TCONS_00019347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019347
Unique NameTCONS_00019347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019347 ID=TCONS_00019347|Name=TCONS_00019347|organism=Clytia hemisphaerica|type=transcript|length=616bp
GTCTTTTCGTACGGTGTCAAAAGTGTGGTAACTTAATCGATCATACTCGT
ACCAAATACAATCGACGCGACGGCTCACAACTATCGGTTTCGCTGTTTTG
CTTTAATGGATGCGAACTCACATGGCGTAGCCAGCAAAAATCTAAATACC
TCAGGGGTATTGGCAACCTTGACATTACAACAGGATTATTTTTTTCAGGT
TGTAGAAGAGCTAAAGCAAAAGGAACCGGTCACACTTATTGGTGATGGGA
GATGTGACAGCCCTGGCCATTCCGCTAAGTATTGTACATTTACTCTTATG
GAACCCGAATCAAAAAAGATTGTTGCATCTACTGTCGTATCAGTTACACA
GGTGAGTATAGCCAGTAAATCCCTTATGCACCTCCTATCCAATAGAATTT
GTCTTGGCGAGCCCGTACactatttttaaaataaaatattttatgaccTA
TAATTGCTAgatgtgattttgaaattttgattcatCAACACGTTTTTGCT
TGTAAGCTAACATTTGCTTGTGATCATGATACAAGAAGTATCGAAACGTC
aagaatgaacaaaattttgttttttgtctttacttttttttttcagaaga
aaatttGTTCAAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00019347-protein

>TCONS_00019347-protein ID=TCONS_00019347-protein|Name=TCONS_00019347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MDANSHGVASKNLNTSGVLATLTLQQDYFFQVVEELKQKEPVTLIGDGRC
DSPGHSAKYCTFTLMEPESKKIVASTVVSVTQVSIASKSLMHLLSNRICL
GEPVHYF
Run BLAST on NCBI

transcript from alignment at sc0000325:311143..312243-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019347 ID=TCONS_00019347|Name=TCONS_00019347|organism=Clytia hemisphaerica|type=transcript|length=1101bp|location=Sequence derived from alignment at sc0000325:311143..312243- (Clytia hemisphaerica)
GTCTTTTCGTACGGTGTCAAAAGTGTGGTAACTTAATCGATCATACTCGT
ACCAAATACAATCGACGCGACGGCTCACAACTATCGGTTTCGCTGTTTTG
CTTTAATGGATGCGAACTCACATGGCGTAGCCAGCAAAAATCTAAATACC
TCAGGGGTATTGGCAACCTTGACATTACAACAGGATTATTTTTTTCAGGT
AAGGTTTTTACTCTTTGAGGTGGTGTATCTGTCTGTTGTTATCTGTTGCA
GTGCGAACTTATGCCGTCTTCAGGGCTATAAAAGAGTGACAAAACTTGAC
ATAAAGATACTATTTGCCTTTTGCAGGTATTCCGTTTGCNTATGCCGTCT
TCAGGGCTATAAAAGAGTGACAAAACTTGACATAAAGATACTATTTGCCT
TTTGAAGGTATTCCGTTTGCAAAATTTCAACGTTTCGCGGAAGTACTCGG
GCTCAAGATTATGGACGACAATACTTTCTATTGTTTACGCAGACATTATG
TTACACCAGTTATTCGCCAAAATTGGGAGGATGAAAGGAAGCAGGTAAAT
TGCTAAAAGAAACTTACGCTGTCATTCTGTTTCCCTTGGTATATTAACCT
AATAAAACAATAACAAAACGTGTAATGTTGGGGTGAATTTTCTAGACATT
TGTGTTAACAATACCTTTTATTAATCCCCTTAGGTTGTAGAAGAGCTAAA
GCAAAAGGAACCGGTCACACTTATTGGTGATGGGAGATGTGACAGCCCTG
GCCATTCCGCTAAGTATTGTACATTTACTCTTATGGAACCCGAATCAAAA
AAGATTGTTGCATCTACTGTCGTATCAGTTACACAGGTGAGTATAGCCAG
TAAATCCCTTATGCACCTCCTATCCAATAGAATTTGTCTTGGCGAGCCCG
TACACTATTTTTAAAATAAAATATTTTATGACCTATAATTGCTAGATGTG
ATTTTGAAATTTTGATTCATCAACACGTTTTTGCTTGTAAGCTAACATTT
GCTTGTGATCATGATACAAGAAGTATCGAAACGTCAAGAATGAACAAAAT
TTTGTTTTTTGTCTTTACTTTTTTTTTTCAGAAGAAAATTTGTTCAAGTA
T

