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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019395 ID=TCONS_00019395|Name=TCONS_00019395|organism=Clytia hemisphaerica|type=transcript|length=1834bp
AATAAATACAAGAAGTTTAAAGTGACTGATCAGAACATACAAAATTCGTT
AAGGAAGTATCATTCTATAGATATTGGACAAGCAATGCAAGAACTGGAAA
AGGATAATAAATCTTCAGTCGATAGAAAATTCGAAGAATTGAATGCATCT
ACACCGAAAGAATCGAATAAATCGGATAAATCGAGTCTTTTCCCTGCTAC
TCCTTTAATAGATGAAAAACAATTCGATCGATTAATTTCATCGACTCCAA
ACGATTCAAGTGTATTAGATAAATCGAGTTTATCACCTGCTACGCCTTTA
ATGGTTGATCGTCGCTTCGAAGAACTTACGAAAGCAATGAATCTGAGTAA
CGCCTCAACGCCAACCGACCAGATATGTGAACTACATTCTCATTTATCGC
CACAGTCCTTCGCACCGAGTTTCGCATCGACACCGACAACTACCGACAAT
TTATACGATCGTTTATCGGATATTGATTCTCACCGACGAAGTCCGATGAG
TTTCACTTCCGAAGACCGACGAGCAATATCAGAACCATTTTCGTTTTTAA
ATCTAGAAGAACCTCCAGCTGGACCTCCGACGCCACCAGTAAGGACGAAC
ACTGGGAGCCGGTTGAAACACGATCTGAAAAACAAAGACcaaaataacaa
ttttgaaGAATTACGTAAAGTTGAGCGACAAAAATCAAGCGTGTCACAAC
ACTCGCTTCGCCCGGAAAGATCCGATTCGGGAAAATCAAAAACCCGAAAA
TCCGATCAAGTTGAACGCGGACCTTCTTTCAAAAGATCAATTTCACCGAT
GCTACAAAACTTACGGTATAAAGACATGGGTGATGACACTCCAGAAGAAA
TATACCAACCATCAACATTCTTAGCACAATCCAATAAAAATTCATCATTC
GGCAAATTAGACCGTGTCCGAAGTTTCTCAGCTGATCATTTAGTTTCGGA
CGATGAAGTTTTTAAACCTTTTACTGATTACCTTGATGAAAAAGGACTGG
ATCAAGTTGATTTTAAGGTCCCATCTATATCAAGTGataatagcaagaca
ctgttcACACGAAAAAAGAAGAGATTACCAGCGCTTCTTCGTGGCGTCAC
GTCGTTCATCAGCTCCGTGCGCTCAAAGAAAGAAGACCCGTACGAGatcT
ACTTTAGCTCATCTTCGACAAACCTCCCACCTTTTGATATAAATAACATA
CCAAAACAGCAACGTAAAACTCTACTCAATAACGTTACATTACCAAGAGC
GTCCCGTAAAGATTTTGCcagatttttggatgatttctgGATGATTTTCt
tcacacaacgttgtttcaacgttcatatcACTTCAATTGATATTATGGAT
GTCATATGTACGCTGGATGAGCATTCAATGTTGCCGACATTCTCTCATTT
CTTCTCGTCGGCGTACCGATTATAAACAACATTGCTGCTATTGTTCGAAT
CTGTATGATGAATCCTATTGGTCGATCCATTTCGAACGCTCATCCTATTG
GTGGAAAGACCTTGTgaattgatttgattggtcgaaccGCCGTAAGAATT
AAGATGATTGGTCGAGCCGCTGTGTTGATCTTTCGATGAAGAGGAGAAAG
AGAAGGTTTGAACGGATAAAGCTCTTGCCAATGTTTTGTTACGGCCAAAT
AGTAAGATGAGctgaaaagaagaaacaatTCTTAAAAAGTTGTGTAATTG
TTTTTcctaaaggaagaaattatggcgggaatttaatttggtaatataaa
ttttaaaatatgatAATACCTTACTtatataccttaagtggataaatttt
ggtgtGGATTTAAACCAAGAAACGATtcttggcg Run BLAST on NCBI transcript from alignment at sc0000326:334570..341551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019395 ID=TCONS_00019395|Name=TCONS_00019395|organism=Clytia hemisphaerica|type=transcript|length=6982bp|location=Sequence derived from alignment at sc0000326:334570..341551+ (Clytia hemisphaerica)
