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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019341 ID=TCONS_00019341|Name=TCONS_00019341|organism=Clytia hemisphaerica|type=transcript|length=270bp
CATAAATGCTTCAAAATACTGGCAAAAGattccaGAGAACAATCATGGCA
TACAGCCAACCACTATAGTGAATGAAGccgAAGATCTACAGCCAAACAAT
TTAGTTCTTTTCATTCCAATTCTATCGAATGAATGGATCGTACAATTACA
TTTCAAACTTCTTGCCGAGCATGCTGGTGAAAGCAAATGGTGTAATATAA
TACATGTCACAAAGGGTCAAAACAATATTGTTTACGGAGATCGAACACCA
GCCATTTTCTTTGATAAGGt Run BLAST on NCBI transcript from alignment at sc0000325:209658..213064- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019341 ID=TCONS_00019341|Name=TCONS_00019341|organism=Clytia hemisphaerica|type=transcript|length=3407bp|location=Sequence derived from alignment at sc0000325:209658..213064- (Clytia hemisphaerica)
CATAAATGCTTCAAAATACTGGCAAAAGGTAGGGAAAGTTTTTTAGAGTT
TGAATAAAGACTCTATCTAGCCCAGAAGGCTTCCTGATGGGATGACGGCG
ATTAAGTAGCTCGATAGTATATGCATAGTCATTATAATTACATACTTTCT
TTATAATGACTATATATGGGACATCTCAGTTTTTAGCTTTTGCGCCTGCG
GACTGAAGAACAGATTGTAGTTGAAGATAAATTTGTTTGAAAATAGGGTA
TCTTATCGGCCCTTTTTACGCTGGCCCTAATTTAACGCCGGCCCCTTTTA
CGCCGGCCCTTATTCCGCCACAGCCTACATTTCGGGCTCACGCCAATTAG
GGCCGTAAATAACGCCAAAACTTGTAAAAATCGCAAAACAGTAAGTATTA
ACTAAAATTTACATTAAAGTGTCATCTTTCAGTATTAAACTGTTGAAAAT
TCCATTGAAAATCATTGATTTTCGTGAAGTTTTGGGTGTAGAGCATAGAA
TAAGAAAGCCGCGGACGGAATGATAACATCTGGATTTCTGTTGTTCTATC
TCTGTCGTATTTGATGACTATTTGTTGATCAAGAAATAAGTAATGTAGCA
TCTTTAATGGTAAATTTTATTGGTTTGTCGTTAATACTTACTTCTCAGTG
CATTTTAGACATCAATTATATGCCCTTGATAATACACTTGCATTATAAAA
TCATTGTACAGGAAAGATCAGCAATGAGAAATTTAAACAAGCACGAAATG
GCTGGGCTGAAAGAACTCAAAAATTAATAAAGTGCATCGAAATGCCTTCA
CAATATTTCAGTGAAATCTTTTCAGAAATTAATGAAAAAAGTATATCAAG
ATAATTCTGTGAAAATTTCAAGCCAGCGCCTTCAAAATTTATCATTTAAA
CCGACATGAAAGTTGTCATCTTGAATATAATTCTTATAATTTTAATTTTG
GCGAAAAACTATCGTTTCCACAAAATACCCCTAAAATATGTCCAAAATTA
GTTCGAGTGTTCTATTGGGTAAAGATTCAAAGATATCTAGCAATAAAAAA
CCTTTTGTGAAGGTAAATAAGAAAAACTCAGAAACTATCTACCAATAATA
AACTGACAATCTTGATGTTGTTACAAAGCTCGGAGACAGAGATAGAACCG
CAATTAACTGAGAAGACAATGTGGTATACATATTCCAGCCGTGGCTTTCT
TATACTATGTGTAGGGTAAAAAAATGGATAGTTTTTATCCTTTAATCATG
CCTAAAATCCTTCAAATTGAGAAAAAATGGTCAAAAATTAGCTTCAAGTA
GATTATGTTTCAGTGTTTTTCTTCAAAAAACGGTGACCTCTGTCAAATGC
TCCTAGTCTGCTTCGCTGGATTTATCAAAAAGCAAAATTCGGTCAAAGAA
GTAGACTGTAATCTAAGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAGGGGGGGGGGGTACTTAGGGAAAAATTGATGCTGGGTATGTGT
GGACGATAAGGGTCAGTTTTTTCACCTTCCAAACTCTCTCTAAGATTACA
AAAATCAGGAAGTTTTAAAGCAATCCCTCTAAGGTAGGTAAAACTCACGA
TCCTTAGGAATTTTTTTTGACATTTGAAAAAAATTCTCTCTAAGGGTAAT
ACATTTTTTCAAAGATCGAAGTGCCTTTCTAAAGGTCTTTCTAAGGGGCA
TTTTCTCGCTAGAATTTTTTTTTCTCTCTAAGGTTCGGTTTTCGAAGGTT
CCGTCCTCGCATACCCCTCATCTGCCAGCCCTAGTATCCCCCTTGGAGTT
TATTTTTCTAATAAACTTTTGCATATTCACTCAAATCACTATGTTATAAA
