TCONS_00019382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019382
Unique NameTCONS_00019382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019382 ID=TCONS_00019382|Name=TCONS_00019382|organism=Clytia hemisphaerica|type=transcript|length=2315bp
GTTCATTAAAAGCGCTGCCATGATGTTTCCAACGAGCTAAGACAACGCTA
CATTAATCAACATAGGTTGGGACTAACTGTCTAAGAAATTTCACAGCCAA
CCAGATCTTAAAGAAAataacagcaacaacaacattGGAAGAAACACTAG
CAGTATTAACATCAGCGACATCAACAACTTGTAGCAAGTCCAGCAATAGT
ATCATCAAAACAGCCAGCAAAACTAACATCCAACCACATATGCAACATTT
TTGCTAAACATTGATACTAAAACTATCAGTTGGACCTCAGACGACATCAC
CAACAACTTACCCCAATGGAATAAATAAATTTCCATGGCCGGTGAATCTG
AAGAAAAACTAAATCAAAAAGACGAAGAACAAAAAATCGAATTGACAACA
ATGACCATTAAAAACGAAGTTATTGACGATGTTTCCCCGACTGGATATCC
AAGACCAGAGTCTGCGTCTCCTTCTGGTTACCCAAGACATTCATCAACAT
CGTATCGGAGATATCCATCAGAGAATCAAACTGCTGAAAGTCGTTCATCA
CTAGAAGACTGGGATGATGAGCCTGAATCACCTTCCAGATTCCCTGCTTC
TAAGGTGACACTTATAAACGAGGAGCCTGAACAGCGTGGTCAGCATTATT
ATGAGAGCTATCAGACAAGACAAAGTCCTGACCCACGAAGACGCATCGAT
CAAGAACTAAACTTAGATGCGGACAGCCAATCACCGAAATCTCCTGGCTT
TTATAGTAATGAAACTAGAAGAAGTAACCCCGATTTATCAAAATATGATC
GCCAATCTTCATCGCAAAGAAGTAGTGGCTCGCCTCACGAAAGTATTGAG
CATTCAACCATAAAAAGACAATTTTCAAGACCAGATGAGTCTTTAAAACG
GAACACAATTGTTGAGCCACCACCGGTAAGAGAACATCGCTTTGAAGGTG
CTTATAAAACAACTGGTGGTGATGCAGCTGAAAAAGTCTGGCTATATGAA
GAGAATATCAAAAAGCTTTACAATCTGGATAAGAACCCGCAACGTCAAAT
ATTTCTGGACGAATTTTTCAGCTATAGAAGAACTCATGGCCTTTATTGCA
AGATTCCCGTTATCGCCCGAAAACCTTTAGACGTGTTTTTACTGTATAGC
ATCGTTCAAAAGTACGGTGGCTTTGAACAGACGATGAAAAATAGAATGTG
GAGCCAAATAGCCAGAGAATTGGAATTGCCGAGAACGATGACCAGTGGGG
CGTTCACGCTGAAATTAAAGTATATTCGCCTCCTGTATCAATTCGAATGT
TACAAAGTCAAGAAACAAGTTAACAAATCAATACTATTCAATGAAGCATC
CATCTTACCAGAACAGATGTCACAGATGAATGATCACGTCCCCCAGCACC
TATCAATCCACCAGCAACAGAATCCAGCTTATAGACAACATCAACAAACA
TCGAAATCATCTTCCAATGACCACCGAAGGGGAAATGATGATTATTATAG
GGAACGACGTGATGAACACTCCAGAGAAAATATGATGAGAGTAAAACAAA
GAGATGACCAATTCAATGAAAGACCAACTTTTTCCAAAACCGATCGGAAT
CGCTATTCACCACACAGAGATACTGGGGGCTCATCACCATCCTCAAACAA
CGATATCGTTTTACGATCATCTACTCCACCTTCTTCCGATCGCAATCATC
GGGATCACCATCGGCGTCTTCCACCTTCGATTCATAGTCGTAAAAGAGGA
GTCCATGAAGAATTGGACGATGATACCGATACAGGAACATCGGGATCACA
ACCTAAATCGCCTAGACTGGATACACAATCTGTGTCTAGATTTTCTGTTG
ATGTTGTTGAATCTTCGAGAGATAGTATTGTGTTAAAGGTCAGAATGAAC
AATGATGTTTTTGAAGGTGTTCTTGAATGCACGCAGCGGGGAGATATCAG
AGATTATGCTGCTGAACAAAAAATGTAACCAAGAGAGAAAGAATATACTG
CACAGAGACTACGAAGAAAAGTGTCATCTgagtaattcatgatattcatg
acgtaatattttctacggaaagaccccagtTTGTGTAAGTAGTGGCAAGT
TTTGAACAACTTTTCTCTAGCTAAAACTcaccactactggcaaaaaccgg
ggtatttccgtagaaaacattaagtcataaatatcatgaatttgtaAATT
GTACACCATGTAATAAAACTCAGACACGGTAAGAGTGATACAAGGATATT
GTAAATCAAGAAGTAAACAAGGATTCTAAAATACCATTGAGTCATCGCCA
AAGTATCATTAAATC
Run BLAST on NCBI

transcript from alignment at sc0000326:251074..269260+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019382 ID=TCONS_00019382|Name=TCONS_00019382|organism=Clytia hemisphaerica|type=transcript|length=18187bp|location=Sequence derived from alignment at sc0000326:251074..269260+ (Clytia hemisphaerica)
GTTCATTAAAAGCGCTGCCATGATGTTTCCAACGAGCTAAGGTAACATAG
AatataaattaaatttaaaatatatatatagaaGTGTATTATCTAAGGTC
TATTgtcctctatgaaacaatcttataTCTTTATAATTTATCGATCTTGT
CATtccattttttgtcaattctagttTCAATTTCCCTACGGACGGTGCAT
