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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019373 ID=TCONS_00019373|Name=TCONS_00019373|organism=Clytia hemisphaerica|type=transcript|length=626bp
CAAAGCTTTGATTGAATCAACCATCGAATACTTCAATAATCTCTCTTGTG
TACAATGGATACCAAAGAAGTCTGAGCACGAGCAATATGTGACCTTTCAA
CCTTCAACAACGTGTAGTTCTCTGATTGGACGCAATCAAAATGGTAACCA
TCAATCAATTTTCATTGGTCAAGAATGTTCATATCGTCCAATAATATTGC
ACGAAATGTATCACGTGATGGGGTTTCAACATGAAATGAAAAGATTTGAT
CGAAATGATAATATTGAAGTactttgggaaaatattttaccaGgctttga
aagatatttcaagaAACTTCTTCCAGAGAAAACTTTATTCCCTGATTACC
CATACGACATTTCAAGCATATTGCATTATGGATCTTTTGCTTACTCAAAA
TATTCATCTTTACCCACAACCCTTCAATCAAATGGCATGAGAATTAGACC
AATCAAAGAGAGATCTCTTACACAAATGGATATTCAGAAACTGAATGATT
TGTACAAATGTAAAGATACACAAAAAGAGGGCTGGAGttcttggtcaaat
tacagtaGATGCAATGCTGATTGTTTCAAAAcaagattcaaatttttcac
cgGTACAAATTATGGCACCGATCCTA Run BLAST on NCBI protein sequence of TCONS_00019373-protein >TCONS_00019373-protein ID=TCONS_00019373-protein|Name=TCONS_00019373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
KALIESTIEYFNNLSCVQWIPKKSEHEQYVTFQPSTTCSSLIGRNQNGNH
QSIFIGQECSYRPIILHEMYHVMGFQHEMKRFDRNDNIEVLWENILPGFE
RYFKKLLPEKTLFPDYPYDISSILHYGSFAYSKYSSLPTTLQSNGMRIRP
IKERSLTQMDIQKLNDLYKCKDTQKEGWSSWSNYSRCNADCFKTRFKFFT
GTNYGTDP Run BLAST on NCBI transcript from alignment at sc0000326:142016..145161+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019373 ID=TCONS_00019373|Name=TCONS_00019373|organism=Clytia hemisphaerica|type=transcript|length=3146bp|location=Sequence derived from alignment at sc0000326:142016..145161+ (Clytia hemisphaerica)
CAAAGCTTTGATTGAATCAACCATCGAATACTTCAATAATCTCTCTTGTG
TACAATGGATACCAAAGAAGTCTGAGCACGAGCAATATGTGACCTTTCAA
CCTTCAACAACGTGAGTTTGACAATTCTAATTtcacttactcttaggttc
caaactATAGGGGAGtgggtttggaaaattttcaacattttgataAACTG
GTGACACCTAATTGCTGAGGTGGGGTTggaaatataggctaaaatcagag
TATTTAGGTTCATTCTTAGGTGGTTTCAGCAAAGTAAAATATCCGATCAA
AATACACTGTAGGGGTACTTTCGATAaaatcatagaggtataaataaaga
caggagatgaatttgtcggtaattggtcgttaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttta
gtagaactcaagtctgttctgaacattcttactatcagcatcgaagattt
ctagccttctaatatacgagaataaaataaaatttagctccaggaaataa
gtttgcgttcaattttggcatccattaaattttgttttgaaaagatattt
tctctagccagaaaatgaaaagttctttataagcacacacaatttcagac
ccaatttgtagacaaaaagtcgctggagaattttggaggaaagtattaag
cagtagggttcaccttgaagaaaatgttgatcgaaaaatcttgttatttg
atgaaggattgcaaagtttacaggcccttttttagtccaaatattttctt
acaccaatgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatgagattatgagcatgcat
acctcgtaatttttttaatcgtagggcgagcatggttacaatagcatact