AATAAATACAAGAAGTTTAAAGTGACTGATCAGAACATACAAAATTCGTT
AAGGAAGTATCATTCTATAGATATTGGACAAGCAATGCAAGAACTGGAAA
AGGATAATAAATCTTCAGTCGATAGAAAATTCGAAGAATTGAATGCATCT
ACACCGAAAGAATCGAATAAATCGGATAAATCGAGTCTTTTCCCTGCTAC
TCCTTTAATAGATGAAAAACAATTCGATCGATTAATTTCATCGACTCCAA
ACGATTCAAGTGTATTAGATAAATCGAGTTTATCACCTGCTACGCCTTTA
ATGGTTGATCGTCGCTTCGAAGAACTTACGAAAGCAATGAATCTGAGTAA
CGCCTCAACGCCAACCGACCAGATATGTGAACTACATTCTCATTTATCGC
CACAGTCCTTCGCACCGAGTTTCGCATCGACACCGACAACTACCGACAAT
TTATACGATCGTTTATCGGATATTGATTCTCACCGACGAAGTCCGATGAG
TTTCACTTCCGAAGACCGACGAGCAATATCAGAACCATTTTCGTTTTTAA
ATCTAGAAGAACCTCCAGCTGGACCTCCGACGCCACCAGTAAGGACGAAC
ACTGGGAGCCGGTTGAAACACGATCTGAAAAACAAAGACcaaaataacaa
ttttgaaGAATTACGTAAAGTTGAGCGACAAAAATCAAGCGTGTCACAAC
ACTCGCTTCGCCCGGAAAGATCCGATTCGGGAAAATCAAAAACCCGAAAA
TCCGATCAAGTTGAACGCGGACCTTCTTTCAAAAGATCAATTTCACCGAT
GCTACAAAACTTACGGTATAAAGACATGGGTGATGACACTCCAGAAGAAA
TATACCAACCATCAACATTCTTAGCACAATCCAATAAAAATTCATCATTC
GGCAAATTAGACCGTGTCCGAAGTTTCTCAGCTGATCATTTAGTTTCGGA
CGATGAAGTTTTTAAACCTTTTACTGATTACCTTGATGAAAAAGGACTGG
ATCAAGTTGATTTTAAGGTCCCATCTATATCAAGTGataatagcaagaca
ctgttcACACGAAAAAAGAAGGTACGTACCTAGTCTAAATCTAGActact
aatttaaaactttatacTAAAATGCTACTAAGATTATTTCAAACTAAAAA
GAGAGATGCGCTCCAGAGAGAGAGGAAAAATTATTGTATTATAAAAAGTC
AATCGCTCGCGGTTTTTTTATAGCAGACTTACTCCTTTTCGGCTTTGTGG
CAGAGCTACCCTTATATAATGGTCTGGAAATCGAGACTAGTACGTTCCTG
TTTCCGGGCTTAAACAATGTTCATAGATTGTTCTTTATATCCAAGCTTGC
ATACAACATTATTTTGACGTTTAACTTATGTCacaacgtctatataacgt
tagatgaacgttgaatcAAAGTTGTGGTCCTTGATTCGATTATTCCATTC
TGTATGTTAACCGTTACTGTTATCTAAGGCTGGGAATTTCTTTTCTTAAA
TGTTAGCTAGAATTGAgtcttattgttcttataaaaaagctctCATATGT
CTTGCCTATTCTCGAATACCGTCATTTCTCTAATTAGTTGGGAAGAAGTC
CTTTAATTTATTTCCTCTAAATATCAAGTTTTTTGTGTCACCTTAGagcc
tctctctaattcgaatgctCACAACTTATGTCTTTTTCAGTAGATTTGGG
ACATGGACAtggacggacgaaaaatgtctTTTGAGATTTGTAGAATTTTG
TATGAATGTttgagttttctttttttgtgtATATAGAGATTACCAGCGCT
TCTTCGTGGCGTCACGTCGTTCATCAGCTCCGTGCGCTCAAAGAAAGAAG
ACCCGTACGAGGTAAGCTTGTATTTCTAAAACAATTCTTACCATTCCAAA
ACATGAAAtaaaaaccttcaaaaatattaagaatgaTTTTATTCCCAATC
TTATTCGAAAAAAGCGCAAAGGTAGAGCATTCAGCTGCGGTATACATGAA
ACCAACCACCTGTTCTGTATCAAAGAAAAATATGGTACTGACGCCTCCCT
TTGCTCAAAAACTAAAGAGAAGGGCTAAAAAGTAAATAGCGGAATCTAGG