TTACAACATTGGTTGCCAAACCATTCCAAATATCAATGCTCCTATGACTC
CTATAGTAAAGTGAATTCGTTTGGTATCCTCTAATGCCGTCTTCAGAAAA
ATTCCTCTTTAATTCGAGATTGTGCTTACAATATAGGCTAGATTATACTA
CACAAATGAACCTTCTTCTTCTCGTTTTGTTTTACTATTGTTTACTAATC
AAATAGTTTGTGGCTAGAATCATGAttgtaaaattaaaaataccctaata
aattatttttcctcGTCCCATTTTTATATTACATTTCCCACAATAACAGG
ATCGTCTAATAAATATCGTATAAATgtgtatcattgttttgatttaacct
AATGTAGATGTAAGAAGCAATTTGTGATATATATGTCTTCGCAGTCAAGG
GAAAATATATTATAATAGCCGAATTCCTTTTCACTGTTCAATTCATTTCT
TCGCAGTCAAGAACTTTAATATTTAAGTTTTTGTTCCCAACTTAATTTTC
TAactgaaaacaatggaattcaactCCTCAGCCATAAAGAAACATGGGCA
TATCAATTTCCatcaagtttcagtccgttatatCCCTATTGGTTAAAAGA
ACCGCACTGGGTCGGTGAGAAGAGGATGTTAATAAACAATAGTGAAAATA
tagtgaaataaatagaatcacaaagtgcgcaaaaaaattccaataaattc
gagtgaaatttcaagaaataaagaattaaCTTACAATTGCTACACGGTGT
TTCATGCTGGTGCAATCTACATACAATGCATTTGTATTGTAGATTTcgtt
tcaaataaataaaaaacaaatcttaaTGCTTGTATACTTCAACCATATCA
CTGATTTTAAGCCAGATCTTATGGCTTGGTAGGTTCATGACTTGTAAAAA
CGTTCTTCGTATGAATGGTTTCTATAACCACCGACAAGTCTTCTGGCCCT
TTATTCACTTTCAATTGCGTCAAAGTGTATGATACAATATtgcaatatta
tttttttaacaataaatAGATCATTGTGATCTTACCTGGATTTCAGTTCA
TTGCGCTGTTATTTTTCTTAATATATTACATTTAAGAAAAAATCGAGTAC
TTCGCAAGCAGAAATTACCTAATCTTCTTCCAATTGGAGTGCCAATTTTA
GTGACTCCTCAGGAGAGTTTTAAAGTAAACAACTACTGTTGTAGTCTTTC
CCATTGAAAAGTGATTCTTATGGTTTTTGGGTTCAGAACTTTTATCTCTG
GTAAATCAAACGTATTTTTGATCACATGTAATAAAAACACCTAAATTTTA
TCTTATCAAATTAGTATTGATGcccttaactttttgagttttaattcTTA
AAATGTACCTGAATTGCTCtatttttttagtgtttttatgcAATCGTAAA
ATTTGGCtggcattaaaatgttcttatgttATTATTGTTGGCCATCAAAG
TCTTCCTAAAGGTTGCGTTAgcataaaaattgtaaaataatttttcttga
tGTGATTCAATTGCAACTGGAATTTAAATTTAAGTGGTTTTTTTCGGGGT
TTAGATTTTGTTGATCTTTTGGATGTTTTATCTGGTGAAGGTACATAACC
AATGTTAAATTCTATTGTTGCAATCATTCTAAAGAAACTGAGTTTCAATG
GAAATCAGCTAATATAATTTTCAACCAATTGGATTTAACCATCTCGAGGG
GAGGAAATACTGTAAactattttgtttatttgtttatttgtaAATCACAA
TAAAGTAATACTTAGTatatgcttgttttttttgtgatATAATTTCATGT
CAAATaatagcccggggtccacttaaagctttttttatagactggatggN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATATTTA
AGTTTTCGTTCCCAACTTAATTTTCTAactgaaaacaatggaattcaact
CCTCAGCCATAAAGAAACATGGGCATATCAATTTCCatcaagtttcagtc
cgttatatCCCTATTGGTTAAAAGAACCGCACTGGGTCGGTGAGAAGAGG
ATGTTAATAAACAATAGTGAAAATAtagtgaaataaatagaatcacaaag
tgcgcaaaaaaattccaataaattcgagtgaaatttcaagaaataaagaa
ttaaCTTACAATTGCTACACGGTGTTTCATGCTGGTGCAATCTACAGACA
ATGCATTTGTATTGTAGATTTcgtttcaaataaataaaaaacaaatctta
aTGCTTGTATACTTCAACCATATCACTGATTTTAAGCCAGATCTTATGGC
TTGGTAGGTTCATGACTTGTCTAAACGTTCTTCGTATGAATGGTTTCTAT
AACCACCGACAAGTCTTCTGGCCCTTTATTCACTTTCAATTGCGTCAAAG
TGTATGATACAATATtgcaatattatttttttaacaataaatAGATCATT
GTGATCTTACCTGGATTTCAGTTCATTGCGCTGTTATTTTTCTTAATATA
TTACATTTAAGAAAAAATCGAGTACTTCGCAAGCAGAAATTACCTAATCT
TCTTCCAATTGGAGTGCCAATTTTAGTGACTCCTCAGGAGAGTTTTAAAG
TAAACAACTACTGTTGTAGTCTTTCCCATTGAAAAGTGATTCTTATGGTT
TTTGGGTTCAGAACTTTTATCTCTGGNATTTGTATTGTAGATTTcgtttc
aaataaataaaaaacaaatcttaaTGCTTGTATACTTCAACCATATCACT
GATTTTAAGCCAGATCTTATGGCTTGGTAGGTTCATGACTTGTAAGCGTT
CTTCGTATGAATGGTTTCTATAACCACCGACAAGTCTTCTGGCCCTTTAT
TCACTTTCAATTGCGTCAAAGTGTATGATACAATATtgcaatattatttt
ttttaacaataaatAGATCATTGTGATCTTACCTGGATTTCAGTTCATTG
CGCTGTTATTTTTCTTAACATATTACATTTAAGAAAATCGAGTACTTCGC
AAGCAGAAATTACCTAATCTTCTTCCAATTGGAGTGCCAATTTTAGTGAC