tctcctgtttctttatacctccatgataaAATGCAATGCAATGTACTTTT
GAAATTGAGTGCCCACAGAAGCATGTTCACAAGACTTTCTACCTTCACTT
ATATTTCTAGACGTTTAATTCAATTTAAATCATCTTTAGGTGTAGTTCTC
TGATTGGACGCAATCAAAATGGTAACCATCAATCAATTTTCATTGGTCAA
GAATGTTCATATCGTCCAATAATATTGCACGAAATGTATCACGTGATGGG
GTTTCAACATGAAATGAAAAGATTTGATCGAAATGATAATATTGAAGTac
tttgggaaaatattttaccaGGTATGTTTTAAAACTGTCTTCGGTTTTGC
TTTTAAATTAGAGTGATATCGtgtgcttactcatcaattttaatacaTAA
GCTTTTCCCCATTGATTTGACACGattgtggagcaagattgatcagaaaa
gaaaaagaaatttttgactCGGTCATACCTTGTtaaacccccttctcaca
gacccacttggGACCCCTTCACGCTGGAGAAATTGGCCTGTTGGAAAATT
ATCAAACAAAACAATCCTCACTGCGAAAAACTATGTTATTtatcccatcc
ccactggattttctgacttaaaaacaaaaagaattgagGCCACAGCTact
aaaaatatgggaatatcagtCCCCTTCGAGTTTCactccgttatttttac
cccccactggcttaaaaagttctaccgggtcTCTGAGAAGGGTGAGTCTT
ATTGGTCTAGTTTCGTATGAGTTTCGACATATAAGTCACAAAGAAGctat
taatttaaaaaatatccttttcttctttacaggctttgaaagatatttca
agaAACTTCTTCCAGAGAAAACTTTATTCCCTGATTACCCATACGACATT
TCAAGCATATTGCATTATGGATCTTTTGCTTACTCAAAATATTCATCTTT
ACCCACAACCCTTCAATCAAATGGCATGAGAATTAGACCAATCAAAGAGA
GATCTCTTACACAAATGGATATTCAGAAACTGAATGATTTGTACAAATGT
AAAGGTATGGTTTATCATGTCCCAGGCCTGGTGGAagtggggagactggg
gagactttaGCCTCCTCACTTTtgagaaaatgagatttttttctcaaatt
cccaacttttacggttgttccgccgttTTTTTGTcctaaaaaaaccttta
aagatACTAATAAGAACCGCTAAAGCTTTCAGTGGTAATTATTTAAAGGT
AAATTTTATCTCCAAACGAATTCTGATAAAAAGCACTACTGGCATTATTA
TAAGGTATAACCAGactattttaaaagtaattAAGCTCATGACTGCAGGA
AATCGGTGGAAATAAATAAATGGGTACTAATGAGAAAGGGGAAtccaaaa
atttttctaaaattgataAACATGAGCTTTGGAGCCTTAGGCTACTTATA
ACGGAGTTTTAACCATGTTTTAGATTCGCTGAGGCtacaaaatagaattt
tttgtCTCCCTTCAAATGTAGAAGCAAACCTAACTTATTCTCTCAAAACT
TACATTTTAGCTACAAATTACAAGCTACTACAATCAATTCTCTCTCAAAT
TCGAACTTCCATAATTCCAATGTTTGTGTAATTCGAACTGAAGCTTTAGT
CCCCTCAGCAGGAAATTAAATTAGAATATCCGCTTTAATTCAAATATTTC
TCCAACTTGAAGAAATGTTatagtcccttgaagatcgaattagagacaAC
AAATATAACTTAATCGTCATGTGGCAATATTTTAGATACACAAAAAGAGG
GCTGGAGttcttggtcaaattacagtaGATGCAATGCTGATTGTTTCAAA
AcaagattcaaatttttcaccgGTACAAATTATGGCACCGATCCTA Coding sequence (CDS) from alignment at sc0000326:142016..145161+ >TCONS_00019373 ID=TCONS_00019373|Name=TCONS_00019373|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at sc0000326:142016..145161+ (Clytia hemisphaerica)
AAAGCTTTGATTGAATCAACCATCGAATACTTCAATAATCTCTCTTGTGT
ACAATGGATACCAAAGAAGTCTGAGCACGAGCAATATGTGACCTTTCAAC
CTTCAACAACGTGTAGTTCTCTGATTGGACGCAATCAAAATGGTAACCAT
CAATCAATTTTCATTGGTCAAGAATGTTCATATCGTCCAATAATATTGCA
CGAAATGTATCACGTGATGGGGTTTCAACATGAAATGAAAAGATTTGATC
GAAATGATAATATTGAAGTactttgggaaaatattttaccaGgctttgaa
agatatttcaagaAACTTCTTCCAGAGAAAACTTTATTCCCTGATTACCC