TCTAATTTTGTACTGCTAAGATTAAAAATGATATGAAACTTGAGATATTA
ACCTTTTAAGTGCCAACGTCGGGTATATTGGACAGGGGCTATATAGTAAT
ATCTAGTGTGAGTTAAAAATCATCATTTTTGATCTTACTCGTAGGAATTG
GATTGGGCTTCATGATCAAGAAAATAAAAATCAAAAGTGAGTCTTTACAG
CGAGAATTTAAGCCAAAAAGTAACAAAAATTCAAAAATTTGACCAAGATC
CACTTTTCTGAGATTTTGACGAGTGATCCAAGAACCTTCAAATTTGGCAC
TGCTTTACTTGATTCTGTCCTCTAGCGAATAAATTTGAAGTTTTACTACT
GGGCACCTTTCCGTCATTCAGTCAGGTCCGCGCAGGGAAGTGAAGAAGTT
TAATCGATTCTATTTTTTTTCAGATTCCAGAGAACAATCATGGCATACAG
CCAACCACTATAGTGAATGAAGGTAATTATTCTTTATATCAATACGTCCT
TTTTCTAACGAAGACCCTCGAAAAACCCGGAATTTACCTACTGTCTGTTA
CGTAGTGAAACATAGTGGTTAAAATCCCGCTTTTTCGGGTGCTTCCGCTA
GAAAACATGAAATTAACTAAGTGATTTTTGTAAAATCAAGGCTCAATTAT
AAAGGAAAGTGTCAATAATGTCAAAAAAATGTACAAGCACGAATTCATAC
GCAAAATTATGTTTGAAGGAAAAACGAAAGAAATCTTCAACATATTTCGA
AAATATCTCGTTTTTGAGAAGAAAAGTTTGAAGCTTGAAACTTCAAAAAA
CATTGTATTTTCAACTTTTTAAAAATTTTGGCAACCCTGTCTGATACAAT
TTCTCACAATTTAACGAGTCAGTTATAAAAAAAAGGTGGAAATATTCAAA
TTGTTCAAAAAATGTTGTGTGCATAACTAGTGACATGTCCCTTCAAATTC
AATTTTCCTGAATAACTCTCCCCCAGAGGACACTGTTGTAATATTTTTAA
CATTTTTTTTTCAGCCGAAGATCTACAGCCAAACAATTTAGTTCTTTTCA
TTCCAATTCTATCGAATGAATGGATCGTACAATTACATTTCAAACTTCTT
GCCGAGCATGCTGGTGAAAGCAAATGGTGTAATATAATACATGTCACAAA
GGGTCAAAACAATATTGTTTACGGAGATCGAACACCAGCCATTTTCTTTG
ATAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019341-exon-sc0000325-1575043694:213037..213064 | TCONS_00019341-exon-sc0000325-1575043694:213037..213064 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1575043694:210393..210441 | TCONS_00019341-exon-sc0000325-1575043694:210393..210441 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1575043694:209658..209850 | TCONS_00019341-exon-sc0000325-1575043694:209658..209850 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1510915933:213037..213064 | TCONS_00019341-exon-sc0000325-1510915933:213037..213064 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1510915933:210393..210441 | TCONS_00019341-exon-sc0000325-1510915933:210393..210441 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1510915933:209658..209850 | TCONS_00019341-exon-sc0000325-1510915933:209658..209850 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1491911889:213037..213064 | TCONS_00019341-exon-sc0000325-1491911889:213037..213064 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1491911889:210393..210441 | TCONS_00019341-exon-sc0000325-1491911889:210393..210441 | Clytia hemisphaerica | exon |
| TCONS_00019341-exon-sc0000325-1491911889:209658..209850 | TCONS_00019341-exon-sc0000325-1491911889:209658..209850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:209658..213064 - |
Blast
The following BLAST results are available for this feature:
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