TCCTCAGGAGGGTTTTGAAGTAAACAACTAATGTTGTAGTCTTTCCCATT
GAAAAGTGATTCTTATGGTTTTTGGGTTCAGAACTTTTATCTCTGGTAAA
TCAAACGTATTTTTGATCACATGTAATAAAAACACCTAAATTTTATCTTA
TCAAATTAGTATTGATGcccttaactttttgagttttaattcTTAAAATG
TACCTGAATTGCTCtatttttttagtgtttttatgcAATCGTAAAATTTG
GCtggcattaaaatgttcttatgttATTATTGTTGGCCATCAAAGTCTTC
CTAAAGGTTGCGTTAgcataaaaattgtaaaataatttttcttgatGTGA
TTCAATTGCAACTGGAATTTAAatttaagtgtttttttttcgggGTTTAG
ATTTTGTTGATCTTTTGGATGTTTTATCTGGTGAAGGTACAGAACCAATG
TTAAATTCTATTGTTGCAATCATTCTAAAGAAACTGAGTTTCAATGGAAA
TCAGCTGATATAATTTTCAACCAATTGGATCTAACCATCTCGAGGAAATA
CTGTAAactattttgtttatttgtttatttgtaAATCACAATAAAGTAAT
ATTTAGTAATTGCTCCTTTTGTTTGTGATATAATTTCATGTCAAACAATT
ACACCTTTCCGCCGACATTGGCATATGCAGGGTTAAAAAGGGTAACGGAG
TCATTCTGCAACTctacttttgattttgaaatctcTTTTCAAAGCCCAAT
AATGACACCAGTTTCTTACACCCAATGGATCGCACAATAACCATTAGATA
GCTCTTCATTAGCATTAAAACTTGTATCATgttttgaaaaactgaaaagt
tgGATTCTTCAAAAAACATCATTGCAATTGTTGTCCTGCTTTTACAGCGT
ATACCAAAAAAGAGTGAACACATTTTTATATAaggtaaaatcctcaaaac
ttaaTATCCAAACTGGGcttagaataattgaaataagaCTAAAATTCTCC
GTTCAATTAATAGATATTAATTtaccaagatgattgaataggttttttAG
ATAGAAATATTAAGTATGTACTCtagtctcccgaatagacgccccccccc
gctaattgttaagagacaaaaaaatccatccccccgctcttattaagacc
ccccgctaattaaattcgaataattcaatattttattacagtgtagatag
accttaaacttgctaaaattttcctttttgttagtagtggttcttatttt
acgtgctcatttgttaaagtttattttttgttgttgaaattgataccagt
tagaaaaaattctgtcttcaaattacccccccNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCCCCCCCCCTCTTATTGCACCCCCCTTCCCCGCCGCTT
ataagaatttagaaaattttcctacccccctgcttattcggaccccccgt
ctattcgggagacaagagtaagtgataaattatgagaattttactttgta
aaaatttgttctcttttttCGGGACACATTGTATACATTCTGATGAAAGG
TTTGCTCCTTTCTCCTTTAtaaacaatagacgatatcggctttccgaatt
ctccccgaatgactACCCATGTGGcattgttagggttagggttatcgtcc
gtgaatttttttgcgcaatgcatcatgggtaatcattcggggagaattcg
gttaagccgatatcgtctataaTCGGTATTGCGCATTATTTATgattttc
tttctgttctatcagatttatttatttattaaaattgcTTATCTTGGTTT
ATTctcgaaaaaaattctttctaatacacatttttttataaaaacaaaaa
atataagaatataTTGATTCAATGGctaaaatgctaagaacaagttaaga
acattgtaaatggctttggggactctaaagcatccgatttcttaggaaaa
cggaAAAAAATACCCaagaaattgtgaaaataagaacgtattgagaacat
ttttaggcttgaatctcaaaaagctaagaacatctgaagcCTTCAAAAAA
TAAGTCATTTCTTCGATTGCTTGCTTTTTCACTTtctattttaatgactt
taatGTGAACATTTTCAATCAATCATTATTGCAATTGCTTTATTTACTTC
TCAACATTTTAGATTTACATTTAATTTCCACTGGTCAAGGTACCTTATTT
ACCTCCATTAGGCTAGATAGTATCGCAAAAACAtcgaaatagaaaaatca
gactTTCGTAATGTTCCTTTTTAGGGGGATTTGGAttaaaaatttcgaga
aaattttggaGTTTCAGtgccacgtagggtccatttttcgaacttcagcg
gAACACCTCGTCGTTCGGCATCCCCCACCCCAGGGGTCCTAGCGCTTTCA
GATTAGAAGAAGCAAGTCAGTCATAGATAATTTCTTGTTTGATTTAAAGT
TAAAACAATGGACTTTCACATTTTCATTACTTAAGCGTGATCAATTGCTC
ACAGGACTTCCCTTTGTCTCAAACGATAAattaattcttatttttttcat
tcgtaagcattcatttttttctttgactAACCTAGTAATTTTTTTCTGCA
ATAATTGCAATTATAGGCTTGAAATGAGCGCTGAAACCATTGCTGATAGA
GAAGTAATTAGCAATTCGATAATGAGACAATAAATTATAATTTAATCACA
TTATTCTATCCTGACAATGATAAACATCGTCCGCCAACTTCATTATGTTC
TGACCTTTTAGAACACATGAAATATAATGATAGCTTACTTGTTGTCAGTC
ACTCAGTGAGGGTATGAGGTTCGACTGGAGACGTTAATTATACGTGTTAC
ATAGTTGTTTTAAACGCTATACATATCTTCGAATTGTACAAGTGAAATTG
TCATAATTGGTTTAttgtcaacttgaaaaatattaacaaacttTTCTCTC
TCCGTTTGagtctctttttctttgttttgtttttctcttctaatattttt
tctttcctagTATTTAAATGAAATcgacatcaaaacattcgaaaaataaT