ATACGACATTTCAAGCATATTGCATTATGGATCTTTTGCTTACTCAAAAT
ATTCATCTTTACCCACAACCCTTCAATCAAATGGCATGAGAATTAGACCA
ATCAAAGAGAGATCTCTTACACAAATGGATATTCAGAAACTGAATGATTT
GTACAAATGTAAAGATACACAAAAAGAGGGCTGGAGttcttggtcaaatt
acagtaGATGCAATGCTGATTGTTTCAAAAcaagattcaaatttttcacc
gGTACAAATTATGGCACCGATCCTAAAGCTTTGATTGAATCAACCATCGA
ATACTTCAATAATCTCTCTTGTGTACAATGGATACCAAAGAAGTCTGAGC
ACGAGCAATATGTGACCTTTCAACCTTCAACAACGTGTAGTTCTCTGATT
GGACGCAATCAAAATGGTAACCATCAATCAATTTTCATTGGTCAAGAATG
TTCATATCGTCCAATAATATTGCACGAAATGTATCACGTGATGGGGTTTC
AACATGAAATGAAAAGATTTGATCGAAATGATAATATTGAAGTactttgg
gaaaatattttaccaGgctttgaaagatatttcaagaAACTTCTTCCAGA
GAAAACTTTATTCCCTGATTACCCATACGACATTTCAAGCATATTGCATT
ATGGATCTTTTGCTTACTCAAAATATTCATCTTTACCCACAACCCTTCAA
TCAAATGGCATGAGAATTAGACCAATCAAAGAGAGATCTCTTACACAAAT
GGATATTCAGAAACTGAATGATTTGTACAAATGTAAAGATACACAAAAAG
AGGGCTGGAGttcttggtcaaattacagtaGATGCAATGCTGATTGTTTC
AAAAcaagattcaaatttttcaccgGTACAAATTATGGCACCGATCCTAA
AGCTTTGATTGAATCAACCATCGAATACTTCAATAATCTCTCTTGTGTAC
AATGGATACCAAAGAAGTCTGAGCACGAGCAATATGTGACCTTTCAACCT
TCAACAACGTGTAGTTCTCTGATTGGACGCAATCAAAATGGTAACCATCA
ATCAATTTTCATTGGTCAAGAATGTTCATATCGTCCAATAATATTGCACG
AAATGTATCACGTGATGGGGTTTCAACATGAAATGAAAAGATTTGATCGA
AATGATAATATTGAAGTactttgggaaaatattttaccaGgctttgaaag
atatttcaagaAACTTCTTCCAGAGAAAACTTTATTCCCTGATTACCCAT
ACGACATTTCAAGCATATTGCATTATGGATCTTTTGCTTACTCAAAATAT
TCATCTTTACCCACAACCCTTCAATCAAATGGCATGAGAATTAGACCAAT
CAAAGAGAGATCTCTTACACAAATGGATATTCAGAAACTGAATGATTTGT
ACAAATGTAAAGATACACAAAAAGAGGGCTGGAGttcttggtcaaattac
agtaGATGCAATGCTGATTGTTTCAAAAcaagattcaaatttttcaccgG
TACAAATTATGGCACCGATCCTAAAGCTTTGATTGAATCAACCATCGAAT
ACTTCAATAATCTCTCTTGTGTACAATGGATACCAAAGAAGTCTGAGCAC
GAGCAATATGTGACCTTTCAACCTTCAACAACGTGTAGTTCTCTGATTGG
ACGCAATCAAAATGGTAACCATCAATCAATTTTCATTGGTCAAGAATGTT
CATATCGTCCAATAATATTGCACGAAATGTATCACGTGATGGGGTTTCAA
CATGAAATGAAAAGATTTGATCGAAATGATAATATTGAAGTactttggga
aaatattttaccaGgctttgaaagatatttcaagaAACTTCTTCCAGAGA
AAACTTTATTCCCTGATTACCCATACGACATTTCAAGCATATTGCATTAT
GGATCTTTTGCTTACTCAAAATATTCATCTTTACCCACAACCCTTCAATC
AAATGGCATGAGAATTAGACCAATCAAAGAGAGATCTCTTACACAAATGG
ATATTCAGAAACTGAATGATTTGTACAAATGTAAAGATACACAAAAAGAG
GGCTGGAGttcttggtcaaattacagtaGATGCAATGCTGATTGTTTCAA
AAcaagattcaaatttttcaccgGTACAAATTATGGCACCGATCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019373-exon-sc0000326-1491911889:142016..142126 | TCONS_00019373-exon-sc0000326-1491911889:142016..142126 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1510915933:142016..142126 | TCONS_00019373-exon-sc0000326-1510915933:142016..142126 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1575043694:142016..142126 | TCONS_00019373-exon-sc0000326-1575043694:142016..142126 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1491911889:143405..143586 | TCONS_00019373-exon-sc0000326-1491911889:143405..143586 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1510915933:143405..143586 | TCONS_00019373-exon-sc0000326-1510915933:143405..143586 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1575043694:143405..143586 | TCONS_00019373-exon-sc0000326-1575043694:143405..143586 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1491911889:144098..144319 | TCONS_00019373-exon-sc0000326-1491911889:144098..144319 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1510915933:144098..144319 | TCONS_00019373-exon-sc0000326-1510915933:144098..144319 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1575043694:144098..144319 | TCONS_00019373-exon-sc0000326-1575043694:144098..144319 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1491911889:145051..145161 | TCONS_00019373-exon-sc0000326-1491911889:145051..145161 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1510915933:145051..145161 | TCONS_00019373-exon-sc0000326-1510915933:145051..145161 | Clytia hemisphaerica | exon |
| TCONS_00019373-exon-sc0000326-1575043694:145051..145161 | TCONS_00019373-exon-sc0000326-1575043694:145051..145161 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000326 | supercontig | sc0000326:142016..145161 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004222 | metalloendopeptidase activity |
| GO:0008237 | metallopeptidase activity |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004222 |
metalloendopeptidase activity |
| molecular_function |
GO:0008237 |
metallopeptidase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00019373 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 2.848e-25 Identity = 62/176 (35.23%), Postives = 93/176 (52.84%), Query Frame = 2
Query: 2 KALIESTIEYFNNLSCVQWIPKKSEHEQYVTFQPSTTCSSLIGRNQNGNHQSIFIGQECSYRPIILHEMYHVMGFQHEMKRFDRNDNIEVLWENILPGFERYFKKLLPEKTLFPDY--PYDISSILHYGSFAYSKYSSLPTTLQSNGMRIRPIKER-SLTQMDIQKLNDLYKCKDT 520
K I E F SCV + P + E Y+ FQ C S +G G Q+I IGQ C+Y+ II HE+ H +GF HE R DR+D + + W+ IL G++ F + +L D PYD S++HY F+++K +S+PT I +R + +D+++LN +Y C T
Sbjct: 92 KGAILYAFEMFRLKSCVDFKPYEGE-SSYIIFQQFDGCWSEVGDQHVG--QNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTY--DDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNCTTT 262
The following BLAST results are available for this feature:
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