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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019323 ID=TCONS_00019323|Name=TCONS_00019323|organism=Clytia hemisphaerica|type=transcript|length=270bp
GAAAAGTTGAAAGTGTACAAAGATTTAGAGTTGATGGTGGACACGGGTTT
CTTACAAAATGAAACATTGAAAGGTGGAAAGTTCGGACCATACGCATTCA
GTCAAGCACGTATGATCTGGTCAAATATGAAGATCGAATGTAATGATGAC
CTTCCACCTGAAATCAAGATGcaaatgaatttgaaaaagaaacgaAGTGC
TTGAGATTGTTGATGAAAGAATAAACTTGAGATCGACCGATTTCTTTGTT
TGGGACGAACAATTTAAAGA Run BLAST on NCBI transcript from alignment at sc0000325:289117..291978+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019323 ID=TCONS_00019323|Name=TCONS_00019323|organism=Clytia hemisphaerica|type=transcript|length=2862bp|location=Sequence derived from alignment at sc0000325:289117..291978+ (Clytia hemisphaerica)
GAAAAGTAAGTAAATAAGTTTGCGACCTCAATCGAGGGTGCCCCGAGGGC
GCCGACCAGGCCCACTCCTATCGCTGGATTTCTTCACTTActcttgatcc
gtctctttaaaTTGACTGGGGACCAAACTCATAACCCTGTTGAAAATCGC
GTGTAAGTGCACTTAACACTCTTTTACTTTCTAGTGAGCACATCCACTAA
GCGCAGTTAAACACACTTTGGCGCACTTATGCGCGCATAAACGCAAAAAC
GCCTTAATTTTACAAGGCGCAATTAGACGCACTGAAACATACGTAAAAAT
CTTGATATTCCGACGCGATCATCAAATAATAGGCCTAAAATTCAAACTTT
GACGTAActtttttcagttagaatagaaacttgaaattttacatgcGTCT
TAAACAACCTATTTCAAAGCTTTCctgaaagtttcatttttatagCTTTA
GTGGTTTTAAAGATATGGAGATTTTCCTAAAGGATGTGAAAATGTGCTTG
TTTATAGATTTGACGTCAGTTTCTTTTCTGAAGATAAATTCACGTTTTAC
AAAGCAGTACTTTTGATGATAAAACTAAAGACAAAAAATGTAATGAGTAA
ATCCGCGATTTGAGTTCACGAATAATGCATCTTAATTGAGGAACCATTAC
ATTCACCAACAGTGCGAACACGACCAACAAATTGCTTcatagattttctg
atttcagGTAGGTTTCTCGCGCATTCCTTCCAAACAGACTTGATCTTAGA
AATGATTTCCTCCTCTGTTTCAAAAGGCTTCTTCAATCTTCCTCAGTACA
CCTTGCGTTTAACTTCGTTCCAAAAGTAGTAATATAAAGGATTACTGTCG
GGACTCTTCGGAGGCCACTGATCTTTCTTAAAGTATCGTCTCGGTATGGT
TTCCTGCAAAAAGTCTTGGACAATGTTGCTGGTGTGCGATGAAGCTCAAA
TCCATATCTTTGAAACTACTAAAGCTATAAGAATGAAACTTTCAGGAAAG
CTTCGAAATAGGTTGCTAAAGACgcatgtaaaatttcaagtttctattct
aactgaaaaaaagttacgtcaaagtttcaattttaggccTATTTTTTTTG
GCACACCCGGTACACCTCGTGTAAACACTTTTCACTTCTTTTTGAAGAGA
GAGGGGGATTTTTCTATTGCGTATAAGTGTGCCTCTCACTCCTTTTCCCC
TCTGTTCCATCAAATCACTTTGTAGTGCCAGTTAGTGTGCCCGGCAGATA
AATGTACTTAAACGCGATTAGGTGCATTGCTTCACACCTGTTCAAGATCT
CATTTTTTTTACATCTAACTATGCACCAAAATCTATTTAGGTTGAAAGTG
TACAAAGATTTAGAGTTGATGGTGGACACGGGTTTCTTACAAAATGAAAC
ATTGAAAGGTGGAAAGTTCGGACCATACGCATTCAGTCAAGCACGTATGA
TCTGGTCAAATATGAAGATCGAATGTAATGGTAAGTAATTTATTTTGTTA
CTGTACATTAAGGAGCAATGGTAGAGTTGGCCAAGTCGTCAGCAcaattg
atttcaaagccccgaaggggctagatctGAAACACCCGGATGGGAAATGG
AGCCAATAATTTCCCATCCAGATACGCGACccgtttttcgaaaaaattgc
gTAATTCGGACAACaaagctacaatcatggtcgtagtatttgagaaaaaa
ggaaaattcctacgaaatcttataaccacaaacgaatcagaagcgctcta