CGAATGGTTATTAAAAAGATCAATACATTCTTAtcattttgtaaacattt
ttacccattttcctaaaagatGTTTCCGAgttcgcaaagccttaaaatgt
tcttaacttgttcttaactttttggccatCGTATCgtagccttatgttct
tatatagtttgttcttataaaaaaacgtgtagtgatTACACGGGTGATAA
AATAGTCAAAAATGAGCTATGACTTTCGACCCGACTTTCTATTTGAAATC
AGCAGAGTTCAAAGTCTCAGAGAAGTATATTATAAATGTTTTTGTCTGAG
TAGTAAGATgttcattttcatctttcattttcaatttttaaatatttaat
aaagGTTATATTGATCTGCTTAAGATTTTCTTTACAATGAGGAGGTATTA
CCGTACTAGTCATATATTTTTTTACCTCAAAGCAAATctcatttttttgg
aatagactttagatagttttctaaaaatagtaaaaaccaAGGATAAGCTT
CATTACCCTGTAATTACCTTGAAAAATGTCTACATGTTTTtcttattaga
acacctaaaatttgactGAGCCTGGAtaagattatttttttggcagtttt
cagtctaaaatgttcttaaatgcgttcttaatttttcagactattctgaa
tcgacaatatcatgcaaaaataaagagcacttaaaattggtaaaatttag
ACAATATTGACTCACGATTTTGGAAAATCCATctctaagttcggttaaaa
ctgcttgaaaagaggaaaaattgtagtttcttgtcattttttccaaactg
aggctgggcatgttcttatgacgttcttaatttttcgtcgaatttcagcc
tgaatggttcttataaactgggttctaataaaagataAAATGTGTATGAG
ACTTCACTTTTAATTAGTATAGCCAGTTGAGCAGGAAAATAGTTATTAAA
ACAAAAGACCAGAACAAGGAAAAAGCTATCATAGAAGACATTTATTTTCC
TCGAATTTTCTTGATAATCAGAATAACCATGGTAGTTAAATTAAGACAAT
CAATTATCATCATCTCTTCATTATTTTGTCacattgttttcttttctttt
tgtattgCATACAATGACCCTGATGACCCTGATGCTATGTGTGTGATTCT
TCGATAATTGCTTTCTTAAACGTGATAGAGATGATATACACGCTTCAGTG
TCATTTTTTAcggttattttttatttgatttttatatacgtttatacagg
gtgtcccgaataAAGGTATCAattcgtaccacttctatagaaagaaattt
cttgtgtgtgtttcataaaatttgaaatgtttatCTCTGTGTCATAgtaa
ttgtcatgagacatcttttatgaataacttttacaaaaaaacaattctca
ataactttaacgccAAGAAATTGTATAGGAAGTTCTTTTTAATCAcaatg
actgttgtaaaaacaattattgtgttggtatacattttcttacatttttt
taaacacacgcaacaaccttttactcagaatcatgttcgaactcgatact
ttttttcaggacaccCTGTATTTGTTATCCAGAGTCTTTGGCTGAAGAAA
ACTTGCAAGAATATTTGTAGCCTGgggatccatgctatgatttcttattt
catatactgatggcgaaagatatagcatggtttgggctgggagtttgaat
ttcccagatcctaatgacggttgaaaacataaccaatcaaattttgttat
tattttactGGTCACACATTCTCAGAGAAAGTGCTAGTGCcgaaaatttg
gtttttattttagtaagtgaagacagcgctaaattcgaatttcccagtGT
AAAtcttttgaggcagaaatctgcctcacagcTCATACCCGTCCTGCATA
TGTCAGATTATCAAAATACaagacgggtctcctgtctagaaTATATGTAG
CTTTCAAATTTAGCTTTTCCGTTACTTTTCAGACAACGCTACATTAATCA
ACATAGGTTGGGACTAACTGTCTAAGAAATTTCACAGCCAACCAGATCTT
AAAGAAAataacagcaacaacaacattGGAAGAAACACTAGCAGTATTAA
CATCAGCGACATCAACAACTTGTAGCAAGTCCAGCAATAGTATCATCAAA
ACAGCCAGCAAAACTAACATCCAACCACATATGCAACATTTTTGCTAAAC
ATTGATACTAAAACTATCAGTTGGACCTCAGACGACATCACCAACAACTT
ACCCCAATGGAATAAATAAATTTCCATGGCCGGTGAATCTGAAGAAAAAC
TAAATCAAAAAGACGAAGAACAAAAAATCGAATTGACAACAATGACCATT
AAAAACGAAGTTATTGACGATGTTTCCCCGACTGGTAGGTGATTACACTT
TTCTCCgttaaaagaacatccaaagatttTTTGAGCCTTAGGTTGCCCTT
AGCTTTTTATtttaaagcttaaaaatgttcttaacgtgtaattcaatttt
tttcaccattttagaAGTGATTTTGtgcgatttcttaagaaattgggtgt
tttcgagtTTGCAAAGGTTCAAAATGCTCTTACTGTACTTGCTGTTAGTA
TATTGGCCATCgatgccttatgttcttatataatttgttcttaagcAGCA
TGTGTACTCTTTTCTGAGAATTCTTGAATTTCGTGAAATTTTATATGCAC
GTTCTTCAATTCAATTCAGTTCAattcaaaaatgatttgtttACCTGCat
aaattttggtaaaattaagaacagtttaagaaaattttcaggCAAAAGTA
AAGAACGACGGAAGGtataaaaaatgttaaatgttCTTGTAACAAACTTG
TATTAATCCCTGTTAAGACCCATTTTTGCACCCCTACCCCTTGAAAAATC
TGCAAGAAACTTGCCCCGTTTAGAGTAATAGGCTGATGCAGTTACATTCT
CTCATTAAATACAGCACTAGATAATAATATCTTATCTTTATATATCTAGG
ATATCCAAGACCAGAGTCTGCGTCTCCTTCTGGTTACCCAAGACATTCAT
CAACATCGTATCGGAGATATCCATCAGAGAATCAAACTGCTGAAAGTCGT