Coding sequence (CDS) from alignment at sc0000325:311143..312243-

>TCONS_00019347 ID=TCONS_00019347|Name=TCONS_00019347|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000325:311143..312243- (Clytia hemisphaerica)
GTTGTAGAAGAGCTAAAGCAAAAGGAACCGGTCACACTTATTGGTGATGG
GAGATGTGACAGCCCTGGCCATTCCGCTAAGTATTGTACATTTACTCTTA
TGGAACCCGAATCAAAAAAGATTGTTGCATCTACTGTCGTATCAGTTACA
CAGGTGAGTATAGCCAGTAAATCCCTTATGCACCTCCTATCCAATAGAAT
TTGTCTTGGCGAGCCCGTACACTATTTTTAAATGGATGCGAACTCACATG
GCGTAGCCAGCAAAAATCTAAATACCTCAGGGGTATTGGCAACCTTGACA
TTACAACAGGATTATTTTTTTCAGGTTGTAGAAGAGCTAAAGCAAAAGGA
ACCGGTCACACTTATTGGTGATGGGAGATGTGACAGCCCTGGCCATTCCG
CTAAGTATTGTACATTTACTCTTATGGAACCCGAATCAAAAAAGATTGTT
GCATCTACTGTCGTATCAGTTACACAGGTGAGTATAGCCAGTAAATCCCT
TATGCACCTCCTATCCAATAGAATTTGTCTTGGCGAGCCCGTACACTATT
TTTAAATGGATGCGAACTCACATGGCGTAGCCAGCAAAAATCTAAATACC
TCAGGGGTATTGGCAACCTTGACATTACAACAGGATTATTTTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010867XLOC_010867Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019347-proteinTCONS_00019347-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019347-exon-sc0000325-1575043694:312046..312243TCONS_00019347-exon-sc0000325-1575043694:312046..312243Clytia hemisphaericaexon
TCONS_00019347-exon-sc0000325-1575043694:311143..311560TCONS_00019347-exon-sc0000325-1575043694:311143..311560Clytia hemisphaericaexon
TCONS_00019347-exon-sc0000325-1510915933:312046..312243TCONS_00019347-exon-sc0000325-1510915933:312046..312243Clytia hemisphaericaexon
TCONS_00019347-exon-sc0000325-1510915933:311143..311560TCONS_00019347-exon-sc0000325-1510915933:311143..311560Clytia hemisphaericaexon
TCONS_00019347-exon-sc0000325-1491911889:312046..312243TCONS_00019347-exon-sc0000325-1491911889:312046..312243Clytia hemisphaericaexon
TCONS_00019347-exon-sc0000325-1491911889:311143..311560TCONS_00019347-exon-sc0000325-1491911889:311143..311560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000325supercontigsc0000325:311143..312243 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.435845	0.25501	0.197394	0.386239	0.117552	0	0.367016	0.209836	0.0734556	0.0909866	0	0.058054	0.189857	0.301029	1.58392	0.31871	0.261749	0.268285	0.463312	0.0969646	0.455127	0.246653	0	0.272597	0.0935894	0.0835263	0.478103	0.255122	0.193501	0.197147
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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