aattaggttggaagaagggtagagttttaactctgagttttaggatctaa
aagttcaagaatagtTCGATAGGGCTCAGAATGTAGCCttgaagtctata
aacccctcccgaattaaAATAcccgaataaatttatcaattagctcAAAA
GCgacattctcgcccgaactccaaatttcgaaaaacgaggaaataagcta
tgttctcaatagattttgaccatgattgtactttCAAAACGCCATGGTAG
TTACAGTCAACtttttctaattcgaacttctgttATTCAAACTTAAACAT
TGCTCCTCTGGCCTGAAAAGTCGTCTCCTTAATCAGAATCCTTATCTTTG
ATTCGAAGaaaccttgaaaatcgaatataAGAGAGAGCCAACTGTATTTA
CCTCTTTGAATCTTCCCAATCTGGTAAATTCGAAACCAGCCTTATTGAGA
ATGAGTATATACTAACCTTAATAAGACAATCTTTCTACTGCTGGTTTTCt
gttaatacaccttttcgaccgtagccgctaattgccgcgcgggcaatttt
taccaccctaaaaccgtcctagtctttttttcgcgcctGAAGACAATagg
aaaaagtgtaaaaaaaggattggaccgagtttagggtggtaaaaaatgcc
tgcgcggcaattggcggctacggtcgaaaaggtgtatagccTATTTCATA
GAATTCGTGTTTTTAAACGTGATATTTTTCTACGTCATTTCAGTAATCAA
GTTTTTATTGTTGAACACTCTTTTGCGAATTGAGATAACAAAGGCAATAA
CAAAgagttcttgaattcccaagcGAATTGAATGATAACAAAATTCAATT
GTTTTCAACGTCTTTCTCAAAGGGAAATCTGCATAGACTTGCGCATTTTC
CCCCTTTAAATTGATAGAAAATAGCATGTAACAAATACGCGAATCTTATG
AAATAGGCTTATGTTTACCAACTTCTTTATCCCATAGATGACCTTCCACC
TGAAATCAAGATGcaaatgaatttgaaaaagaaacgaAGTGCTTGAGATT
GTTGATGAAAGAATAAACTTGAGATCGACCGATTTCTTTGTTTGGGACGA
ACAATTTAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019323-exon-sc0000325-1491911889:289117..289121 | TCONS_00019323-exon-sc0000325-1491911889:289117..289121 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1510915933:289117..289121 | TCONS_00019323-exon-sc0000325-1510915933:289117..289121 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1575043694:289117..289121 | TCONS_00019323-exon-sc0000325-1575043694:289117..289121 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1491911889:290457..290596 | TCONS_00019323-exon-sc0000325-1491911889:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1510915933:290457..290596 | TCONS_00019323-exon-sc0000325-1510915933:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1575043694:290457..290596 | TCONS_00019323-exon-sc0000325-1575043694:290457..290596 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1491911889:291854..291978 | TCONS_00019323-exon-sc0000325-1491911889:291854..291978 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1510915933:291854..291978 | TCONS_00019323-exon-sc0000325-1510915933:291854..291978 | Clytia hemisphaerica | exon |
| TCONS_00019323-exon-sc0000325-1575043694:291854..291978 | TCONS_00019323-exon-sc0000325-1575043694:291854..291978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000325 | supercontig | sc0000325:289117..291978 + |
Blast
The following BLAST results are available for this feature:
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