TCONS_00019366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019366
Unique NameTCONS_00019366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019366 ID=TCONS_00019366|Name=TCONS_00019366|organism=Clytia hemisphaerica|type=transcript|length=401bp
cgaccattaaagatatttccgcccgtctacggaaaaaaaatttgcggcgC
GGACACGCCAGTAGAAAGAGGGCAAGAGGGCCAACTACTCATCCCGTATT
TTTCATCCTGCAATCCAAAGTTCATAGAGTTGTCCCGCATTTAAGTTAAC
TTACTTGTCACACCAAGATGGCGGCTGCGAGTTGCGGAAAATAGCTCACA
ATTAAATACATGTCATCATCCAACATTACATGAAAAATAAGCAGACATAA
AATGGCAAAACAACcgcaaattttaaaaattgaaccaGACAATGAGCTAG
TATTTCGAGGTAAGCAGACAGTTTTGAATCAACTGGAATGCATAGTtaag
ttttgattttaatatattttgtaTCTTTCTGTTCGATTACTTTCAATCAT
A
Run BLAST on NCBI

transcript from alignment at sc0000326:1954..2514+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019366 ID=TCONS_00019366|Name=TCONS_00019366|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0000326:1954..2514+ (Clytia hemisphaerica)
cgaccattaaagatatttccgcccgtctacggaaaaaaaatttgcggcgC
GGACACGCCAGTAGAAAGAGGGCAAGAGGGCCAACTACTCATCCCGTATT
TTTCATCCTGCAATCCAAAGTTCATAGAGTTGTCCCGCATTTAAGTTAAC
TTACTTGTCACACCAAGATGGCGGCTGCGAGTTGCGGAAAATAGCTCGTA
TAAGATTTTTGGAAGTGATCATANGGCTGCGAGTTGCGGAAAATAGCTCT
TAAGATTTTTGGAAGTGATCATAAAGCTGACTTTGACATTGCTTTTCGAG
AAAGTTATTGTTAAAACTTTCGAAATCAAGTTATCGTAGTGTTTCTTTTT
GGTTTAGACAATTAAATACATGTCATCATCCAACATTACATGAAAAATAA
GCAGACATAAAATGGCAAAACAACcgcaaattttaaaaattgaaccaGAC
AATGAGCTAGTATTTCGAGGTAAGCAGACAGTTTTGAATCAACTGGAATG
CATAGTtaagttttgattttaatatattttgtaTCTTTCTGTTCGATTAC
TTTCAATCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010886XLOC_010886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019366-exon-sc0000326-1491911889:1954..2150TCONS_00019366-exon-sc0000326-1491911889:1954..2150Clytia hemisphaericaexon
TCONS_00019366-exon-sc0000326-1510915933:1954..2150TCONS_00019366-exon-sc0000326-1510915933:1954..2150Clytia hemisphaericaexon
TCONS_00019366-exon-sc0000326-1575043694:1954..2150TCONS_00019366-exon-sc0000326-1575043694:1954..2150Clytia hemisphaericaexon
TCONS_00019366-exon-sc0000326-1491911889:2311..2514TCONS_00019366-exon-sc0000326-1491911889:2311..2514Clytia hemisphaericaexon
TCONS_00019366-exon-sc0000326-1510915933:2311..2514TCONS_00019366-exon-sc0000326-1510915933:2311..2514Clytia hemisphaericaexon
TCONS_00019366-exon-sc0000326-1575043694:2311..2514TCONS_00019366-exon-sc0000326-1575043694:2311..2514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000326supercontigsc0000326:1954..2514 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.2467	31.5332	48.7476	49.5341	42.3616	25.9921	56.5354	66.9385	26.6265	39.1531	34.0716	28.0531	30.3514	34.5861	23.9227	29.4941	30.3783	27.4402	14.7319	22.5918	26.4359	31.894	20.7628	28.3106	31.544	43.2022	28.6308	19.1986	29.123	18.1791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top