGAGAGACTTAGAATTTTGTGAAAGTG
TTACCCTAGCAGAGACAAAAGAGGAGAGGAAAGCTAACCCTGACCCTTAG
AAAAACTATTTTAACTTGTGATATGGAAAGAGACGTGTCTTATGCCTTAT
GCTCACAAAACAAGCAAGTACATGAAATTCTAAAAATCTGTACTTGAACT
ACGCAGATTTTTACACAGAAGGTCTTGAGAAAAAGGTGGTGTCAATTTCT
CTCTGTGATTTGAATTTTTCCTAATTTGAAGAAATTTCTTGAAGATTGAA
TTAGAGAGACAATTGTATTTAACCCTATTCGTACTCGGCCTAGGGGGGCT
GTTTCTGTTCGGAGGTCAAATTATTGGTAATAGCTCCTGAAATAATAGAG
CTTTCGTCATGAAATTTTCTGTAAATTCCTAACTATTATTTTTAGTTTCA
AAATAAATAAAAATTTGACACCTAAATATTTTCACACCTTGTGCATGATG
ACATTTCCGACAGGAAAATTGACACTTTTCCAATACAAATTTATTTTTAA
TGTCATATATCGATTAAACCGTAATTTATTGAATATCTAAGATGAAATAA
GCATTTTAAACTCGGGCAACTTTTTTCTAGAAAGCCTTTGTTAGAAGACA
ATAGCTATTTATAAGAACAAAGGAAATTTTCGGTTTTTGCTCACTTTTGG
CATGATGAGTGACGTCATCAAAAAAATTTTTTGTCAAACCTTATGTGACA
AGGATCTTGTGTGCCAAATTTCATCAAAAAAGACCCACTAGATCAAAAGT
TAAGGGGTGAAACAGGAAAAGCCCCCCCCCCCCCCGTTCTGAACCACCCA
TAAAAGTCTAGGTTGAATAGGGTATACTAGGTTAAGAAATGTGTTTTTCT
TATTTTCTCAAAGGTGCATGAGTATACACAAAAATGGAAAGCCAAGGCTG
GTCTCAAAGAGAAAGTCCATGCTCGACTTTACGAGAAACAAAAGTTCGGT
AAAGACGATGCACACGTGCTTGACCAATTAGCAAGAGTTATTTTCCCTGT
ATGTTTCGTCTTGTTCAATATCATTTATGGCGTCGCTGTGTATTTTCATC
GACAGAAGGATAATTTGGCAAGTGAAGGTTTTATTGCTCCAAAGAGACTA
CAATGGCAAGATCAGAATTAGAATCAAAAGCTATATACTATTGTACTTGT
TCAATATAATTTATGGCGCCGCTGTATATTTTCATCGACAAAAGGATAAT
TTGGCAAGTCAAGGTTTTATCGCTCCAAAGAGGTTGCAATGGCAAGATCA
AACTTTGTTAAATCAGAAACTTCATGATATTATGATTGTTCAATATCATT
TATGACTTCGCTGTATATTTTCATTGCCAGAAGGATAATTTGGCAAGCGA
AAGTTTTATTGTTTCGAATGGGTTGCAATGGCAAGATCAAACTTTGTTAA
ATCAAGTCTCAAAATATTATGCTTGTTCAATATCATTTATGGCGTCGCTG
TATATTTTCATTACCAGAAGGATAATTTGGCAAGCGAAGGTTTATTGTTT
CGAATGGGTTGCAATGGCAAGATCAGAATTAGAATCAATAATGTCCTATT
CGTGGTAAAGGGACATAATTACATTGTTGTTGTCAAAAAAATGAGATGCC
TTGGAGTTTTTACAAGATAATTCACTAATTGGTCATTTAAAGTGATAGAG
ATGATGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTATTACTACATCTT
AACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCAAGCTTGTCAAA
AAAAATTTCTACTCTTCAGAAGCAAATGCTCCTTCACCCGTGTCCACGCT
ACTGCATCAAAACATTATGTTCTTATGAAAGAAAGTACCTTATCGGGAAA
AATTTGTCGGGGAAAAGTGACGAAATTTTGGCCAAGTGACAAATATTTTT
TCCCGACGAAAATTTTCCCCGGCTTTATTGCGTTTACCCACTACCAGCAA
GTGACGAATATTTTTCCCCGACGAAAATTTTCCCGACGAAGTTTTCCCCG
ATAAGGTATAGATGATACGGGCAAACGAATCGTCATTTTATTTACTTGAA
TTTTTAACCTCGAGAATATTTAGCTTTGGTTTTCGAGACTGGCAACCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010901XLOC_010901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019399-exon-sc0000326-1575043694:91579..91596TCONS_00019399-exon-sc0000326-1575043694:91579..91596Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1575043694:90496..90678TCONS_00019399-exon-sc0000326-1575043694:90496..90678Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1575043694:89653..89801TCONS_00019399-exon-sc0000326-1575043694:89653..89801Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1575043694:87861..88130TCONS_00019399-exon-sc0000326-1575043694:87861..88130Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1575043694:85398..