CACAGAAAATGATACCCTGCACTACTTTTAGGTAGACAGCTGAGGAAGAG
GGTGCCTTCGGGTCGCCCACAAAAGcgttcaaaaaacttttttattcact
gattctttttcatttcagatcTACTTTAGCTCATCTTCGACAAACCTCCC
ACCTTTTGATATAAATAACATACCAAAACAGCAACGTAAAACTCTACTCA
ATAACGTTACATTACCAAGAGCGTCCCGTAAAGGTTAgaaatcgttttct
ttactaAACATAAGAATTACTTGTATTAATAAGTAAAAGTCGAAGACTAG
AGTCGAATTTCCTATTAAGACTTTGATTTGCACAGCCCGAGTAGTTCTTG
AACAAACGGTAGAGGAAGTAACATTTACCACTagggaatttgaaaaattt
caaaacgcgaaaaacaaagaaatttctCTAGATTCAATCTTTTATATGAA
ATGTAGCGCAAATTTTAAGGCCTCGTTTTTTCTTGCtcgagaaaggttga
agattcgcCTCTCTAGCCTCCGACTTGCAACTAAATGGCTTGCACCACCC
AGAGCAACACGAATGATTCTAAACTTTCTTTTTGTGTCTTGTCTTGTGTG
GGTCTGTTTTCGTTAGATTACTTCACGTTAGTCTTTTCGCATCGAAGAGT
TAGGTACAAGCTAACTAAAGTCAGAGCTCCCGTAATGTAATGTGATGCAA
AAAGACATTTTATAACTTTGGAAAAGAATTTGCCGAAAGATTTAGATAGG
GCGCCTGTTTTAGGTTTTCCTGTGATGCAATGATGTGTCTACGTCTACGT
TTCTTGGGAGAAAATGGGAAAGAATAAACCTTGCTATATCGTTTATAAAT
AGATTTAGGAATTACCTATGTATGTTAGTTAAAATAAGGACCACTAAACT
GTAAAGCCTTCTTTGGGGATTGTACGCTTTTGTAAGCCTTCAAGAAGTCT
TTCTTCTTGATAagctttattcatgatattcatgacgcaATGTTTTNTGT
TTTCGTTAGATTACTTCACGTTAGTCTTTTCGCATCGAAGAGTTAGGTAC
AAGCTAACTAAAGTCAGAGCTCCCGTAATGTAATGTGATGCAAAAAGACA
TTTTATAACTTTGGAAAAGAATTTGCCGAAAGATTTAGATAGGGCGCCTG
TTTTAGGTTTTCCTGTGATGCAATGATGTGTCTACGTCTACGTTTCTTGG
GAGAAAATGGGAAAGAATAAACCTTGCTATATCGTTTAGAAATAGATTTA
GGAATTACCTAATGTATGTTAGTTAAAATAAGGACCACTAAACTGTAAAG
CCTTCTTTGGAGATTATACGCTTATGTAAGCCTTCGAGAAGTATTTCTTC
TTGATAagctttattcatgatattcatgacgcaatgttttctacggaaag
accccggtttttgccagtagtggtgaattttatacaacttttatctagtt
taaatttgccactactggctaaaacgggggtttttccgtagaaaacatta
cgtcatgaatatcatgaatctgTAACTTAATAACTGATTTAAATTACTCA
TGATTAAGCTGTAatattaataattaaaataatgaTTAAAAGTCAAAAGC
TAGAGTCGAATCTTCTAGATATTTTAGATTTGAAGAGCTCcgacctcgtc
cccgtgtatcccaggctttatttatgttactgattgacgccatagaatat
tatctagcgttatcagtaagcataaaaaagctgataatacgcagggaacg
aggttggaaGAGCTCTActtataattcatgatattcattatgtaatcttt
tctacggaaataaccaatagtggcaaattttagctaaagaaacattacgt
catgaatatcatggaTAGACATGATTTGTGCGGCGCGTGTGGTTTTCATA
TAATCACCCGATAGGAAGCAACATTTCACCAGGGATTTTTAAATATGTAA
AATGCGAAACAAACAAAGTACTAGATTCAATCTGTGATTTAAAATACGAA
ATTAATGTTAAAGTTTCACTTTTGCTTGTTTGGGAAAGTTTGAAGACTCG
CCTCTAGCCTTCGTCTTAAAACACCTTAAATTAAAACCCTTTAAAACTCT
AAAcataaatataaattttaaactttaaaaggATTCGATATGGACGAGCT
ATTCGAAAGCAAGCCGATCGACGGAGTATACAGGACACACAGCATTGAGC
