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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019314 ID=TCONS_00019314|Name=TCONS_00019314|organism=Clytia hemisphaerica|type=transcript|length=2154bpRun BLAST on NCBI protein sequence of TCONS_00019314-protein >TCONS_00019314-protein ID=TCONS_00019314-protein|Name=TCONS_00019314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp MATSFKRLLVKDFPRPEIQKDSIEQTYWNDFEFPTVVKEFSAINYVDISPRun BLAST on NCBI transcript from alignment at sc0000325:40575..54496+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019314 ID=TCONS_00019314|Name=TCONS_00019314|organism=Clytia hemisphaerica|type=transcript|length=13922bp|location=Sequence derived from alignment at sc0000325:40575..54496+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000325:40575..54496+ >TCONS_00019314 ID=TCONS_00019314|Name=TCONS_00019314|organism=Clytia hemisphaerica|type=CDS|length=20880bp|location=Sequence derived from alignment at sc0000325:40575..54496+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019314 vs. Swiss-Prot (Human)
Match: UTP15 (U3 small nucleolar RNA-associated protein 15 homolog OS=Homo sapiens GN=UTP15 PE=1 SV=3) HSP 1 Score: 346.665 bits (888), Expect = 6.842e-110 Identity = 187/516 (36.24%), Postives = 296/516 (57.36%), Query Frame = 2
Query: 62 TSFKRLLVKDFP--RPEIQKDSIEQTYWNDFEFPTVVKEFSAINYVDISPVEPYDALVTSSAKIQIFNGLTNEIKRTSTRSKDNVFGARYRDDGKLMVAGGESGHIQVLDTISRAILRNFRGHTAATRVCTFSSERTRVFSASDDKTVRQWDIPTEKETHTFKGATDYIRCGCNYPKNPEMFLTGSYDHTVKLWDFRSSENHQVLSLDHGAPVESLIVHSVGAICISAGNNYIKVWDLV-AGRLLNQFSNHQKTVTTLSFNGDERRLLSGSLDRNVKVYNVHDYSVVATLNYPSPILTMALSRDDSYLVLGMSDGAISLQKRKKVAHVDPVAHLRADNSEYKVKKIHKPVTEDDTGFXXXXXXXXXXXNDVIVEYQTFYKKRLMIVDHHLRRFEYQEAL-----KMCMKREDEVVLSLLTELDRRHGLEIALKNQDLPFLIDFINFLSRNISNHIHTATLIPVANLFTDLYMPMLSSEPKFLKHMIKFNRKMKEELKSYEERMKLLGTVEQIFTLM 1585
+K + ++ +P +I +D++ YWN+++ P +KEF A++ VD SP PY+ VT+S++I I+ + E +T +R KD + A +R DG+L+VAG E G +Q+ D RA LR F GHT A F++++ V S +DD TV+ WDIP KE TFK +DY+RCGC NP++F+TGSYDHTVK++D R+SE+ VLS++HG PVES+++ G + +SAG Y+KVWD++ G+LL NH KTVT L + +RLLSGSLDR VKVY+ Y VV + +Y + IL++AL+ +D +V+GM++G +S++ RK A + + R +K +++D+++ KK L + D L+ F +AL C + E+ +S++ EL+RR L AL +D + +NFL RN+S LI A + D+Y+P++ P K + +++E+ E ++ LG ++ +F M
Sbjct: 2 AGYKPVAIQTYPILGEKITQDTL---YWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGRLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFITGSYDHTVKMFDARTSES--VLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALAHEDETIVVGMTNGILSVKHRKSEAKKESLPRRRRPAYRTFIK----------------GKNYMKQRDDILINRPA--KKHLELYDRDLKHFRISKALDRVLDPTCTIKTPEITVSIIKELNRRGVLANALAGRDEKEISHVLNFLIRNLSQPRFAPVLINAAEIIIDIYLPVIGQSPVVDKKFLLLQGLVEKEIDYQRELLETLGMMDMLFATM 494 The following BLAST results are available for this feature:
BLAST of TCONS_00019314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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