86633TCONS_00019399-exon-sc0000326-1575043694:85398..86633Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1510915933:91579..91596TCONS_00019399-exon-sc0000326-1510915933:91579..91596Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1510915933:90496..90678TCONS_00019399-exon-sc0000326-1510915933:90496..90678Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1510915933:89653..89801TCONS_00019399-exon-sc0000326-1510915933:89653..89801Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1510915933:87861..88130TCONS_00019399-exon-sc0000326-1510915933:87861..88130Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1510915933:85398..86633TCONS_00019399-exon-sc0000326-1510915933:85398..86633Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1491911889:91579..91596TCONS_00019399-exon-sc0000326-1491911889:91579..91596Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1491911889:90496..90678TCONS_00019399-exon-sc0000326-1491911889:90496..90678Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1491911889:89653..89801TCONS_00019399-exon-sc0000326-1491911889:89653..89801Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1491911889:87861..88130TCONS_00019399-exon-sc0000326-1491911889:87861..88130Clytia hemisphaericaexon
TCONS_00019399-exon-sc0000326-1491911889:85398..86633TCONS_00019399-exon-sc0000326-1491911889:85398..86633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:85398..91596 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0954546	0	0.083662	0.207983	0	0.246157	0.296889	0.16735	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00019399 vs. Swiss-Prot (Human)
Match: GBRR1 (Gamma-aminobutyric acid receptor subunit rho-1 OS=Homo sapiens GN=GABRR1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 7.362e-25
Identity = 77/244 (31.56%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:   54 RNVNYYILQLYLPCMLIVVLSWVGFWIDYRSVPARTALGIVTVLSMITFTNTVHAESPPNGKSTLVNWYVLVSFIFVFLGIVEFAIVGITDKIWKQRIQRTIKESSNVSQHRKNNHGLSPRSRRQSAYSQTPCESDHVDDLNVIFKRQLQQTDSTARVNDLQPQMNRRNPRSNGMFLAPTGVALQELTKVHEYTQKWKAKAGLKEKVHARLYEKQKFGKDDAHVLDQLARVIFPVCFVLFNIIY 785
            R++ +++LQ Y P  L+V+LSWV FWID R+VPAR  LGI TVL+M T    V+A  P       V+ Y+ VSF+FVFL ++E+A V     +                Q RK           Q    + PC S     L       L    S   VNDL   M     + + M +        +LT   E +   + K+     V  R+         D H +D+ +R+IFP  ++LFN+IY
Sbjct:  279 RHIFFFLLQTYFPATLMVMLSWVSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTV----------------QERKE----------QKLREKLPCTS----GLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMV--------QLTLASERSSP-QRKSQRSSYVSMRI---------DTHAIDKYSRIIFPAAYILFNLIY 474
The following BLAST results are available for this feature:
BLAST of TCONS_00019399 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBRR17.362e-2531.56Gamma-aminobutyric acid receptor subunit rho-1 OS=... [more]
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