TCATCACTAGAAGACTGGGATGATGAGCCTGAATCACCTTCCAGATTCCC
TGCTTCTAAGGTGACACTTATAAACGAGGAGCCTGAACAGCGTGGTCAGC
ATTATTATGAGAGCTATCAGACAAGACAAAGTCCTGACCCACGAAGACGC
ATCGATCAAGAACTAAACTTAGATGCGGACAGCCAATCACCGAAATCTCC
TGGCTTTTATAGTAATGAAACTAGAAGAAGTAACCCCGATTTATCAAAAT
ATGATCGCCAATCTTCATCGCAAAGAAGTAGTGGCTCGCCTCACGAAAGT
ATTGAGCATTCAACCATAAAAAGACAATTTTCAAGACCAGATGAGTCTTT
AAAACGGAACACAATTGTTGAGCCACCACCGGTAAGAGAACATCGCTTTG
AAGGTGCTTATAAAACAACTGGTGGTGATGCAGCTGAAAAAGTCTGGCTA
TATGAAGAGAATATCAAAAAGGTAAGCTTTTGTTAATttatcatcaacat
gaaaaacatgaacaatatgattggctaaaaacgcgtacataaatgctgta
tttcatattgtaccgtgCAAATACAAGAACGCATTCAAAAAGGGTTCTGG
TAAGCGAGATAtcatattttgtacaattttacCCTTCTAGGTTTCTTTTT
CGCTTCCAATACACAACAACTTTCTANCTAAATCAAAAAGACGAAGAACA
AAAAATCGAATTGACAACAATGACCATTAAAAACGAAGTTATTGACGATG
TTTCCCCGACTGGTAGGTGATTACACTTTTCTCCgttaaaagaacatcca
aagatttTTTGAGCCTTAGGTTGCCCTTAGCTTTTTATtttaaagcttaa
aaatgttcttaacgtgtaattcaatttttttcaccattttagaAGTGATT
TTGtgcgatttcttaagaaattgggtgttttcgagtTTGCAAAGGTTCAA
AATGCTCTTACTGTACTTGCTGTTAGTATATTGGCCATCgatgccttatg
ttcttatataatttgttcttaagcAGCATGTGTACTCTTTTCTGAGAATT
CTTGAATTTCGTGAAATTTTATATGCACGTTCTTCAATTCAATTCAGTTC
AattcaaaaatgatttgtttACCTGCataaattttggtaaaattaagaac
agtttaagaaaattttcaggCAAAAGTAAAGAACGACGGAAGGtataaaa
aatgttaaatgttCTTGTAACAAACTTGTATTAATCCCTGTTAAGACCCA
TTTTTGCACCCCTACCCCTTGAAAAATCTGCAAGAAACTTGCCCCGTTTA
GAGTAATAGGCTGATGCAGTTACATTCTCTCATTAAATACAGCACTAGAT
AATAATATCTTATCTTTATATATCTAGGATATCCAAGACCCGAGTCTGCG
TCTCCTTCTGGTTACCCAAGACATTCATCAACATCGTATCGGAGATATCC
ATCAGAGAATCAAACTGCTGAAAGTCGTTCATCACTAGAAGATTGGGATG
AGGAGCCCGAATCACCTTCCAGATTCCCTGCTTCTAAGGTGACACTTATA
AATGAGGAGCCTGAACAGCGTGGTCAGCATTATTATGAGAGCTATCAGAC
AAGGCAAAGTCCTGACCCACGAAGACGCATTGATCAAGAATTAAACTTAG
ATATGGACAGCCAATCACCGAAATCTCCTGGCTTTTATAGTAATGAAACT
AGAAGAAGTAACCCCGATTTATCAAAATATGATCGCCAATCTTCATCACA
AAGAAGTAGTGGCTCACCTCACGAAAGTATTGAGCATTCAACCATAAAAA
GACAATTTTCAAGACCAGATGAGTCTTTAAAACGGAACACAATTGTTGAG
CCACCACCGGTAAGAGAACATCGCTTTGAAGGTGCTTATAAAACAACTGG
TGGTGATGCAGCTGAAAAAGTCTGGCTATATGAAGAGAATATCAAAAAGG
TAAGCTTTTGTTAATttatcatcaacatgaaaaatatgaacaatctgatt
ggctaaaaacgcgttCATTAATGTTGTATTTAATATTGTACCGTGCAAAT
ACAAGAACGCGTTcaaaaaggggtctggtaagcgagatatcatattttgt
acaattttatgATTATAGAAGGGTTTCTTTTTCGCTTCCAATACACAACG
ACTTACTTAAAGTGTTTATGAAACtaatgttttgatctttttaatgacca
tTCGATTCTTTtctcgaatgttttgatgttgatttcaccAAAAAattgga
agagaaaaacaaaacaaaaacagaggcacaaatggagagagaaagtttct
taatatttttcaagttgatgcACACTTTTATTAATCGTACAATattggat
atatttttcgagttcagattttcatcatattttccgAGGCCGGtgaggaa
aatatagaaaactctgaacAAGATTGTACTCGGCATATTGTACTCGGTAC
CGTGTTATAactactaggtcacagtgtggatgtaaaccacactgaaacga
ccacCTTCCATCATGCATCGCATCGCATGaagctcgcgaaagagcgcgca
cacagtattaacgcctacatgtcatctccagcacatgttagattattcat
tgaaaacagattacaatatagtcatttttcatgtctcgattattcaattc
cgaataaaagacattcagggaaaaaaaagagaaacacctggctaatctag
ttaaaaaaaccgaaagtgaatggtagacaaagtaatgagccaaggcaaaa
cgagattagcgtaccactattaAAGAAACTGCCTCCAGCAGTCGATTACT
TAATTACGGCCCTGGTTTATATCGGCATGGTTAAAAGATTTACAATTGAC
TCCCTCTAATTCGATCTATAAGGGACCAAGATACGAATTACAGAGGTGAA
TTTGAACCACTTTTCAGCTAAGGAGATCGATATTGTAGTTTGAATTATAT
AACAATTCGGTTAATAGAGGATCGAATTAGAAAAGATTTGACTGTATAAG
ATATTTTACcaccaaaaataaaattacgATCATAAAACATTACCCCGTTT
ATTGCAGAGACAGgaaaaatttcaatcatttcCCTCCGAGAGAACTGCAA
