TCONS_00019314-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019314-protein
Unique NameTCONS_00019314-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length579

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019314-protein ID=TCONS_00019314-protein|Name=TCONS_00019314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=579bp
MATSFKRLLVKDFPRPEIQKDSIEQTYWNDFEFPTVVKEFSAINYVDISP
VEPYDALVTSSAKIQIFNGLTNEIKRTSTRSKDNVFGARYRDDGKLMVAG
GESGHIQVLDTISRAILRNFRGHTAATRVCTFSSERTRVFSASDDKTVRQ
WDIPTEKETHTFKGATDYIRCGCNYPKNPEMFLTGSYDHTVKLWDFRSSE
NHQVLSLDHGAPVESLIVHSVGAICISAGNNYIKVWDLVAGRLLNQFSNH
QKTVTTLSFNGDERRLLSGSLDRNVKVYNVHDYSVVATLNYPSPILTMAL
SRDDSYLVLGMSDGAISLQKRKKVAHVDPVAHLRADNSEYKVKKIHKPVT
EDDTGFRPRRPKARPKKNDVIVEYQTFYKKRLMIVDHHLRRFEYQEALKM
CMKREDEVVLSLLTELDRRHGLEIALKNQDLPFLIDFINFLSRNISNHIH
TATLIPVANLFTDLYMPMLSSEPKFLKHMIKFNRKMKEELKSYEERMKLL
GTVEQIFTLMTPPPKIQTSETPQYTDEKEVAGGASSDMENSVEIKEGTAS
DEVESIRSADIDFAIDHTNIGKPNKIVID
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010849XLOC_010849Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019314TCONS_00019314Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR018983U3_snoRNA-assocProt_15_C
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
cellular_component GO:0005730 nucleolus
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 476..503
NoneNo IPR availableGENE3D2.80.10.50coord: 147..242
e-value: 4.4E-23
score: 81.1
NoneNo IPR availableGENE3D1.10.10.670coord: 277..498
e-value: 4.0E-8
score: 32.5
coord: 243..276
e-value: 5.1E-11
score: 41.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..541
NoneNo IPR availableCDDcd00200WD40coord: 75..316
e-value: 2.36935E-51
score: 178.297
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 139..153
score: 37.79
coord: 266..280
score: 29.88
coord: 182..196
score: 42.34
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 240..279
e-value: 8.8E-7
score: 38.5
coord: 71..110
e-value: 1.2
score: 16.5
coord: 282..320
e-value: 36.0
score: 7.2
coord: 200..237
e-value: 0.34
score: 19.9
coord: 113..152
e-value: 8.0E-6
score: 35.4
coord: 155..195
e-value: 2.1E-6
score: 37.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 116..152
e-value: 2.7E-4
score: 21.6
coord: 242..279
e-value: 8.0E-4
score: 20.1
coord: 157..195
e-value: 2.2E-4
score: 21.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 178..204
score: 10.141
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 247..288
score: 13.148
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 120..161
score: 12.981
IPR018983U3 small nucleolar RNA-associated protein 15, C-terminalPFAMPF09384UTP15_Ccoord: 364..505
e-value: 6.8E-28
score: 97.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 38..146
e-value: 2.7E-18
score: 65.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 224..238
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 78..288
score: 33.906
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 37..327

Blast
[Close]
BLAST of TCONS_00019314-protein vs. Swiss-Prot (Human)
Match: UTP15 (U3 small nucleolar RNA-associated protein 15 homolog OS=Homo sapiens GN=UTP15 PE=1 SV=3)

HSP 1 Score: 350.132 bits (897), Expect = 1.858e-114
Identity = 193/525 (36.76%), Postives = 299/525 (56.95%), Query Frame = 0 
Query:    3 TSFKRLLVKDFP--RPEIQKDSIEQTYWNDFEFPTVVKEFSAINYVDISPVEPYDALVTSSAKIQIFNGLTNEIKRTSTRSKDNVFGARYRDDGKLMVAGGESGHIQVLDTISRAILRNFRGHTAATRVCTFSSERTRVFSASDDKTVRQWDIPTEKETHTFKGATDYIRCGCNYPKNPEMFLTGSYDHTVKLWDFRSSENHQVLSLDHGAPVESLIVHSVGAICISAGNNYIKVWDLV-AGRLLNQFSNHQKTVTTLSFNGDERRLLSGSLDRNVKVYNVHDYSVVATLNYPSPILTMALSRDDSYLVLGMSDGAISLQKRKKVAHVDPVAHLRADNSEYKVKKIHKPVTEDDTGFRPRRPKAR---------PKKNDVIVEYQTFYKKRLMIVDHHLRRFEYQEAL-----KMCMKREDEVVLSLLTELDRRHGLEIALKNQDLPFLIDFINFLSRNISNHIHTATLIPVANLFTDLYMPMLSSEPKFLKHMIKFNRKMKEELKSYEERMKLLGTVEQIFTLM 510
              +K + ++ +P    +I +D++   YWN+++ P  +KEF A++ VD SP  PY+  VT+S++I I+   + E  +T +R KD  + A +R DG+L+VAG E G +Q+ D   RA LR F GHT A     F++++  V S +DD TV+ WDIP  KE  TFK  +DY+RCGC    NP++F+TGSYDHTVK++D R+SE+  VLS++HG PVES+++   G + +SAG  Y+KVWD++  G+LL    NH KTVT L  +   +RLLSGSLDR VKVY+   Y VV + +Y + IL++AL+ +D  +V+GM++G +S++ RK  A                 KK   P        R RRP  R          +++D+++      KK L + D  L+ F   +AL       C  +  E+ +S++ EL+RR  L  AL  +D   +   +NFL RN+S       LI  A +  D+Y+P++   P   K  +     +++E+    E ++ LG ++ +F  M
Sbjct:    2 AGYKPVAIQTYPILGEKITQDTL---YWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGRLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEILTFKEHSDYVRCGCASKLNPDLFITGSYDHTVKMFDARTSES--VLSVEHGQPVESVLLFPSGGLLVSAGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALAHEDETIVVGMTNGILSVKHRKSEA-----------------KKESLP--------RRRRPAYRTFIKGKNYMKQRDDILINRPA--KKHLELYDRDLKHFRISKALDRVLDPTCTIKTPEITVSIIKELNRRGVLANALAGRDEKEISHVLNFLIRNLSQPRFAPVLINAAEIIIDIYLPVIGQSPVVDKKFLLLQGLVEKEIDYQRELLETLGMMDMLFATM 494
The following BLAST results are available for this feature:
BLAST of TCONS_00019314-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UTP151.858e-11436.76U3 small nucleolar RNA-associated protein 15 homol... [more]
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