GCCATCATGGTACACCCACACCGAGTCCACCTCAATCGgggtacaaaaac
aaaaacaacgtCAAACATAATCCAGCTAATATCGAATTCAACCGAATGGA
CCAATCATTGAGAGGGACTAGTCAATACGTTaaagaaatcgaaaaacaaC
AGGCTAAAGACTATTTACCAGTACACGATGGGCGGGAGGACGCCCTTCCT
TTGGCGGGCCGAATGCGGACAAATTCAAACTCGCGTAAAGAACGTGTTAA
CGCTATCATATGGTaggagatgccttggagtttttacaagatacttcact
gattggtcatttaaagtgatagagatgacgcgttctttagataaagtaac
aaaattattttattacatcttaacgaccaaccaaatcaaataagagcttg
taaaaactccagcttgtccctatGGTAGAGATAAAAAGCATTTTCACATA
tatgatgtttttaatgaattttaggTCTACGANGTTAACGCTATCATATG
GTAGAGATAAAAAGCATTTTCACATATAtgatttaaaaatgaaatttagg
tCTACGAAAAATAACATGGCGATATCTAAATTAAAATATTAATTATAACT
AAAAGTATTTTAAATtgttaaaatatataaaaactcCTGATAGAAAGGTA
GTAAGATTACTAAACTGTATAATTCTTTTAATGAAGGACCTGTTCGTCCC
TCATCAATTCACCAAATGATGATGATTCCCATGACGAGTTACTTTTTTCC
GTTCTTTGAGCAGTTTCAGAATAAAACCATTAACCCCCTGTGGATGACAC
TgtcttttggagtttttttttacGGATGACAAAATGGAAAGAGAACTCTT
TCGCTCTCAGTCCATTCATATTCTTGAAAATTTACGATTGTCACTCCGCC
GCCTACTTAGAAAAACGTTTTACACGGGACCTCAGGCCTTTTAAGAAAAA
TGTTAATGTGATAAAGTTTAAAGGGTGGTTCTATACCCTCATATTTTCCT
AATTATTTGGTCATCCGTATCGATAAATCCgtaaaatttgatttattttc
ttgcTAAATATGTATCGGAAAatccaagattttttcttaaaaactcaTGA
ATCTTACGGAaatcctgaagtttttcaaaagttaattGTTACGGAAATCC
ATGTCGTCCACAGAGGGGTAATGGACTATAACTGGAACCACCTTTCTATT
CTGAAATATATTCTAAGTCTTGATCATACAATAGTTTTAAATGCGATTTA
TTGATTTCCATTTAAACAAAAGAGCGTACATTcgcccatttttctaaaat
tggaACCGCACAGATATCATATATAAAATACACTTGATAGAGCTGCTTTA
TGCCacggcaggtgaagcaaaataattgtGACATCACTCTTTTGAAGCTA
GCAAATAATTTTGCTTCAGTTAGGGACAGAAAAGACTATTTAGTATTTTA
TATACGATATCTTTGGTTGCAACTAGTAATTGTTTTGTATCATGTTTGCA
GTAGCAATTTAAGTTTTAAAACACCAGTTGTTGCTTAAAATGTCTTGACT
CTCAGGGTCAGTTATGATAACGTCTTGTTcgtcactttttttttgatgtt
tcgaTCTTTGATCAGATTTTGACTCCATATTACACCCCATTCTCACAGAC
CACTGgaaaaatcgaccaaaataccgtccccgggggggggggggNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGTAGTTTCAGtgttcccactgaaaataatccaA
TAAACCAGTCCTCACTGCAATATTTTATaccatttttcccatccccactg
aaatccccagccataaaaaatatagaggaatatcaatccccatcgagttt
cagtccattatttttatcctccactggctgaaaaaatcctatcgggtctg
tgagaagcgGGTGTTATATTCTATATAAATCTGCAATATGATCAAAAAAA
CTCTCAAAAGGAGAGTAACATCTAATCACAAAGTCACATTCATCATCATT
CATTACCAGATTTTGCcagatttttggatgatttctgGATGATTTTCttc
acacaacgttgtttcaacgttcatatcACTTCAATTGATATTATGGATGT
CATATGTACGCTGGATGAGCATTCAATGTTGCCGACATTCTCTCATTTCT
TCTCGTCGGCGTACCGATTATAAACAACATTGCTGCTATTGTTCGAATCT