TGGCTTGTAACTAACAACAAAACTTTTCCAATCGTTTGCCGGTTATccca
ggaaaaatagcggaaaatCTCAGAAAAGTGACAATAAGAATGTTAGTGCG
GAAAAaaggaaacttataaaaaacgacggTACTTTGGAGTAATAAGTAAT
AGCAGATAATTAAATTGCAAGTGGTGATTATAATAGAAAAAGATAATATC
AGATTTTAGCCGCATCCTGGTAACAAAAAACCTTTGTTACACTAAAACTG
TAACCAGGAGTAAACGGTTGCTAAGTGACACAGGATGCAAACATAATTTA
TATGGATTATCATCATAACATTTCATAATTtgtggaaaaaaatcattttg
tgTGTCTCCCTTTCTCTATTCTGGGAGAGACTTCAAAGAAAGCCGAGAAT
GTAAGCATGCGATTATTAAGGAATTAAAAGTTTCTCAATATGTAGGTGGT
TATATGGTTCGATTACTCTACCCAAGCAATTATCTGAATTAATTAGTGCA
ATTTAGCTCCCCTCCTCCTCGACCGACAAAAAGATTCAACACTTAAGCAA
TCCTGATCAGGAAAATTATggggaaaatcgggaaaattttggggaaaatt
gtgaaaattttgagaaaattggggaaacaaaaacatatccggggaaattt
gattaaaattatcattggagcatttttaggctttaggATCCCGAGATCCT
AAGGTTAAAACTCTAAAGTGTTACATTAAAAGTCAGACTTTAAAGGATTT
GTTTTTAGACaaaattcatcaattttaatttacaagctttgtCACATTAG
ATTGACatgaatgtggagcaagattggccagaaagGGGAAAATAAACTTa
cttgtttatatcagcataatataacaatatgcagacactgtcctgatatg
aaatatgtgtctgatataaaaaCGGGAACAattatctaaaaacaaaacct
atAAACTCTAAATTTCAATAAGAAGTAGGTGATGATTATTGAATTGTCGT
AAAATCCTGTCTGTAGTAAATTTTATTACCTATAAAGATTCTCCAAGTAG
CCAGTTCCCAAGCCTTTTTCTTGATACTTGACCGCACCCCAACCCAACCT
AGACCCAACCCTACTAGGTACGATCTGGATATTATTCCCTCTTGCCGTAT
CGAAAAGCACATATTgatgatgtcagcaaaaattaCGCACTGGGCATGTC
TCCTCTAACGAAAACTTTGTAAAGTTagtttccgccattatggaagcaaa
cgttcgatttgtgCGAGCGATCTCGTCTACAGATTCgaatgtttgcttcc
ataatggcggaaattacatgaaaacatgaaaaacctctataaGCATTACT
TTGTTTTCTTTACAGCTTTACAATCTGGATAAGAACCCGCAACGTCAAAT
ATTTCTGGACGAATTTTTCAGCTATAGAAGAACTCATGGTAACTATCTAT
CTATTCATTCTTAAACTATAcgtatttttttatgagaacatccaaaaatt
tttgaagtcttttgatgcgcttttaactttttgagtttcaagcttaaaaa
tgttcttagcatgttcttattttcatcataatGTAAGTATTTGTTTTTTC
CTTCGCAGGCCTTTATTGCAAGATTCCCGTTATCGCCCGAAAACCTTTAG
ACGTGTTTTTACTGTATAGCATCGTTCAAAAGTACGGTGGCTTTGAACAG
GTAAGTAACTCcctccccagctggcacacaacgttgttgtgaacgttaga
taaacgttaaatggacgttgtgaacgttagataaacgttgaaacaacgtt
gtgtgccagctccctcaactttcaaattttcactttttattacAAGGGCC
GCTCTTTAATTCTGGgaataaattttctttgaataagacatccctgtctc
agtgccccggtggaaccttttccctcagtggggatgaaaatttttatcga
aatcctattggggatagaaaatatattgtttccagctcaaaagtggggat
ggttttggagtctggcaatttcccagtggggtattttttccaccggggac
gattttttgggctatttttcCATCGAAgcggggggtccaccgggtctgtg
acgcATGAGTGTAATAAGGCATTGATTGCAGGAAAGGTTTAATTAAGCGC
AATTTCACAGTCGATAGGTAATGAGAATGATTAACGGCTTTTCGTTGGTT
AGATGCATAAAACGTCCAGAATATTTGAAATCAACAGAAAAAGTTATATA
GCGAAATAAAATGAGTTAAAGTCTCGAAAGGCTATTcataaatctttaaa
ttttccCAAGCAAGAAAAAACCTTAAGTGGCTTCATCAATAGTTCCACAT
CTAGCTTCCCTCGCtagcacataacgttgtttcaacgtttatttaatgtt
cacaacgtccatataacgctaGGTGAACTTTGGAAAAACggtgtgtgtca
gctgggtctTCAGGGCTTTAAACAAACATGCAGAATTTATTTATCTATAA
TATAAATCAATGTGAAACtgaatttcgaattttttttcttacagACGATG
AAAAATAGAATGTGGAGCCAAATAGCCAGAGAATTGGAATTGCCGAGAAC
GATGACCAGTGGGGCGTTCACGCTGAAATTAAAGTATGTTTGCCAGTTTT
TATACTAAGCTTGGATAATGGCAGTATTCAAGTATTTAATTTGAATATTT
CCATCATTTGAATATTCATGACGAAATTGTCCTGAAACTTATGAGTGTGC
TATGATTACCACCACCAtagaatttggcaactgaacccAAACTCGCCTTG
CTTTTTGAACTGTAAATTACCAAATTATCTCCCAGCAAAGCTCCAGAATT
CcacaaaaattataattgtttATTTAAAGTATGCATTGCATGTTTTGGTT
TACTGGAGTTCCCAACCTAGGAATGACTTAAGAATATCTCTAGCTGactt
tttcaccaaaaaaattaataatatcTATATCCATGAAATGGAAAAAGCGA
AAGCTCGTATTAAACTAAAACtgatattttaaaaaattgctAGGTATATT
CGCCTCCTGTATCAATTCGAATGTTACAAAGTCAAGAAACAAGTTAACAA
ATCAATACTATTCAATGAAGCATCCATCTTACCAGAACAGATGTCACAGA
TGAATGATCACGTCCCCCAGCACCTATCAATCCACCAGCAACAGAATCCA
GCTTATAGACAACATCAACAAACATCGAAATCATCTTCCAATGACCACCG
AAGGGGAAATGATGATTATTATAGGGAACGACGTGATGAACACTCCAGAG
AAAATATGATGAGAGTAAAACAAAGAGATGACCAATTCAATGAAAGACCA
ACTTTTTCCAAAACCGATCGGGTGAGTTTATTGTCTTTAATCGATTCCAA
GAAACAGTTGAGTGTCTtaaactcgaacctctataactcggaTGTCTCCT
TGGTATAAGTTCTATGGTTCCTTCTGTTTAACATTGCTTTGCATTGCATT
GCTCTGCCTAAATCAACTCTGAACTCGGACCTCCATATCTCGaaagtctc
cttaactcgaacaacttTTGTGGTCAATGCTTTATATACTTTGCTccgta
actcgaaatttctttacctcgaacaaatttgcgttccTGTGTGTGTTCAA
GTTATGTAGACTCAACTGTAATAGAAaattagtattttatgttttgatat
atCTTTCTTTcatatgtttccaatttttcatgCCACTGGTTCTGCCctat
caaaaacttttagatataattttctttgaaaagtcGATTATCTAAGTCGC
TCTactttttacgtcacttcttcTTTTTGTAAATAGACGTCAATAAAAAt
actaattcatgatatgcaccactgcaatgtcttctgacattacgtcacgg
agccaatagctcattggttggaagtgacgtaaaatcagtcacaatacgtc
actttcaaccaatcggctattgggtggaacggaagacattgcaatggtgc
atatcatgattAGGTGGATTTCGAAATCGGGCCTCCCAAGTgggagtcaa
ggatgataaccactatGCCAATAGACGTAGGCCCGGAGAAAGCAGGGAGA
CTAGGGAGACTTCAGCCTTCCagcttttgagcaaatgagatatttttctc
aaattcctagaaaatcttatctcattttgagctttcagcctccccacttt
aatGGTTGTTCCGCCGTGCCTGAATCCCGCCTGAATAGGCCTTTCTCTAA
CTATACATCGATAAATATTATGGTAGATATTCTACTTACTCTATCATTTC
AATCTTATCTTATTTACAGAATCGCTATTCACCACACAGAGATACTGGGG
GCTCATCACCATCCTCAAACAACGATATCGTTTTACGATCATCTACTCCA
CCTTCTTCCGATCGCAATCATCGGGATCACCATCGGCGTCTTCCACCTTC
GATTCATAGTCGTAAAAGAGGAGTCCATGAAGAATTGGACGATGATACCG
ATACAGGAACATCGGGATCACAACCTAAATCGCCTAGACTGGATACACAA
TCTGTGTCTAGATTTTCTGTTGATGTTGTTGAATCTTCGAGAGATAGTAT
TGTGTTAAAGGTCAGAATGAACAATGATGTTTTTGAAGGTGTTCTTGAAT
GCACGCAGCGGGGAGATATCAGAGATTATGCTGCTGAACAAAAAATGTAA
CCAAGAGAGAAAGAATATACTGCACAGAGACTACGAAGAAAAGTGTCATC
Tgagtaattcatgatattcatgacgtaatattttctacggaaagacccca
gtTTGTGTAAGTAGTGGCAAGTTTTGAACAACTTTTCTCTAGCTAAAACT
caccactactggcaaaaaccggggtatttccgtagaaaacattaagtcat
aaatatcatgaatttgtaAATTGTACACCATGTAATAAAACTCAGACACG
GTAAGAGTGATACAAGGATATTGTAAATCAAGAAGTAAACAAGGATTCTA
AAATACCATTGAGTCATCGCCAAAGTATCATTAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010894XLOC_010894Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019382-exon-sc0000326-1491911889:251074..251114TCONS_00019382-exon-sc0000326-1491911889:251074..251114Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:251074..251114TCONS_00019382-exon-sc0000326-1510915933:251074..251114Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:251074..251114TCONS_00019382-exon-sc0000326-1575043694:251074..251114Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:260006..260407TCONS_00019382-exon-sc0000326-1491911889:260006..260407Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:260006..260407TCONS_00019382-exon-sc0000326-1510915933:260006..260407Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:260006..260407TCONS_00019382-exon-sc0000326-1575043694:260006..260407Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:261023..261594TCONS_00019382-exon-sc0000326-1491911889:261023..261594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:261023..261594TCONS_00019382-exon-sc0000326-1510915933:261023..261594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