GTATGATGAATCCTATTGGTCGATCCATTTCGAACGCTCATCCTATTGGT
GGAAAGACCTTGTgaattgatttgattggtcgaaccGCCGTAAGAATTAA
GATGATTGGTCGAGCCGCTGTGTTGATCTTTCGATGAAGAGGAGAAAGAG
AAGGTTTGAACGGATAAAGCTCTTGCCAATGTTTTGTTACGGCCAAATAG
TAAGATGAGctgaaaagaagaaacaatTCTTAAAAAGTTGTGTAATTGTT
TTTcctaaaggaagaaattatggcgggaatttaatttggtaatataaatt
ttaaaatatgatAATACCTTACTtatataccttaagtggataaattttgg
tgtGGATTTAAACCAAGAAACGATtcttggcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019395-exon-sc0000326-1491911889:334570..335640 | TCONS_00019395-exon-sc0000326-1491911889:334570..335640 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1510915933:334570..335640 | TCONS_00019395-exon-sc0000326-1510915933:334570..335640 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1575043694:334570..335640 | TCONS_00019395-exon-sc0000326-1575043694:334570..335640 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1491911889:336356..336430 | TCONS_00019395-exon-sc0000326-1491911889:336356..336430 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1510915933:336356..336430 | TCONS_00019395-exon-sc0000326-1510915933:336356..336430 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1575043694:336356..336430 | TCONS_00019395-exon-sc0000326-1575043694:336356..336430 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1491911889:336788..336902 | TCONS_00019395-exon-sc0000326-1491911889:336788..336902 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1510915933:336788..336902 | TCONS_00019395-exon-sc0000326-1510915933:336788..336902 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1575043694:336788..336902 | TCONS_00019395-exon-sc0000326-1575043694:336788..336902 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1491911889:340979..341551 | TCONS_00019395-exon-sc0000326-1491911889:340979..341551 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1510915933:340979..341551 | TCONS_00019395-exon-sc0000326-1510915933:340979..341551 | Clytia hemisphaerica | exon |
| TCONS_00019395-exon-sc0000326-1575043694:340979..341551 | TCONS_00019395-exon-sc0000326-1575043694:340979..341551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:334570..341551 + |
Blast
The following BLAST results are available for this feature:
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