:261023..261594TCONS_00019382-exon-sc0000326-1575043694:261023..261594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:265589..265661TCONS_00019382-exon-sc0000326-1491911889:265589..265661Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:265589..265661TCONS_00019382-exon-sc0000326-1510915933:265589..265661Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:265589..265661TCONS_00019382-exon-sc0000326-1575043694:265589..265661Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:265832..265923TCONS_00019382-exon-sc0000326-1491911889:265832..265923Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:265832..265923TCONS_00019382-exon-sc0000326-1510915933:265832..265923Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:265832..265923TCONS_00019382-exon-sc0000326-1575043694:265832..265923Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:266768..266856TCONS_00019382-exon-sc0000326-1491911889:266768..266856Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:266768..266856TCONS_00019382-exon-sc0000326-1510915933:266768..266856Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:266768..266856TCONS_00019382-exon-sc0000326-1575043694:266768..266856Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:267267..267594TCONS_00019382-exon-sc0000326-1491911889:267267..267594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:267267..267594TCONS_00019382-exon-sc0000326-1510915933:267267..267594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:267267..267594TCONS_00019382-exon-sc0000326-1575043694:267267..267594Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1491911889:268543..269260TCONS_00019382-exon-sc0000326-1491911889:268543..269260Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1510915933:268543..269260TCONS_00019382-exon-sc0000326-1510915933:268543..269260Clytia hemisphaericaexon
TCONS_00019382-exon-sc0000326-1575043694:268543..269260TCONS_00019382-exon-sc0000326-1575043694:268543..269260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:251074..269260 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21047	1.70783	0.397685	0.285141	15.4071	11.2158	30.8911	31.3029	12.6554	17.4825	9.36617	13.1526	10.9361	6.386	5.09996	13.3941	0.940704	2.87691	2.70919	22.2432	0.937945	0.00482782	0.442967	2.07322e-05	0.198471	0.959478	0	0	0	0.0190851
Blast
[Close]
BLAST of TCONS_00019382 vs. Swiss-Prot (Human)
Match: ARI3A (AT-rich interactive domain-containing protein 3A OS=Homo sapiens GN=ARID3A PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.103e-25
Identity = 45/107 (42.06%), Postives = 74/107 (69.16%), Query Frame = 2 
Query:  989 WLYEENIKKLYNLDKNPQRQIFLDEFFSYRRTHGLYC-KIPVIARKPLDVFLLYSIVQKYGGFEQTMKNRMWSQIARELELPRTMTSGAFTLKLKYIRLLYQFECYK 1306
            W YEE  K+LY LD +P+R+ FLD+ FS+ +  G    +IP++A++ LD+F+LY +V + GG  + +  ++W +I + L LP ++TS AFTL+ +Y++ LY +EC K
Sbjct:  223 WTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEK 329
The following BLAST results are available for this feature:
BLAST of TCONS_00019382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI3A2.103e-2542.06AT-rich interactive domain-containing protein 3A O... [more]
back to top